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Quantitative Mathematical Model of Neuronal Morphogenesis

Research Project

Project/Area Number 22500279
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Bioinformatics/Life informatics
Research InstitutionAichi Prefectural University (2012)
Nara Institute of Science and Technology (2010-2011)

Principal Investigator

SAKUMURA Yuichi  愛知県立大学, 情報科学部 (50324968)

Co-Investigator(Renkei-kenkyūsha) NAKAMURA Takeshi  東京理科大学, 生命科学研究科 (60362604)
INAGAKI Naoyuki  奈良先端科学技術大学院大学, バイオサイエンス研究科 (20223216)
Project Period (FY) 2010 – 2012
Project Status Completed (Fiscal Year 2012)
Budget Amount *help
¥3,770,000 (Direct Cost: ¥2,900,000、Indirect Cost: ¥870,000)
Fiscal Year 2012: ¥1,040,000 (Direct Cost: ¥800,000、Indirect Cost: ¥240,000)
Fiscal Year 2011: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2010: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Keywordsシステム生物学 / 細胞形態 / 数理生物 / 統計解析 / 生物形態
Research Abstract

(1) Neuronal polarization is achieved by the traction force generated at the neurite tip. We analyzed microscopic images given by our collaborators to estimate the traction force generated by neurons. By this collaborative research, we showed the signal conversion from extracellular molecule to traction force for the first time in the world. The manuscript about the algorithm to estimate cellular traction force is under submission. (2) Using quantitative mathematical model of neuronal polarization, which we developed in the previous work, we study the significance of irregular events observed during neuronal development. We showed that irregular transport from soma to neurite tip is necessary for neuronal polarization. (3) We developed the quantitative mathematical model of cell motility driven by Rho family GTPases (Cdc42/Rac1/RhoA). Mechanical force was estimated from morphological change by incremental Bayes method.

Report

(4 results)
  • 2012 Annual Research Report   Final Research Report ( PDF )
  • 2011 Annual Research Report
  • 2010 Annual Research Report
  • Research Products

    (25 results)

All 2013 2012 2011 2010 Other

All Journal Article (4 results) (of which Peer Reviewed: 3 results) Presentation (12 results) (of which Invited: 2 results) Book (5 results) Remarks (4 results)

  • [Journal Article] Conversion of a Signal into Forces for Axon Outgrowth through Pak1-mediated Shootin1 Phosphorylation2013

    • Author(s)
      Toriyama M, Kozawa S, Sakumura Y, Inagaki N
    • Journal Title

      Curr. Biol.

      Volume: 23 Pages: 529-534

    • NAID

      120005716834

    • Related Report
      2012 Final Research Report
  • [Journal Article] Conversion of a Signal into Forces for Axon Outgrowth through Pak1-mediated Shootin1 Phosphorylation2013

    • Author(s)
      Michinori Toriyama
    • Journal Title

      Current Biology

      Volume: 23 Issue: 6 Pages: 529-534

    • DOI

      10.1016/j.cub.2013.02.017

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Systems Biology of Symmetry-Breaking during Neuronal Polarity Formation2011

    • Author(s)
      Inagaki N, Toriyama M, Sakumura Y
    • Journal Title

      Dev.Neurobiol.

      Volume: 71 Issue: 6 Pages: 584-593

    • DOI

      10.1002/dneu.20837

    • NAID

      120005830836

    • Related Report
      2011 Annual Research Report 2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A Diffusion-based neurite length sensing mechanism involved in neuronal symmetry-breaking2010

    • Author(s)
      Toriyama M, Sakumura Y, Shimada T, Ishii S, Inagaki N
    • Journal Title

      Mol.Syst.Biol.

      Volume: 6 Pages: 894-894

    • NAID

      120005830837

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Presentation] Rho ファミリーG タンパク質による細胞形態形成の定量数理モデル2013

    • Author(s)
      Yuichi Sakumura
    • Organizer
      Neuro2013
    • Place of Presentation
      京都国際会館
    • Year and Date
      2013-06-21
    • Related Report
      2012 Final Research Report
  • [Presentation] 分子輸送の不規則性が神経形態を極性化する2013

    • Author(s)
      作村諭一
    • Organizer
      第65回日本細胞生物基質に埋まるビーズ(黒点) の変移データからの力推定 (白矢印) 。白線領域は成長 円錐のエッジを表す。 学会大会(招待講演)
    • Place of Presentation
      愛知県産業労働センター
    • Year and Date
      2013-06-20
    • Related Report
      2012 Final Research Report
  • [Presentation] 分子輸送の不規則性が神経形態を極性化する2013

    • Author(s)
      作村諭一
    • Organizer
      第65回日本細胞生物学会大会
    • Place of Presentation
      愛知県産業労働センター
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] RhoファミリーGタンパク質による細胞形態形成の定量数理モデル2013

    • Author(s)
      Yuichi Sakumura
    • Organizer
      Neuro2013
    • Place of Presentation
      京都国際会館
    • Related Report
      2012 Annual Research Report
  • [Presentation] 力学過程を介した細胞形態制御の定量数理モデル2012

    • Author(s)
      田中大河, 中村岳史, 池田和司, 作村諭一
    • Organizer
      電子情報通信学会総合大会
    • Place of Presentation
      岡山大学
    • Year and Date
      2012-03-20
    • Related Report
      2011 Annual Research Report
  • [Presentation] An Estimation of Cell Forces with Hierarchical Bayes Approach Considering Cell Morphology2012

    • Author(s)
      Kozawa S, Sakumura Y, Toriyama M, Inagaki N, Ikeda K
    • Organizer
      19th International Conference on Neural Information Processing (ICONIP 2012)
    • Place of Presentation
      Doha
    • Related Report
      2012 Annual Research Report 2012 Final Research Report
  • [Presentation] Quantitative modeling of cell morphogenesis by Rho family small GTPases2012

    • Author(s)
      Sakumura Y
    • Organizer
      US-Japan Brain Research Cooperative Program
    • Place of Presentation
      New Orleans
    • Related Report
      2012 Annual Research Report 2012 Final Research Report
  • [Presentation] Rho GTPases による細胞形態制御の数理モデル2012

    • Author(s)
      作村諭一, 田中大河, 池田和司, 中村岳史
    • Organizer
      日本植物学会第76回大会シンポジウム
    • Place of Presentation
      兵庫県立大学
    • Related Report
      2012 Final Research Report
  • [Presentation] Rho GTPasesによる細胞形態制御の数理モデル2012

    • Author(s)
      作村諭一
    • Organizer
      日本植物学会第76回大会
    • Place of Presentation
      兵庫県立大学
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] Simulation Analysis of the Network of the Stochastic Spike Generation Model Imitating the Hodgkin-Huxley Neuron2011

    • Author(s)
      Sakumura Y.
    • Organizer
      International Conference on Modeling and Simulation Technology (JSST2011)
    • Place of Presentation
      東海大学
    • Year and Date
      2011-10-23
    • Related Report
      2011 Annual Research Report
  • [Presentation] Neural polarization by an economizing system in neurite elongation2011

    • Author(s)
      Sakumura Y, Inagaki N
    • Organizer
      EMBO Conference Series on Systems Dynamics of Intracellular Communication (SPATIAL 2011)
    • Place of Presentation
      スイス・エンゲルベルク
    • Year and Date
      2011-05-16
    • Related Report
      2011 Annual Research Report
  • [Presentation] Multimodal feedback control for neuronal morphological polarization2010

    • Author(s)
      Sakumura Y, Toriyama M, Inagaki N
    • Organizer
      The 33rd Annual Meeting of the Japan Neuroscience Society
    • Place of Presentation
      神戸
    • Year and Date
      2010-09-04
    • Related Report
      2010 Annual Research Report
  • [Book] Quantitative Modeling of Neuronal Polarization2012

    • Author(s)
      Sakumura Y, Inagaki N
    • Publisher
      Quantitative Modeling of Neuronal Polarization, Technological Advancements in Biomedicine for Healthcare Application
    • Related Report
      2012 Final Research Report
  • [Book] Technological Advancements in Biomedicine for Healthcare Application2012

    • Author(s)
      Yuichi Sakumura
    • Total Pages
      8
    • Publisher
      IGI global
    • Related Report
      2012 Annual Research Report
  • [Book] IGI global Developmental Process Phase 12012

    • Author(s)
      Sakumura Y, Inagaki N
    • Publisher
      Quantitative Modeling of Neuronal Polarization(In press)
    • Related Report
      2011 Annual Research Report
  • [Book] 遺伝(神経細胞が突起の長さを検知する仕組みと神経細胞の対称性の破れ)2011

    • Author(s)
      鳥山道則、作村論一、稲垣直之
    • Total Pages
      7
    • Publisher
      エヌ・ティー・エス
    • Related Report
      2010 Annual Research Report
  • [Book] 細胞工学(細胞形態変化の定量と現象論的モデル)2010

    • Author(s)
      塚田祐基, 作村諭一
    • Total Pages
      5
    • Publisher
      秀潤社
    • Related Report
      2010 Annual Research Report
  • [Remarks] 神経細胞の軸索を正しい場所へ伸ばすナビゲーションの仕組みを発見(奈良先端大)

    • URL

      http://www.naist.jp/pressrelease/detail_j/topics/1473/

    • Related Report
      2012 Final Research Report
  • [Remarks] 研究代表者ホームページ

    • URL

      http://www.ist.aichi-pu.ac.jp/lab/sakulab/

    • Related Report
      2012 Final Research Report
  • [Remarks] 神経細胞の軸索を正しい場所へ伸ばすナビゲーションの仕組みを発見(奈良先端大)

    • URL

      http://www.naist.jp/pressrelease/detail_j/topics/1473/

    • Related Report
      2012 Annual Research Report
  • [Remarks]

    • URL

      http://hawaii.naist.jp/~saku/

    • Related Report
      2010 Annual Research Report

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Published: 2010-08-23   Modified: 2019-07-29  

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