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Identification and validation of biomarker proteins based ontheir thiol redox states

Research Project

Project/Area Number 22501035
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Tumor diagnosis
Research InstitutionTokyo Medical University

Principal Investigator

KAWAKAMI Takao  東京医科大学, 医学部, 客員准教授 (40366117)

Co-Investigator(Renkei-kenkyūsha) YANO Hiroyuki  独立行政法人農業・食品産業技術総合研究機構, 食品総合研究所, ユニット長 (20355580)
Project Period (FY) 2010 – 2012
Project Status Completed (Fiscal Year 2012)
Budget Amount *help
¥4,290,000 (Direct Cost: ¥3,300,000、Indirect Cost: ¥990,000)
Fiscal Year 2012: ¥1,040,000 (Direct Cost: ¥800,000、Indirect Cost: ¥240,000)
Fiscal Year 2011: ¥1,040,000 (Direct Cost: ¥800,000、Indirect Cost: ¥240,000)
Fiscal Year 2010: ¥2,210,000 (Direct Cost: ¥1,700,000、Indirect Cost: ¥510,000)
Keywords酸化還元 / プロテオーム / 化学修飾 / 質量分析 / 翻訳後修飾 / 配列データベース / 蛋白質データベース / レドックス制御 / バイオマーカー / 酸化修飾蛋白質 / 癌
Research Abstract

Cellular reduction-oxidation (redox) states are regulated mainly by the cysteine thiol groups in protein molecules. Using a fluorescent chemical probe specific with reductive thiol groups, we established reaction conditions for quantitative thiol modifications. Non-reduction/reduction two-dimensional electrophoresis is a promising choice towards comprehensive redox state analysis. Polyacrylamide gel strip backing with a plastic film enabled higher reproducibility of the first dimensional separation. In addition, we made a program of extracting peptide information containingselected post-translational modification(s) from public sequence databases.

Report

(4 results)
  • 2012 Annual Research Report   Final Research Report ( PDF )
  • 2011 Annual Research Report
  • 2010 Annual Research Report
  • Research Products

    (19 results)

All 2012 2011 2010 Other

All Journal Article (8 results) (of which Peer Reviewed: 6 results) Presentation (9 results) Book (2 results)

  • [Journal Article] Disulfide proteomics: Current status in thioredoxin biochemistry and industrial research2012

    • Author(s)
      Takao Kawakami and Hiroyuki Yano
    • Journal Title

      Japan Agricultural Research Quarterly

      Volume: 46(4) Pages: 277-85

    • NAID

      130002147995

    • URL

      http://www.jircas.affrc.go.jp/

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Sec14l3 is specifically expressed in mouse airway ciliated cells2012

    • Author(s)
      L.Shan, S.Noritake, M.Fujiwara, S.Asano, C.Yoshida-Noro, N.Noro, K.Yamashita, T.Kawakami
    • Journal Title

      Inflammation

      Volume: 35 Issue: 2 Pages: 702-712

    • DOI

      10.1007/s10753-011-9363-z

    • Related Report
      2012 Annual Research Report 2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] A novel method, using ubiquitin-trapping with a UIM peptide and immunoprecipitation, for identification in non-denaturing conditions of molecules associated with ubiquitinated proteins2012

    • Author(s)
      Kuroda S
    • Journal Title

      Kitasato Med J

      Volume: 42 Pages: 120-127

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Identification by differential tissue proteome analysis of talin-1 as a novel molecular marker of progression of hepatocellular carcinoma2011

    • Author(s)
      Hideaki Kanamori, Takao Kawakami, Kathryn Effendi, Ken Yamazaki, Taisuke Mori
    • Journal Title

      Oncology

      Volume: 80(5-6) Issue: 5-6 Pages: 406-15

    • DOI

      10.1159/000330734

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Proteins secreted by lung adenocarcinoma cells: Identification of candidate diagnosis markers from culture supernatants of dissected tumor tissue2010

    • Author(s)
      Ran Guo, Takashi Hirano, Takao Kawakami, Yunbo Gong, Masaharu m/zADHPFLFC367IK Ac-GSIGAASMEFC11FDVFKm/zGLVLIAFSQYLQQC34PFDEHVKm/zVHHANENIFYC30PIAIMSALAMVYLGAKNomura, Gaku Yamaguchi, Hisashi Saji, Masatoshi Kakihana, Tatsuo Ohira, and Norihiko Ikeda
    • Journal Title

      Japanese Journal of Lung Cancer

      Volume: 50 Pages: 141-50

    • NAID

      130000252348

    • URL

      http://www.haigan.gr.jp/

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Proteomic biomarker discovery based on statistical analysis using liquid chromatography-tandem mass spectrometry2010

    • Author(s)
      Takao Kawakami(Correspondence) and Atsushi Ogiwara
    • Journal Title

      JSBMS Letters

      Volume: 35(1) Pages: 4-12

    • URL

      http://www.jsbms.jp/

    • Related Report
      2012 Final Research Report
  • [Journal Article] バイオマーカーのプロテオミクス:液体クロマトグラフィー/タンデム質量分析を用いたプロテオーム統計解析法の開発とその応用(Proteomic biomarker discovery based on statistical analysis using liquid chromatography-tandem mass spectrometry)2010

    • Author(s)
      川上隆雄、荻原淳
    • Journal Title

      JSBMS Letters

      Volume: 35 Pages: 4-12

    • Related Report
      2010 Annual Research Report
  • [Journal Article] Disulfide proteomics : Current status in thioredoxin biochemistry and in dustrial researches

    • Author(s)
      Takao Kawakami, Hiroyuki Yano
    • Journal Title

      Japan Agricultural Research Quarterly

      Volume: (印刷中)

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Presentation] Identification of the phosphoproteins implicated in the high malignancy of ovarian clear cell adenocarcinoma using label-free LC-MS/MS-based comparative proteomic approach2012

    • Author(s)
      Kimura A
    • Organizer
      The 11th Human Proteome Organisation World Congress
    • Place of Presentation
      Boston, USA
    • Related Report
      2012 Annual Research Report
  • [Presentation] 「ニューロンボール法」を用いたシナプス前終末形成のプロテオミクス2012

    • Author(s)
      佐々木幸生
    • Organizer
      第35回日本神経科学大会
    • Place of Presentation
      名古屋国際会議場(名古屋)
    • Related Report
      2012 Annual Research Report
  • [Presentation] 病態診断のためのプロテオームバイオマーカー: 探索、検証、および大規模スクリーニングへの適用2010

    • Author(s)
      川上隆雄
    • Organizer
      第58回質量分析総合討論会
    • Place of Presentation
      つくば国際会議場、つくば
    • Related Report
      2012 Final Research Report
  • [Presentation] 肺腺癌組織の培養上清に含まれる分泌蛋白質群からの診断バイオマーカー候補の同定2010

    • Author(s)
      果然
    • Organizer
      日本ヒトプロテオーム機構第8回大会
    • Place of Presentation
      東京ベイホテル東急、東京
    • Related Report
      2012 Final Research Report
  • [Presentation] 肝臓癌形成のプロテオミクス:二次元液体クロマトグラフィー/タンデム質量分析による差分解析と新規診断マーカーの同定2010

    • Author(s)
      川上隆雄
    • Organizer
      日本ヒトプロテオーム機構第8回大会
    • Place of Presentation
      東京ベイホテル東急、東京
    • Related Report
      2012 Final Research Report
  • [Presentation] プロテオミクスで捕まえる疾患バイオマーカー2010

    • Author(s)
      川上隆雄
    • Organizer
      第35回医用マススペクトル学会年会
    • Place of Presentation
      金城学院大学、名古屋
    • Related Report
      2012 Final Research Report
  • [Presentation] Differential tissue proteome analysis in hepatocarcinogenesis using comparative two-dimensional liquid chromatographytandem mass spectrometry2010

    • Author(s)
      Takao Kawakami
    • Organizer
      HUPO 9th Annual World Congress
    • Place of Presentation
      Sydney, Australia.
    • Related Report
      2012 Final Research Report
  • [Presentation] 病態診断のためのプロテオームバイオマーカー:探索、検証、および大規模スクリーニングへの適用(Proteomic biomarkers for clinical diagnosis : discovery, validation, and application to mass-screening)2010

    • Author(s)
      川上隆雄、荻原淳
    • Organizer
      第58回質量分析総合討論会(日本質量分析学会)
    • Place of Presentation
      つくば国際会議場(茨城県つくば市)
    • Related Report
      2010 Annual Research Report
  • [Presentation] 肝臓癌形成のプロテオミクス:二次元液体クロマトグラフィー/タンデム質量分析による差分解析と新規診断マーカーの同定2010

    • Author(s)
      川上隆雄、金森英彬、永坂恵子、荻原淳、坂元宇亨, 他10名
    • Organizer
      日本プロテオーム学会第8回大会
    • Place of Presentation
      東京ベイホテル東急(千葉県浦安市)
    • Related Report
      2010 Annual Research Report
  • [Book] 翻訳後修飾のプロテオミクス 質量分析装置を中心とした分析法の原理-2011

    • Author(s)
      平野久・大野茂雄、川上隆雄(分担 6項目)
    • Total Pages
      243
    • Publisher
      講談社
    • Related Report
      2012 Final Research Report
  • [Book] 翻訳後修飾のプロテオミクス-質量分析装置を中心とした分析法の原理-2011

    • Author(s)
      川上隆雄(分担執筆), 平野久・大野茂男編著
    • Total Pages
      233
    • Publisher
      講談社
    • Related Report
      2011 Annual Research Report

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Published: 2010-08-23   Modified: 2019-07-29  

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