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Exploring evolution and figure of early fungal clade "LKM11"in oxygen-depleted environment

Research Project

Project/Area Number 22570105
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Biodiversity/Systematics
Research InstitutionHigashichikushi Junior College

Principal Investigator

NAGAHAMA Takahiko  東筑紫短期大学, 食物栄養学科, 講師 (10359169)

Co-Investigator(Kenkyū-buntansha) NAGANO Yuriko  独立行政法人海洋研究開発機構, 海洋・極限環境生物圏領域, 研究員 (30512917)
MIYAZAKI Masayuki  独立行政法人海洋研究開発機構, 海洋・極限環境生物圏領域, 技術研究副主事 (50399573)
Project Period (FY) 2010 – 2012
Project Status Completed (Fiscal Year 2012)
Budget Amount *help
¥4,550,000 (Direct Cost: ¥3,500,000、Indirect Cost: ¥1,050,000)
Fiscal Year 2012: ¥910,000 (Direct Cost: ¥700,000、Indirect Cost: ¥210,000)
Fiscal Year 2011: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Fiscal Year 2010: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Keywords菌類 / LKM11 クレード / 初期進化 / LKM11クレード
Research Abstract

For exploring early evolution of fungi, we investigated fungaldiversity in sediments colleted in eight lakes in west Japan. By using culture-independentmethod with fungal-specific PCR of SSU rDNA, we revealed an large extent of novel fungaldiversity in lacustrine environment. Four hundreds fungal phylotypes were obtained fromPCR clone libraries of six lakes successfully amplified. Novel (<97% identity) phylotypesare 213 (53.3%) in all fungal phylotypes. There were 187 phylotypes (46.8%) related toDikarya (Ascomycota + Basidiomycota). Whereas, Non-Dikarya fungi (Chytridiomycota +Blastocladiomycota + LKM11 etc) were 53.3%, 74.8% of which were estimated to be novelphylotypes with <97% affinities. All LKM11 phylotypes were novel. Early fungal lineagesoccupied a majority of all fungal phylotypes from the lacustrine environment in west Japanand indicated an unexpected diversity and novelty.

Report

(4 results)
  • 2012 Annual Research Report   Final Research Report ( PDF )
  • 2011 Annual Research Report
  • 2010 Annual Research Report
  • Research Products

    (16 results)

All 2012 2011 2010

All Journal Article (15 results) (of which Peer Reviewed: 14 results) Book (1 results)

  • [Journal Article] Fungal diversity in deep-sea extreme environments2012

    • Author(s)
      Nagano, Y. & Nagahama, T.
    • Journal Title

      Fungal Ecology

      Volume: 5巻 Issue: 4 Pages: 463-471

    • DOI

      10.1016/j.funeco.2012.01.004

    • Related Report
      2012 Annual Research Report 2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] The Hadal Amphipod Hirondellea gigas possessing a unique cellulase for digesting wooden debris buried in the deepest seafloor2012

    • Author(s)
      Kobayashi H, Hatada Y, Tsubouchi T, Nagahama T, Takami H
    • Journal Title

      PLoS One

      Volume: 7(8) Issue: 8 Pages: 42727-42727

    • DOI

      10.1371/journal.pone.0042727

    • Related Report
      2012 Annual Research Report 2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Halosarpheia japonica sp. nov.(Halosphaeriales, Ascomycota) from marine habitats in Japan.2012

    • Author(s)
      Abdel-Wahab, M.A. & Nagahama, T.
    • Journal Title

      Mycological Progress

      Volume: 11巻 Issue: 1 Pages: 85-92

    • DOI

      10.1007/s11557-010-0731-0

    • Related Report
      2012 Annual Research Report 2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Geofilum rubicundum gen. nov., sp. nov.,isolated from deep subseafloor sediment2012

    • Author(s)
      Miyazaki, M., Koide, O., Kobayashi, T.,Mori, K., Shimamura, S., Nunoura, T.,Imachi, H., Inagaki, F., Nagahama, T.,Nogi,Y.,Deguchi,S.& Takai,K.
    • Journal Title

      International Journal of Systematic and Evolutionary Microbiology

      Volume: 62巻 Issue: Pt_5 Pages: 1075-1080

    • DOI

      10.1099/ijs.0.032326-0

    • Related Report
      2012 Annual Research Report 2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Abdel‐Wahab, M. A. & Miyazaki, M.Molecular evidence that deep‐branching fungi are major fungal components in deep‐sea methane cold‐seep sediments2011

    • Author(s)
      Nagahama, T., Takahashi, E., Nagano,Y.
    • Journal Title

      Environmental Microbiology

      Volume: 13巻 Issue: 8 Pages: 2359-2370

    • DOI

      10.1111/j.1462-2920.2011.02507.x

    • Related Report
      2012 Final Research Report 2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Yeast extract stimulates production of glycolipid biosurfactants,mannosylerythritol lipids, by Pseudozyma hubeiensis SY622011

    • Author(s)
      Konishi, M., Nagahama, T., Fukuoka, T.,Morita, T., Imura, T., Kitamoto, D.&Hatada, Y.
    • Journal Title

      Journal of Bioscience and Bioengineering

      Volume: 111巻 Issue: 6 Pages: 702-705

    • DOI

      10.1016/j.jbiosc.2011.02.004

    • NAID

      110008672819

    • Related Report
      2012 Final Research Report 2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Microbulbifer chitinilyticus sp. nov. and Microbulbifer okinawensis sp. nov.,chitin-degrading bacteria isolated from mangrove forests2011

    • Author(s)
      Baba, A., Miyazaki, M., Nagahama, T.& Nogi, Y.
    • Journal Title

      International Journal of Systematic and Evolutionary Microbiology

      Volume: 61巻 Issue: 9 Pages: 2215-2220

    • DOI

      10.1099/ijs.0.024158-0

    • Related Report
      2012 Final Research Report 2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Gesasha (Halosphaeriales, Ascomycota), a new genus with three new species from the Gesashi mangroves in Japan2011

    • Author(s)
      Abdel-Wahab, M. A. & Nagahama, T.
    • Journal Title

      Nova Hedwigia

      Volume: 92巻 Issue: 3-4 Pages: 497-512

    • DOI

      10.1127/0029-5035/2011/0092-0497

    • Related Report
      2012 Final Research Report 2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 深海環境における真菌多様性2010

    • Author(s)
      長野由梨子&長濱統彦
    • Journal Title

      高圧力の科学と技術

      Volume: 20巻 Pages: 321-329

    • NAID

      10027681025

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Fungal diversity in deep-sea sediments -the presence of novel fungal groups2010

    • Author(s)
      Nagano, Y., Nagahama, T., Hatada, Y.,Nunoura, T., Takami, H., Miyazaki, J.,Takai, K. & Horikoshi, K.
    • Journal Title

      Fungal Ecology

      Volume: 3巻 Issue: 4 Pages: 316-325

    • DOI

      10.1016/j.funeco.2010.01.002

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Biosurfactant-producing yeast isolated from Calyptogena soyoae (deep-sea cold-seep clam) in the deep sea2010

    • Author(s)
      Konishi, M., Fukuoka, T., Nagahama, T.,Morita, T., Imura, T., Kitamoto, D. & Hatada, Y.
    • Journal Title

      Journal of Bioscience and Bioengineering

      Volume: 110巻 Issue: 2 Pages: 169-175

    • DOI

      10.1016/j.jbiosc.2010.01.018

    • NAID

      110007700565

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Fungal diversity in deep-sea sediments-the presence of novel fungal groups2010

    • Author(s)
      Yuriko Nagano
    • Journal Title

      Fungal Ecology

      Volume: 3 Pages: 316-325

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Biosurfactant-producing yeast isolated from Calyptogena soyoae (deep-sea cold-seep clam) in the deep sea2010

    • Author(s)
      Masaaki Konishi
    • Journal Title

      Journal of Bioscience and Bioengineering

      Volume: 110 Pages: 169-175

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Halosarpheia japonica sp.nov.(Halosphaeriales, Ascomycota) from marine habitats in Japan2010

    • Author(s)
      Mohamed Armed Abdel-Wahab
    • Journal Title

      Mycological Progress

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 深海環境における真菌多様性2010

    • Author(s)
      長野由梨子
    • Journal Title

      高圧力の科学と技術

      Volume: 20 Pages: 321-329

    • NAID

      10027681025

    • Related Report
      2010 Annual Research Report
  • [Book] Fungal Diversity in Deep-Sea Environments In Biology of Marine Fungi,Progress in Molecular and Subcellular Biology,Edited by C. Raghukumar2012

    • Author(s)
      Nagahama, T. & Nagano, Y. Cultured and Uncultured
    • Publisher
      Springer Berlin Heidelberg
    • Related Report
      2012 Final Research Report

URL: 

Published: 2010-08-23   Modified: 2019-07-29  

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