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Technologicaldevelopment for construction of synthetic proteins that facilitate membrane protein crystallization

Research Project

Project/Area Number 22570114
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Structural biochemistry
Research InstitutionKyoto University

Principal Investigator

NOMURA Norimichi  京都大学, 大学院・医学研究科, 助教 (10314246)

Co-Investigator(Renkei-kenkyūsha) IWATA So  京都大学, 大学院・医学研究科, 教授 (60452330)
Project Period (FY) 2010 – 2012
Project Status Completed (Fiscal Year 2012)
Budget Amount *help
¥4,680,000 (Direct Cost: ¥3,600,000、Indirect Cost: ¥1,080,000)
Fiscal Year 2012: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2011: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2010: ¥2,340,000 (Direct Cost: ¥1,800,000、Indirect Cost: ¥540,000)
Keywords膜蛋白質 / X線結晶構造解析 / 結晶化リガンド / 抗体フラグメント / ファージディスプレイ / 膜輸送体 / プァージディスプレイ
Research Abstract

Co-crystallization of membrane proteins with antibody fragments may emerge as a general tool to facilitate crystal growth and improve crystal quality. The bound antibody fragment enlarges the hydrophilic part of the mostly hydrophobic membrane protein, thereby increasing the interaction area for possible protein-protein contacts in the crystal. To serve as a ‘crystallizing ligand’, the antibody fragment has to recognize an epitope that is only present in the native conformation (and not in the denatured state) of the membrane protein, bind with high affinity, and form stable and rigid complexes. In this project, we developed a fast and reliable method for generating crystallizing ligands against various mammalian G-protein coupled receptors (GPCRs) and transporters in a phage display format. Using this method, the crystal structure of a mammalian facilitative glucose transporter complexed with a Fv fragment has been determined at 3.5Åresolution.

Report

(4 results)
  • 2012 Annual Research Report   Final Research Report ( PDF )
  • 2011 Annual Research Report
  • 2010 Annual Research Report
  • Research Products

    (10 results)

All 2012 2011 2010

All Journal Article (4 results) (of which Peer Reviewed: 4 results) Presentation (3 results) Patent(Industrial Property Rights) (3 results) (of which Overseas: 1 results)

  • [Journal Article] G protein-coupled receptor inactivation by an allosteric inverse-agonist antibody2012

    • Author(s)
      Hino T., et al
    • Journal Title

      Nature

      Volume: 482 Issue: 7384 Pages: 237-40

    • DOI

      10.1038/nature10750

    • Related Report
      2012 Final Research Report 2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Platform for the rapid construction and evaluation of GPCRs for crystallography in Saccharoroyces cerevisiae.2012

    • Author(s)
      Shiroishi M., et al.
    • Journal Title

      Micorb, Cell Fact.

      Volume: 11 Issue: 1 Pages: 78-78

    • DOI

      10.1186/1475-2859-11-78

    • Related Report
      2012 Annual Research Report 2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Cloning, expression and purification of the anion exchanger 1 homologue from the basidiomycete Phanerochaete chrysosporium2011

    • Author(s)
      Tokuda N, Igarashi K, Shimamura T(co-1st author), Yurugi-Kobayashi T, Shiroishi M, Ito K, Sugawara T, Asada H, Murata T, Nomura N, Iwata S, Kobayashi T.
    • Journal Title

      Protein. Expr. Purif.

      Volume: 79(1) Issue: 1 Pages: 81-7

    • DOI

      10.1016/j.pep.2011.04.006

    • NAID

      120003255719

    • Related Report
      2012 Final Research Report 2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Evaluation of the Pichia pastoris expression system for the production of GPCRs for structural analysis2011

    • Author(s)
      Asada, H., Uemura, T., Yurugi-Kobayashi, T., Shiroishi, M., Shimamura, T., Tsujimoto, H., Ito, K., Sugawara, T., Nakane, T., Nomura, N., Murata, T., Haga, T., Iwata, S., Kobayashi, T
    • Journal Title

      Microbial Cell Factories

      Volume: 10 Issue: 1 Pages: 24-24

    • DOI

      10.1186/1475-2859-10-24

    • Related Report
      2012 Final Research Report 2011 Annual Research Report
    • Peer Reviewed
  • [Presentation] 膜蛋白質のX線結晶構造解析を支援する抗体工学技術の確立2011

    • Author(s)
      野村紀通,他
    • Organizer
      第84回日本生化学会大会 シンポジウム「多様な生物種における膜タンパク質の機能理解を目指した新戦略」
    • Place of Presentation
      京都
    • Year and Date
      2011-09-24
    • Related Report
      2012 Final Research Report
  • [Presentation] 膜蛋白質のX線結晶構造解析を支援する抗体工学技術の確立2011

    • Author(s)
      野村紀通, ら
    • Organizer
      第84回日本生化学会大会シンポジウム「多様な生物種における膜タンパク質の機能理解を目指した新戦略」
    • Place of Presentation
      京都国際会館
    • Year and Date
      2011-09-24
    • Related Report
      2011 Annual Research Report
  • [Presentation] 抗体フラグメントを用いたヒト膜タンパク質の結晶構造解析2010

    • Author(s)
      岩田想, 野村紀通
    • Organizer
      BioJapan2014アカデミックシーズ発表会
    • Place of Presentation
      パシフィコ横浜(横浜市西区)
    • Year and Date
      2010-09-29
    • Related Report
      2010 Annual Research Report
  • [Patent(Industrial Property Rights)] 抗ヒトバンド3モノクローナル抗体2011

    • Inventor(s)
      小林拓也 他
    • Industrial Property Rights Holder
      科学技術振興機構
    • Industrial Property Number
      2011-246364
    • Filing Date
      2011-11-10
    • Related Report
      2012 Final Research Report
  • [Patent(Industrial Property Rights)] 抗ヒトバンド3モノクローナル抗体2011

    • Inventor(s)
      小林拓也, ら
    • Industrial Property Rights Holder
      科学技術振興機構
    • Industrial Property Number
      2011-246364
    • Filing Date
      2011-11-10
    • Related Report
      2011 Annual Research Report
  • [Patent(Industrial Property Rights)] 膜蛋白質の立体構造を認識するモノクローナル抗体のスクリーニング方法2010

    • Inventor(s)
      日野智也, 村田武士, 荒川孝俊, 野村紀通, 小林拓也, 岩田想
    • Industrial Property Rights Holder
      日野智也, 村田武士, 荒川孝俊, 野村紀通, 小林拓也, 岩田想
    • Filing Date
      2010-04-28
    • Related Report
      2010 Annual Research Report
    • Overseas

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Published: 2010-08-23   Modified: 2019-07-29  

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