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Structure analysis of Nectin and Nectin like protein family

Research Project

Project/Area Number 22570115
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Structural biochemistry
Research InstitutionOsaka University

Principal Investigator

SUZUKI Mamoru  大阪大学, たんぱく質研究所, 准教授 (40280507)

Project Period (FY) 2010 – 2012
Project Status Completed (Fiscal Year 2012)
Budget Amount *help
¥4,680,000 (Direct Cost: ¥3,600,000、Indirect Cost: ¥1,080,000)
Fiscal Year 2012: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2011: ¥1,040,000 (Direct Cost: ¥800,000、Indirect Cost: ¥240,000)
Fiscal Year 2010: ¥2,340,000 (Direct Cost: ¥1,800,000、Indirect Cost: ¥540,000)
Keywords構造生物 / 細胞接着分子 / 構造生物学 / 細胞接着 / ネクチン様分子 / ネクチン / X線結晶学
Research Abstract

We determined the crystal structures of the entire extracellular region of nectin-1,2,3. In the crystal, nectin formed a V-shaped homophilic dimer through the first Ig-like domain. Structure-based site-directed mutagenesis experimental results indicate that, in contrast with the previous notion, our structure represents a cis-dimer. Thus, our findings clearly reveal the structural basis for the cis-dimerization of nectins through the first Ig-like domains.

Report

(4 results)
  • 2012 Annual Research Report   Final Research Report ( PDF )
  • 2011 Annual Research Report
  • 2010 Annual Research Report
  • Research Products

    (40 results)

All 2013 2012 2011 2010 Other

All Journal Article (11 results) (of which Peer Reviewed: 11 results) Presentation (25 results) Remarks (4 results)

  • [Journal Article] Crystal structure of a Bombyx mori Sigma-1 class glutathione transferase exhibiting prostaglandin E synthase activity2013

    • Author(s)
      Yamamoto, K., Higashiura, A., Suzuki,M., Aritake, K.Urade, Y., Udome, N. Nakagawa, A
    • Journal Title

      Biochim Biophys Acta

      Volume: 1830 Pages: 3711-3718

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Crystal structure of a Bombyx mori Sigma-1 class glutathione transferase exhibiting prostaglandin E synthase activity2013

    • Author(s)
      Yamamoto, K.
    • Journal Title

      Biochim Biophys Acta.

      Volume: 1830 Issue: 6 Pages: 3711-3718

    • DOI

      10.1016/j.bbagen.2013.02.021

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Crystal sample pins and a storage cassette system compatible with the protein crystallography beamlines at both the Photon Factory and SPring-8.2013

    • Author(s)
      Fujihashi, F.
    • Journal Title

      J. Appl. Cryst.

      Volume: 45 Issue: 6 Pages: 1156-1161

    • DOI

      10.1107/s002188981203734x

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structural basis for catalytic activity of a silkworm Delta-class glutathione transferase2012

    • Author(s)
      Yamamoto, K., Usuda, K., Kakuta, Y., Makoto Kimura, M., Higashiura, A., Nakagawa, A., Suzuki, M
    • Journal Title

      Biochim Biophys Acta.

      Volume: 1820 Pages: 1469-1474

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Beamline AR-NW12A: high-throughput beamline for macromolecular crystallography at the Photon Factory2012

    • Author(s)
      Chavas LM, Matsugaki N, Yamada Y, Hiraki M, Igarashi N, Suzuki M, Wakatsuki S
    • Journal Title

      J Synchrotron Radiat

      Volume: 19 Pages: 450-454

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Structural basis for catalytic activity of a silkworm Delta-class glutathione transferase.2012

    • Author(s)
      Yamamoto, K
    • Journal Title

      Biochim Biophys Acta.

      Volume: 1820 Issue: 10 Pages: 1469-1474

    • DOI

      10.1016/j.bbagen.2012.04.022

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Beamline AR-NW12A: high-throughput beamline for macromolecular crystallography at the Photon Factory.2012

    • Author(s)
      L. M. G. Chavas
    • Journal Title

      J Synchrotron Radiat.

      Volume: 19 Issue: 3 Pages: 450-454

    • DOI

      10.1107/s0909049512009727

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Crystal structure of the cis-dimer of nectin-1 : Implications for the architecture of cell-cell junctions2011

    • Author(s)
      Narita, H., Yamamoto, Y., Suzuki.M., Miyazaki, N., Yoshida, A., Kawai, K., Iwasaki, K., Nakagawa, A., Takai, Y., Sakisaka, T
    • Journal Title

      The Journal of Biological Chemistry

      Volume: 286 Pages: 12659-12669

    • NAID

      120006770866

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Refolding, crystallization and preliminary X-ray crystallographic study of the whole extracellular regions of nectins2011

    • Author(s)
      Narita, H., Nakagawa, A., Yamamoto, Y., Sakisaka, T., Takai, Y., Suzuki.M.
    • Journal Title

      Acta Crystallographica Section F

      Volume: 67 Pages: 344-348

    • Related Report
      2012 Final Research Report 2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Crystal Structure of the cis-Dimer of Nectin-1 : implications for the architecture of cell-cell junctions2011

    • Author(s)
      Narita H, Yamamoto Y, Suzuki M, Miyazaki N, Yoshida A, Kawai K, Iwasaki K, Nakagawa A, Takai Y, Sakisaka T
    • Journal Title

      J.Biol.Chem.

      Volume: 286 Pages: 12659-12669

    • NAID

      120006770866

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Crystal structure of the cis-dimer of nectin-1 : Implications for the architecture of cell-cell junctions2011

    • Author(s)
      Narita, H., Yamamoto, Y., Suzuki.M., Miyazaki, N., Yoshida, A., Kawai, K., Iwasaki, K., Nakagawa, A., Takai, Y., Sakisaka, T.
    • Journal Title

      The Journal of Biological Chemistry

      Volume: 41(online)

    • NAID

      120006770866

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Presentation] ネクチン・ネクル分子群の構造解析2013

    • Author(s)
      成田宏隆・中川敦史・鈴木守
    • Organizer
      物構研サイエンスフェスタ
    • Place of Presentation
      つくば
    • Related Report
      2012 Final Research Report
  • [Presentation] ネクチン・ネクル分子群の構造解析2013

    • Author(s)
      鈴木守
    • Organizer
      物構研サイエンスフェスタ
    • Place of Presentation
      つくば国際会議場エポカル
    • Related Report
      2012 Annual Research Report
  • [Presentation] A little more until sunrise2012

    • Author(s)
      Mamoru Suzuki
    • Organizer
      Sapporo Symposiumon Advanced Protein Crystallography.(招待講演)
    • Place of Presentation
      札幌
    • Year and Date
      2012-03-17
    • Related Report
      2012 Final Research Report
  • [Presentation] A little more until sunrize2012

    • Author(s)
      Mamoru Suzuki
    • Organizer
      Sapporo Symposium on Advanced Protein Crystallography
    • Place of Presentation
      札幌(招待講演)
    • Year and Date
      2012-03-17
    • Related Report
      2011 Annual Research Report
  • [Presentation] 細胞接着装置の制御に関わるLNX1PDZ2の構造・機能解析2012

    • Author(s)
      中倉 由香子, 秋吉 由佳里, 合田 名都子, 成田 宏隆, 鈴木 守, 天野 剛志, 浜田大三, 藤原 芳江, 中川 敦史, 古瀬 幹夫, 廣明 秀一
    • Organizer
      第35回日本分子生物学会年会
    • Place of Presentation
      福岡
    • Related Report
      2012 Final Research Report
  • [Presentation] Crystal Structure Analysis of Nectin and Nectin-Like-Molecule Family(II)2012

    • Author(s)
      Mamoru Suzuki, Hirotaka Narita, Atsushi Nakagawa
    • Organizer
      Meeting of the American CrystallographicAssociation
    • Place of Presentation
      Boston, MA, USA
    • Related Report
      2012 Final Research Report
  • [Presentation] 細胞接着分子ネクチンおよびネクチン様分子のX線結晶構造2012

    • Author(s)
      成田宏隆・藤原芳江・中川敦史・鈴木 守
    • Organizer
      第29回PFシンポジウム
    • Place of Presentation
      つくば
    • Related Report
      2012 Final Research Report
  • [Presentation] Crystal Structure Analysis of Nectin and Nectin-Like-Molecule Family(II)2012

    • Author(s)
      Mamoru Suzuki
    • Organizer
      Meeting of the American Crystallographic Association
    • Place of Presentation
      Boston, MA, USA
    • Related Report
      2012 Annual Research Report
  • [Presentation] 細胞接着装置の制御に関わるLNX1PDZ2の構造・機能解析2012

    • Author(s)
      中倉由香子
    • Organizer
      第85回日本生化学会
    • Place of Presentation
      福岡国際会議場
    • Related Report
      2012 Annual Research Report
  • [Presentation] 細胞接着分子ネクチンおよびネクチン様分子のX線結晶構造2012

    • Author(s)
      成田宏隆・藤原芳江・中川敦史・鈴木守
    • Organizer
      第28回PFシンポジウム
    • Place of Presentation
      つくば
    • Related Report
      2011 Annual Research Report
  • [Presentation] 細胞接着分子ネクチンおよびネクチン様分子のX線結晶構造解析2011

    • Author(s)
      成田 宏隆、中川 敦史、鈴木 守
    • Organizer
      日本結晶学会年会
    • Place of Presentation
      札幌
    • Related Report
      2012 Final Research Report 2011 Annual Research Report
  • [Presentation] ネ クチン・ネクル分子群の構造解析の試み2011

    • Author(s)
      成田 宏隆、中川 敦史、鈴木 守
    • Organizer
      第28回PFシンポジウム
    • Place of Presentation
      つくば
    • Related Report
      2012 Final Research Report
  • [Presentation] Crystal structure analysis of nectin and nectin like molecule family2011

    • Author(s)
      Mamoru Suzuki, Hirotaka Narita, Atsushi Nakagawa
    • Organizer
      Meeting of the American Crystallographic Association
    • Place of Presentation
      ニューオリンズ,USA
    • Related Report
      2012 Final Research Report
  • [Presentation] ネクチン・ネクル分子群の構造解析の試み2011

    • Author(s)
      成田宏隆、中川敦史、鈴木守
    • Organizer
      第28回PFシンポジウム
    • Place of Presentation
      つくば (震災のため中止、要旨はシンポジウムのWeb上に公開済み)
    • Related Report
      2012 Final Research Report
  • [Presentation] 細胞間接着・細胞運動に関わるタンパク質の構造解析に向けた取組み2011

    • Author(s)
      成田宏隆、中川敦史、鈴木守
    • Organizer
      第24回日本放射光学会放射光科学合同シンポジウム
    • Place of Presentation
      つくば
    • Related Report
      2012 Final Research Report
  • [Presentation] Crystel structure analysis of nectin and nectin like molecule family2011

    • Author(s)
      Mamoru Suzuki, Hirotaka Narita, Atsushi Nakagawa
    • Organizer
      アメリカ結晶学会
    • Place of Presentation
      米国ニューオリンズ
    • Related Report
      2011 Annual Research Report
  • [Presentation] ネクチン・ネクル分子群の構造解析の試み2011

    • Author(s)
      成田宏隆、中川敦史、鈴木守
    • Organizer
      第28回PFシンポジウム
    • Place of Presentation
      つくば
    • Related Report
      2011 Annual Research Report
  • [Presentation] 細胞間接着・細胞運動に関わるタンパク質の構造解析に向けた取組み2011

    • Author(s)
      成田宏隆、中川敦史、鈴木守
    • Organizer
      第24回日本放射光学会放射光科学合同シンポジウム
    • Place of Presentation
      つくば国際会議場
    • Related Report
      2010 Annual Research Report
  • [Presentation] ネクチン・ネクル分子群の構造解析の試み2011

    • Author(s)
      成田宏隆、中川敦史、鈴木守
    • Organizer
      第28回PFシンポジウム
    • Place of Presentation
      つくば国際会議場(震災のため中止、要旨はシンポジウムのWeb上に公開済み)
    • Related Report
      2010 Annual Research Report
  • [Presentation] ネクチン3のC末端配列と結合したアファディンPDZドメインの構造解析2010

    • Author(s)
      藤原芳江、合田名都子、里村香織、成田宏隆、中川敦史、匂坂敏朗、鈴木守、廣明秀一
    • Organizer
      BMB2010(第33回日本分子生物学会年会・第83回日本生化学会大会 合同大会)
    • Place of Presentation
      神戸
    • Related Report
      2012 Final Research Report
  • [Presentation] 細胞間接着分子ネクチン-2の構造生物学的研究2010

    • Author(s)
      成田宏隆、中川敦史、岩崎憲治、匂坂敏朗、高井義美、鈴木守
    • Organizer
      日本結晶学会年会
    • Place of Presentation
      大阪
    • Related Report
      2012 Final Research Report
  • [Presentation] ネクチンファミリーの結晶構造解析2010

    • Author(s)
      成田宏隆、中川敦史、岩崎憲治、匂坂敏朗、高井義美、鈴木守
    • Organizer
      第10回日本蛋白質科学会年会
    • Place of Presentation
      札幌
    • Related Report
      2012 Final Research Report
  • [Presentation] ネクチンファミリーの結晶構造解析2010

    • Author(s)
      成田宏隆、中川敦史、岩崎憲治、匂坂敏朗、高井義美、鈴木守
    • Organizer
      第10回日本蛋白質科学会年会
    • Place of Presentation
      札幌コンベンションセンター
    • Related Report
      2010 Annual Research Report
  • [Presentation] 細胞間接着分子ネクチン-2の構造生物学的研究2010

    • Author(s)
      成田宏隆、中川敦史、岩崎憲治、匂坂敏朗、高井義美、鈴木守
    • Organizer
      日本結晶学会年会
    • Place of Presentation
      大阪大学
    • Related Report
      2010 Annual Research Report
  • [Presentation] ネクチン3のC末端配列と結合したアファディンPDZドメインの構造解析2010

    • Author(s)
      藤原芳江、合田名都子、里村香織、成田宏隆、中川敦史、匂坂敏朗、鈴木守、廣明秀一
    • Organizer
      BMB 2010(第33回日本分子生物学会年会・第83回日本生化学会大会 合同大会)
    • Place of Presentation
      神戸ポートアイランド
    • Related Report
      2010 Annual Research Report
  • [Remarks]

    • URL

      http://www.protein.osaka-u.ac.jp/rcsfp/supracryst/suzuki/index_ja.html

    • Related Report
      2012 Final Research Report
  • [Remarks] Suzuki' s Home Page

    • URL

      http://www.protein.osaka-u.ac.jp/rcsfp/supracryst/suzuki/

    • Related Report
      2012 Annual Research Report
  • [Remarks]

    • URL

      http://www.protein.osaka-u.ac.jp/rcsfp/supracryst/suzuki/index_ja.html

    • Related Report
      2011 Annual Research Report
  • [Remarks]

    • URL

      http://www.protein.osaka-u.ac.jp/rcsfp/supracryst/suzuki/index_ja.html

    • Related Report
      2010 Annual Research Report

URL: 

Published: 2010-08-23   Modified: 2019-07-29  

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