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Functional and kinetic analysis of the inter-domain communication network of the chaperonin GroEL

Research Project

Project/Area Number 22570119
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Structural biochemistry
Research InstitutionTottori University

Principal Investigator

MIZOBATA Tomohiro  鳥取大学, 大学院・工学研究科, 准教授 (50263489)

Project Period (FY) 2010 – 2012
Project Status Completed (Fiscal Year 2012)
Budget Amount *help
¥4,810,000 (Direct Cost: ¥3,700,000、Indirect Cost: ¥1,110,000)
Fiscal Year 2012: ¥780,000 (Direct Cost: ¥600,000、Indirect Cost: ¥180,000)
Fiscal Year 2011: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2010: ¥2,860,000 (Direct Cost: ¥2,200,000、Indirect Cost: ¥660,000)
Keywords変性とフォールディング / シャペロニン / ストップト・フロー解析 / 円順列変異 / フォールディング / ストップト・フロー
Research Abstract

A combination of circular permutation and stopped-flow fluorescence analysis was utilized to probe the relationship between the molecular mechanism of GroEL-facilitated protein folding and the unique three-domain subunit structure of the GroEL protein. Through analysis of multiple circularly permuted GroEL variants, we succeeded in correlating a specific, domain-dependent conformational change to an important functional aspect of the chaperonin mechanism. Additionally, our results prompt a reevaluation of the conventional mechanism of GroEL-facilitated folding.

Report

(4 results)
  • 2012 Annual Research Report   Final Research Report ( PDF )
  • 2011 Annual Research Report
  • 2010 Annual Research Report
  • Research Products

    (45 results)

All 2012 2011 2010 Other

All Journal Article (15 results) (of which Peer Reviewed: 12 results) Presentation (29 results) (of which Invited: 3 results) Remarks (1 results)

  • [Journal Article] Suppression of Sup35 amyloid fibril formation by group II chaperonin from Thermoplasma acidophilum2012

    • Author(s)
      Noi, K., Kitamura, A., Hirai, H.,Hongo, K., Sakurai, T., Mizobata, T., and Kawata, Y
    • Journal Title

      Am. J. Mol. Biol

      Volume: 2 Pages: 265-375

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Role of C-terminal negative charges and tyrosine residues in fibril formation of alpha-synuclein2012

    • Author(s)
      Izawa, Y., Tateno, H., Kameda, H., Hirakawa, K., Hato, K., Yagi, H.,Hongo, K., Mizobata, T., and Kawata,Y
    • Journal Title

      Brain and behavior

      Volume: 2 Pages: 595-605

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Varied effects of Pyrococcus furiosus prefoldin and P2012

    • Author(s)
      Hongo, K., Itai, H., Mizobata, T., and Kawata, Y
    • Journal Title

      furiosus chaperonin on the refolding reactions of substrate proteins

      Volume: 151 Pages: 383-390

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Role of C-terminal negative charges and tyrosine residues in fibril formation of alpha-synuclein2012

    • Author(s)
      Izawa, Y. et al.
    • Journal Title

      Brain and Behavior

      Volume: 2 Issue: 5 Pages: 595-605

    • DOI

      10.1002/brb3.86

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Suppression of Sup35 amyloid fibril formation by group II chaperonin from Thermoplasma acidophilum2012

    • Author(s)
      Noi, K. et al.
    • Journal Title

      American Journal of Molecular Biology

      Volume: 2 Issue: 03 Pages: 265-275

    • DOI

      10.4236/ajmb.2012.23028

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Varied effects of Pyrococcus furiosus prefoldin and P.furiosus chaperonin on the refolding reactions of substrate proteins2012

    • Author(s)
      Hongo, K., et al
    • Journal Title

      Journal of Biochemistry

      Volume: 151 Issue: 4 Pages: 383-390

    • DOI

      10.1093/jb/mvr141

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Probing the functional mechanism of Escherichia coli GroEL using circular permutation2011

    • Author(s)
      Mizobata, T., Uemura, T., Isaji, K.,Hirayama, T., Hongo, K., and Kawata,Y
    • Journal Title

      PLoS One

      Volume: 6

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Covalent structural changes in unfolded GroES that lead to amyloid fibril formation detected by NMR: insight into intrinsically disordered proteins2011

    • Author(s)
      Iwasa, H., Meshitsuka, S., Hongo,K., Mizobata, T., and Kawata, Y.
    • Journal Title

      J. Biol. Chem

      Volume: 286 Pages: 21796-21805

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Covalent structural changes in unfolded GroES that lead to amyloid fibril formation detected by NMR : Insight into intrinsically disordered proteins2011

    • Author(s)
      Hisanori Iwasa, Shunsuke Meshitsuka, Kunihiro Hongo, Tomohiro Mizobata, Yasushi Kawata
    • Journal Title

      J.Biol.Chem.

      Volume: 286 Issue: 24 Pages: 21796-21805

    • DOI

      10.1074/jbc.m111.228445

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Probing the Functional Mechanism of Escherichia coli GroEL Using Circular Permutation2011

    • Author(s)
      Tomohiro Mizobata, Tatsuya Uemura, Kazuhiro Isaji, Takuma Hirayama, Kunihiro Hongo, Yasushi Kawata
    • Journal Title

      PLoS ONE

      Volume: 6 Issue: 10 Pages: e26462-e26462

    • DOI

      10.1371/journal.pone.0026462

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Isolation of short peptide fragments from alpha-synuclein fibril core identifies a residue important for fibril nucleation: a possible implication for diagnostic applications2010

    • Author(s)
      Yagi, H., Takeuchi, H., Ogawa, S., Ito,N., Sakane, I., Hongo, K., Mizobata,T., Goto, Y., and Kawata, Y
    • Journal Title

      Biochim. Biophys. Acta

      Volume: 1804 Pages: 2077-2087

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] 「タンパク質のフォールディングを補助するシャペロニンの構造と働き」2010

    • Author(s)
      溝端知宏,河田康志
    • Journal Title

      鳥取大学大学院工学研究科/工学部研究報告

      Volume: 41 Pages: 29-35

    • Related Report
      2012 Final Research Report
  • [Journal Article] ヤヌスの二つの顔:大腸菌シャペロニンGroELの頂上ドメインに関する最近の研究2010

    • Author(s)
      溝端知宏, 河田康志
    • Journal Title

      生化学

      Volume: 82 Pages: 612-617

    • NAID

      10026607651

    • Related Report
      2010 Annual Research Report
  • [Journal Article] タンパク質のフォールディングを補助するシャペロニンの構造と働き2010

    • Author(s)
      溝端知宏, 河田康志
    • Journal Title

      鳥取大学大学院工学研究科/工学部研究報告

      Volume: 41 Pages: 29-35

    • Related Report
      2010 Annual Research Report
  • [Journal Article] Isolation of short peptide fragments from alpha-synuclein fibril core identifies a residue important for fibril nucleation : a possible implication for diagnostic applications2010

    • Author(s)
      Hisashi Yagi, et al.
    • Journal Title

      Biochimica et Biophysica Acta

      Volume: 1804 Pages: 2077-2087

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Presentation] CXXCモチーフを導入したシャペロニン変異体の機能解析2012

    • Author(s)
      池田 雅史
    • Organizer
      第85回日本生化学会大会
    • Place of Presentation
      福岡国際会議場・マリンメッセ福岡
    • Year and Date
      2012-12-16
    • Related Report
      2012 Final Research Report
  • [Presentation] ストップトフロー解析法を用いた円順列変異型GroELCP86の機能的,速度論的解析2012

    • Author(s)
      水田 敏史
    • Organizer
      第85回日本生化学会大会
    • Place of Presentation
      福岡国際会議場・マリンメッセ福岡
    • Year and Date
      2012-12-16
    • Related Report
      2012 Final Research Report
  • [Presentation] シングルリングGroEL変異体におけるアピカルドメインの動きと働き2012

    • Author(s)
      安藤 華純
    • Organizer
      第85回日本生化学会大会
    • Place of Presentation
      福岡国際会議場・マリンメッセ福岡
    • Year and Date
      2012-12-16
    • Related Report
      2012 Final Research Report
  • [Presentation] Elucidating the Molecular Mechanism of Chaperonin-facilitated Protein Folding2012

    • Author(s)
      Mizobata Tomohiro
    • Organizer
      2nd Seminar on Green Sustainable Chemistry in Tottori
    • Place of Presentation
      鳥取大学
    • Year and Date
      2012-12-03
    • Related Report
      2012 Final Research Report
  • [Presentation] 大腸菌GroELの機能発現における頂上ドメインの動きと役割2012

    • Author(s)
      溝端 知宏
    • Organizer
      大阪大学蛋白質研究所セミナー「分子シャペロンの機能発現の 新展開と細胞制御」
    • Place of Presentation
      大阪大学蛋白質研究所
    • Year and Date
      2012-11-15
    • Related Report
      2012 Final Research Report
  • [Presentation] GroEL円順列変異体CP86のストップトフロー機能解析2012

    • Author(s)
      Mizuta Toshifumi
    • Organizer
      第50回日本生物物理学会年会
    • Place of Presentation
      名古屋大学 東山キャンパス
    • Year and Date
      2012-09-22
    • Related Report
      2012 Final Research Report
  • [Presentation] GroEL Cavity内部へのジスルフィド交換モチーフ導入の試み2012

    • Author(s)
      池田 雅史
    • Organizer
      第84回日本生化学会大会
    • Place of Presentation
      国立京都国際会館
    • Year and Date
      2012-09-22
    • Related Report
      2012 Final Research Report
  • [Presentation] 円順列変異体GroELを用いたシャペロニンの機能解析2012

    • Author(s)
      溝端知宏
    • Organizer
      第12回日本蛋白質科学会年会
    • Place of Presentation
      名古屋国際会議場
    • Year and Date
      2012-06-20
    • Related Report
      2012 Final Research Report
  • [Presentation] Using circular permutation to probe various characteristics of E. coli GroEL2012

    • Author(s)
      Mizobata Tomohiro
    • Organizer
      2012 Meeting on Molecular Chaperones and Stress Responses
    • Place of Presentation
      Cold Spring Harbor Laboratory, New York
    • Year and Date
      2012-05-03
    • Related Report
      2012 Final Research Report
  • [Presentation] GroEL円順列変異体CP376の蛍光ストップトフローを用いた解析2011

    • Author(s)
      伊佐治 算浩
    • Organizer
      第84回日本生化学会大会
    • Place of Presentation
      国立京都国際会館
    • Year and Date
      2011-09-23
    • Related Report
      2012 Final Research Report 2011 Annual Research Report
  • [Presentation] シャペロニンGroELの機能的構造変化の中心点HingeII 部位のGly192残基の変異体機能解析2011

    • Author(s)
      荒木 紀帆
    • Organizer
      第84回日本生化学会大会
    • Place of Presentation
      国立京都国際会館
    • Year and Date
      2011-09-23
    • Related Report
      2012 Final Research Report
  • [Presentation] GroEL円順列変異体CP254の構造・機能相関解析2011

    • Author(s)
      岡田 拓也
    • Organizer
      第84回日本生化学会大会
    • Place of Presentation
      国立京都国際会館
    • Year and Date
      2011-09-23
    • Related Report
      2012 Final Research Report 2011 Annual Research Report
  • [Presentation] シャペロニンGroELの機能的構造変化の中心点HingeII部位のGly192残基の変異体機能解析2011

    • Author(s)
      荒木紀帆
    • Organizer
      第84回日本生化学会大会
    • Place of Presentation
      国立京都国際会館
    • Year and Date
      2011-09-23
    • Related Report
      2011 Annual Research Report
  • [Presentation] GroEL Cavity内部へのジスルフィド交換モチーフ導入の試み2011

    • Author(s)
      池田雅史
    • Organizer
      第84回日本生化学会大会
    • Place of Presentation
      国立京都国際会館
    • Year and Date
      2011-09-22
    • Related Report
      2011 Annual Research Report
  • [Presentation] 円順列変異型GroELの機能的性質とタンパク質工学2011

    • Author(s)
      溝端 知宏
    • Organizer
      第52回日本生化学会 中国・四国支部例会
    • Place of Presentation
      広島大学 広仁会館
    • Year and Date
      2011-05-13
    • Related Report
      2012 Final Research Report
  • [Presentation] 円順列変異型GroELの機能的性質とタンパク質工学2011

    • Author(s)
      溝端知宏
    • Organizer
      第52回日本生化学会中国・四国支部例会
    • Place of Presentation
      広島大学広仁会館
    • Year and Date
      2011-05-13
    • Related Report
      2011 Annual Research Report
  • [Presentation] Modulation of the Altered Functional Characteristics of Circularly Permuted GroEL through the Introduction of Disulfide Bonds2010

    • Author(s)
      Mizobata Tomohiro
    • Organizer
      The 4th International Symposium on "Molecular Science of Fluctuations toward Biological Functions"
    • Place of Presentation
      Piazza Omi, Shiga Japan
    • Year and Date
      2010-11-30
    • Related Report
      2012 Final Research Report 2010 Annual Research Report
  • [Presentation] Altered Functional Characteristics of Circularly Permuted GroEL Variants2010

    • Author(s)
      Tomohiro Mizobata
    • Organizer
      The 3rd International Symposium on "Protein Community"
    • Place of Presentation
      Hotel Nikko Nara, Nara Japan
    • Year and Date
      2010-09-14
    • Related Report
      2012 Final Research Report 2010 Annual Research Report
  • [Presentation] Using circular permutation to probe various characteristics of E. coli GroEL

    • Author(s)
      Tomohiro Mizobata
    • Organizer
      2012 Meeting on Molecular Chaperones and Stress Responses
    • Place of Presentation
      Cold Spring Harbor Laboratory, New York
    • Related Report
      2012 Annual Research Report
  • [Presentation] 円順列変異体GroELを用いたシャペロニンの機能解析

    • Author(s)
      溝端知宏
    • Organizer
      第12回日本蛋白質科学会年会
    • Place of Presentation
      名古屋国際会議場
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] GroEL円順列変異体CP86のストップトフロー機能解析

    • Author(s)
      Toshifumi Mizuta
    • Organizer
      第50回日本生物物理学会年会
    • Place of Presentation
      名古屋大学 東山キャンパス
    • Related Report
      2012 Annual Research Report
  • [Presentation] アルファシヌクレインアミロイド線維形成を抑制するキノコ由来ケミカルシャペロンの探索

    • Author(s)
      亀田 啓
    • Organizer
      第85回日本生化学会大会
    • Place of Presentation
      福岡国際会議場・マリンメッセ福岡
    • Related Report
      2012 Annual Research Report
  • [Presentation] アントシアニンによる脳神経変性病原因タンパク質Aベータとアルファシヌクレインのアミロイド線維形成抑制

    • Author(s)
      河田 康志
    • Organizer
      第85回日本生化学会大会
    • Place of Presentation
      福岡国際会議場・マリンメッセ福岡
    • Related Report
      2012 Annual Research Report
  • [Presentation] シャペロニンGroELのHinge II部位Gly192残基の変異体機能解析

    • Author(s)
      荒木 紀帆
    • Organizer
      第85回日本生化学会大会
    • Place of Presentation
      福岡国際会議場・マリンメッセ福岡
    • Related Report
      2012 Annual Research Report
  • [Presentation] シングルリングGroEL変異体におけるアピカルドメインの動きと働き

    • Author(s)
      安藤 華純
    • Organizer
      第85回日本生化学会大会
    • Place of Presentation
      福岡国際会議場・マリンメッセ福岡
    • Related Report
      2012 Annual Research Report
  • [Presentation] ストップトフロー解析法を用いた円順列変異型GroELCP86の機能的,速度論的解析

    • Author(s)
      水田 敏史
    • Organizer
      第85回日本生化学会大会
    • Place of Presentation
      福岡国際会議場・マリンメッセ福岡
    • Related Report
      2012 Annual Research Report
  • [Presentation] CXXCモチーフを導入したシャペロニン変異体の機能解析

    • Author(s)
      池田 雅史
    • Organizer
      第85回日本生化学会大会
    • Place of Presentation
      福岡国際会議場・マリンメッセ福岡
    • Related Report
      2012 Annual Research Report
  • [Presentation] 大腸菌GroELの機能発現における頂上ドメインの動きと役割

    • Author(s)
      溝端 知宏
    • Organizer
      大阪大学蛋白質研究所セミナー「分子シャペロンの機能発現の新展開と細胞制御」
    • Place of Presentation
      大阪大学蛋白質研究所
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] Elucidating the Molecular Mechanism of Chaperonin-facilitated Protein Folding

    • Author(s)
      Tomohiro Mizobata
    • Organizer
      2nd Seminar on Green Sustainable Chemistry in Tottori
    • Place of Presentation
      鳥取大学
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Remarks] 溝端知宏,河田康志 「ヤヌスの二つの顔:大腸菌シャペロニンGroELの頂上ドメインに関する最近の研究」生化学82,612-617(2010)

    • Related Report
      2012 Final Research Report

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Published: 2010-08-23   Modified: 2019-07-29  

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