• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

Elucidation of dynamic structural changes of protein antigens and antibodies in their interactions

Research Project

Project/Area Number 22570121
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Structural biochemistry
Research InstitutionKyoto Prefectural University

Principal Investigator

ODA Masayuki  京都府立大学, 大学院・生命環境科学研究科, 准教授 (20318231)

Co-Investigator(Renkei-kenkyūsha) UCHIYAMA Susumu  大阪大学, 大学院・工学研究科, 准教授 (90335381)
Project Period (FY) 2010 – 2012
Project Status Completed (Fiscal Year 2012)
Budget Amount *help
¥4,810,000 (Direct Cost: ¥3,700,000、Indirect Cost: ¥1,110,000)
Fiscal Year 2012: ¥910,000 (Direct Cost: ¥700,000、Indirect Cost: ¥210,000)
Fiscal Year 2011: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2010: ¥2,730,000 (Direct Cost: ¥2,100,000、Indirect Cost: ¥630,000)
Keywords分子認識 / 生体分子 / タンパク質 / 分析化学 / 免疫学 / 蛋白質
Research Abstract

Antibodies recognize various types of antigens, different shapes and sizes, and are good targets for the analysis to elucidate the structural dynamics of proteins. In this study, I changed the structures of protein antigens by chemical modification and disulfide-bonddeletion, and analyzed how the antibodies could recognize the slight and dynamic differences in antigens using the methods of binding kinetics and thermodynamics. As a result, I could detect the plural states of protein antigens and antibodies in solution, and quantitatively determine the effects of protein fluctuations.

Report

(4 results)
  • 2012 Annual Research Report   Final Research Report ( PDF )
  • 2011 Annual Research Report
  • 2010 Annual Research Report
  • Research Products

    (13 results)

All 2012 2011 2010 Other

All Journal Article (3 results) (of which Peer Reviewed: 3 results) Presentation (8 results) Remarks (2 results)

  • [Journal Article] Protein dynamics and the diversity of an antibody response.2012

    • Author(s)
      Adhikary, R., Yu, W., Oda, M., Zimmermann,J., and Romesberg, F.E.
    • Journal Title

      J. Biol. Chem.

      Volume: 287 Pages: 27139-27147

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Evaluation of the conformational equilibrium of reduced hen egg lysozyme by antibodies to the native form.2010

    • Author(s)
      Oda, M., Kitai, A., Murakami, A., Nishimura, M., Ohkuri, T., Abe, Y., Ueda, T., Nakamura, H., and Azuma, T.
    • Journal Title

      Arch. Biochem. Biophys.

      Volume: 494 Pages: 145-150

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Evaluation of the conformational equilibrium of reduced hen egg lysozyme by antibodies to the native form2010

    • Author(s)
      Masayuki Oda
    • Journal Title

      Arch.Biochem.Biophys.

      Volume: 494 Pages: 145-150

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Presentation] Dynamic structural and antigen binding analyses of antibody single-chain Fvs2012

    • Author(s)
      Yusuke Tanaka
    • Organizer
      第50回日本生物物理学会年会
    • Place of Presentation
      名古屋
    • Year and Date
      2012-09-24
    • Related Report
      2012 Final Research Report
  • [Presentation] Generation of single-chain Fv of anti-(4-hydroxy-3-nitrophenyl)acetyl antibody and its heteroclitic antigen binding2011

    • Author(s)
      Yusuke Tanaka
    • Organizer
      第49回日本生物物理学会年会
    • Place of Presentation
      姫路
    • Year and Date
      2011-09-17
    • Related Report
      2012 Final Research Report 2011 Annual Research Report
  • [Presentation] 蛋白質の天然構造と変性構造を見分ける抗体の識別能2011

    • Author(s)
      佐野 智生
    • Organizer
      第11回日本蛋白質科学会年会
    • Place of Presentation
      大阪
    • Year and Date
      2011-06-07
    • Related Report
      2012 Final Research Report 2011 Annual Research Report
  • [Presentation] Effects of substrate strain on binding thermodynamics and kinetics of catalytic antibodies2011

    • Author(s)
      Masayuki Oda
    • Organizer
      IX European symposium of The Protein Society
    • Place of Presentation
      Stockholm
    • Year and Date
      2011-05-23
    • Related Report
      2012 Final Research Report 2011 Annual Research Report
  • [Presentation] 等温滴定型カロリメトリー(I)-酵素反応の熱力学解析-2011

    • Author(s)
      織田 昌幸
    • Organizer
      第1回生体分子相互作用解析フォーラムワークショップ
    • Place of Presentation
      東京
    • Year and Date
      2011-03-10
    • Related Report
      2012 Final Research Report
  • [Presentation] 等温滴定型カロリメトリー(I)-酵素反応の熱力学解析-2011

    • Author(s)
      織田昌幸
    • Organizer
      第1回 生体分子相互作用解析フォーラムワークショップ
    • Place of Presentation
      東京
    • Year and Date
      2011-03-10
    • Related Report
      2010 Annual Research Report
  • [Presentation] Correlations between the Dynamics of Antibody-Antigen Complexes and the Antigen Binding Thermodynamics of Antibodies2010

    • Author(s)
      Masayuki Oda
    • Organizer
      21st IUPAC International Conference on Chemical Thermodynamics Conference
    • Place of Presentation
      つくば
    • Year and Date
      2010-08-03
    • Related Report
      2012 Final Research Report 2010 Annual Research Report
  • [Presentation] Dynamic structural and antigen binding analyses of antibody single-chain Fvs

    • Author(s)
      田中裕介
    • Organizer
      第50回 日本生物物理学会年会
    • Place of Presentation
      名古屋大学
    • Related Report
      2012 Annual Research Report
  • [Remarks]

    • URL

      http://www2.kpu.ac.jp/life_environ/biophys_chem/index.html

    • Related Report
      2011 Annual Research Report
  • [Remarks]

    • URL

      http://www2.kpu.ac.jp/life_environ/biophys_chem/index.html

    • Related Report
      2010 Annual Research Report

URL: 

Published: 2010-08-23   Modified: 2019-07-29  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi