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Study of protein folding under crowding and confined-space condition that mimics intracellular environments

Research Project

Project/Area Number 22570152
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Biophysics
Research InstitutionGunma University

Principal Investigator

HIRAI Mitsuhiro  群馬大学, 大学院・工学研究科, 教授 (00189820)

Project Period (FY) 2010 – 2012
Project Status Completed (Fiscal Year 2012)
Budget Amount *help
¥4,030,000 (Direct Cost: ¥3,100,000、Indirect Cost: ¥930,000)
Fiscal Year 2012: ¥780,000 (Direct Cost: ¥600,000、Indirect Cost: ¥180,000)
Fiscal Year 2011: ¥780,000 (Direct Cost: ¥600,000、Indirect Cost: ¥180,000)
Fiscal Year 2010: ¥2,470,000 (Direct Cost: ¥1,900,000、Indirect Cost: ¥570,000)
Keywords構造生物学 / 放射光 X 線広角散乱 / 階層構造解析 / クラウディング / タンパク質 / 折畳み / 生体膜 / ラフト / 構造転移 / 放射光X線 / 階層構造 / 制約空間 / 浸透圧 / 広角散乱 / 高分子 / 放射光X線広角散乱
Research Abstract

Hydration of biological macromolecules plays an important role in their structural stability and functions. Solvation of proteins is the key determinant for isothermal, concentration-dependent effects on protein equilibria, such as folding. On the other hand, the interior of a cell is very crowded with various macromolecules, and proteins must be designed to function in environments crowded by co-solutes. There is no doubt that crowding environments change protein equilibria, however, interpretations of the effect of crowding remain controversial since structural studies of protein folding and stability were conducted in dilute solutions in many cases. This project was executed to clarify how a protein folds into its native structure under a crowding condition created by high-macromolecular-weight co-solutes (polyvinylpyrrolidone (PVP)). The presence of PVP affords osmotic pressure to proteins. By using wide-angle X-ray scattering, we have studied the effect of osmotic pressure on protein unfolding and refolding of hen egg-white lysozyme (HEWL). We have found that the increase of osmotic pressure induced a change of hydration-shell density accompanying a suppression of the intramolecular fluctuation and also stabilized the intermediate unfolded state, so-called a molten globule state in the thermal unfolding process at high osmotic pressure.

Report

(4 results)
  • 2012 Annual Research Report   Final Research Report ( PDF )
  • 2011 Annual Research Report
  • 2010 Annual Research Report
  • Research Products

    (63 results)

All 2013 2012 2011 2010 Other

All Journal Article (21 results) (of which Peer Reviewed: 10 results) Presentation (40 results) (of which Invited: 3 results) Book (2 results)

  • [Journal Article] Thermal unfolding and refolding of protein under osmotic pressure clarified bywide-angle X-ray scattering2012

    • Author(s)
      M. Hirai, Y. Hagiwara, K. Takeuchi, R. Kimura, T. Onai,, R. K. Hirai, N. Ohta, M. Sugiyama
    • Journal Title

      Thermochimica Acta

      Volume: 532 Pages: 15-15

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Resonant small- and wide-angle X-ray scattering (A-SWAXS) experiments of metallo proteins in solutions2012

    • Author(s)
      M. Hirai, T. Takeuchi, R. Kimura, T. Iwasa, N. Watanabe, and N. Ohta
    • Journal Title

      SPring-8 User Experiment Report

      Volume: 2012A

    • Related Report
      2012 Final Research Report
  • [Journal Article] 生体物質の小角散乱2012

    • Author(s)
      平井光博
    • Journal Title

      日本中性子科学会誌

      Volume: 22 Pages: 71-71

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Amyloid transition of proteins under crowding environment observed by WAXS2012

    • Author(s)
      M. Hirai, T. Takeuchi, R. Kimura
    • Journal Title

      SPring-8 User Experiment Repor, 2012

      Volume: 2012B

    • Related Report
      2012 Final Research Report
  • [Journal Article] Thermal unfolding and refolding of protein under osmotic pressure clarified by wide-angle X-ray scattering2012

    • Author(s)
      M.Hirai, et al.
    • Journal Title

      Thermochimica Acta

      Volume: 532 Pages: 15-21

    • DOI

      10.1016/j.tca.2011.11.019

    • Related Report
      2012 Annual Research Report 2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 生体物質の小角散乱2012

    • Author(s)
      平井光博
    • Journal Title

      波紋

      Volume: 22 Pages: 71-71

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] WatanabeStudy of Structural Stability of Protein Entrapped in Lipid Liposome2011

    • Author(s)
      M. Hirai, R. Kimura, T. Takeuchi, T. Iwasa, and N.
    • Journal Title

      SPring-8 User Experiment Report

      Volume: 2011B

    • Related Report
      2012 Final Research Report
  • [Journal Article] Effect of co-solute on protein structure at equilibrium2011

    • Author(s)
      M. Hirai, T. Takeuchi, R. Timura, M. Sugiyama, T. Iwasa, and N. Shimizu
    • Journal Title

      SPring-8 User Experiment Report

      Volume: 2011A

    • Related Report
      2012 Final Research Report
  • [Journal Article] Characterization of structure of liposome occluding protein2011

    • Author(s)
      M. Hirai, R. Kimura, T. Takeuchi, M. Sugiyama, T. Iwasa, and N. Shimizu
    • Journal Title

      SPring-8 User Experiment Report

      Volume: 2011A

    • Related Report
      2012 Final Research Report
  • [Journal Article] Kinetic asymmetry of subunit exchange of homooligomeric protein as revealed by deuteration-assisted small-angle neutron scattering.2011

    • Author(s)
      M.Sugiyama, E.Kurimoto, H.Yagi, K.Mori, T.Fukunaga, M.Hirai, G.Zaccai, and K.Kato
    • Journal Title

      Biophys. J.

      Volume: 101 Issue: 8 Pages: 2037-2042

    • DOI

      10.1016/j.bpj.2011.09.004

    • NAID

      120003551148

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Study of Structural Stability of Protein Entrapped in Lipid Liposome2011

    • Author(s)
      M.Hirai, et al.
    • Journal Title

      SPring-8 User Experiment Report

      Volume: 2011B

    • Related Report
      2011 Annual Research Report
  • [Journal Article] SEffect of co-solute on protein structure at equilibrium2011

    • Author(s)
      M.Hirai, et al.
    • Journal Title

      SPring-8 User Experiment Report

      Volume: 2011A

    • Related Report
      2011 Annual Research Report
  • [Journal Article] Kinetic Asymmetry of Subunit Exchange of Homooligomeric Protein as Revealed by Deuteration-Assisted Small-Angle Neutron Scattering2010

    • Author(s)
      M. Sugiyama, E. Kurimoto, H. Yagi, K. Mori, T. Fukunaga, M. Hirai, G. Zaccai, and K. Kato
    • Journal Title

      Biophys.J

      Volume: 101 Pages: 2037-2037

    • NAID

      120003551148

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Morphology transition of raft-model membrane induced by osmotic pressure: Formation of double-layered vesicle similar to an endo- and/or exocytosis2010

    • Author(s)
      T. Onai, and M. Hirai.
    • Journal Title

      J. Phys. : Conference Series

      Volume: 83

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Recent developement and prospects of nuetron scattering study of biomaterials mainly on biomembrane2010

    • Author(s)
      M. Hirai
    • Journal Title

      J. Vac. Soc. Jpn

      Volume: 53 Pages: 739-739

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Effect of osmotic stress on protein folding2010

    • Author(s)
      M. Hirai, Y. Hagiwara, T. Onai
    • Journal Title

      Photon Factory Activity Report

      Volume: 27(A) Pages: 213-213

    • Related Report
      2012 Final Research Report
  • [Journal Article] Under Osmotic Pressure2010

    • Author(s)
      M. Hirai. Y. Hagiwara, T. Onai, and N. OhtaThermal Unfolding and Refolding of Protein
    • Journal Title

      SPring-8 User Experiment Report

      Volume: 2010A

    • Related Report
      2012 Final Research Report
  • [Journal Article] Morphology transition of raft-model membrane induced by osmotic pressure : Formation of double-layered vesicle similar to an endo- and/or exocytosis2010

    • Author(s)
      T.Onai, M.Hirai.
    • Journal Title

      J.Phys. : Conference Series

      Volume: 83 Pages: 12003-12003

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Recent developement. and prospects of nuetron scattering study of biomaterials mainly on biomembrane2010

    • Author(s)
      M.Hirai
    • Journal Title

      J.Vac.Soc.Jpn.

      Volume: 53 Pages: 739-746

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Effect of osmotic stress on protein folding2010

    • Author(s)
      M.Hirai, Y.Hagiwara, T.Onai
    • Journal Title

      Photon Factory Activity Report

      Volume: 127 Pages: 213-213

    • Related Report
      2010 Annual Research Report
  • [Journal Article] Thermal Unfolding and Refolding of Protein Under Osmotic Pressure2010

    • Author(s)
      M.Hirai. Y.Hagiwara, T.Onai, N.Ohta
    • Journal Title

      SPring-8 User Experiment Report

    • Related Report
      2010 Annual Research Report
  • [Presentation] タンパク質内包リポソームの浸透圧下における構造2013

    • Author(s)
      木村亮太,平井光博
    • Organizer
      第30回PF シンポジウム
    • Place of Presentation
      つくば市
    • Year and Date
      2013-03-15
    • Related Report
      2012 Final Research Report
  • [Presentation] Crowding 環境中のタンパク質構造の研究2013

    • Author(s)
      竹内一樹^1,平井光博
    • Organizer
      第30回PFシンポジウム
    • Place of Presentation
      つくば市
    • Year and Date
      2013-03-15
    • Related Report
      2012 Final Research Report
  • [Presentation] crowding 環境下におけるタンパク質および生体膜の構造と機能2013

    • Author(s)
      平井光博
    • Organizer
      第4回中性子小角散乱解析法研究会
    • Place of Presentation
      都内
    • Year and Date
      2013-03-13
    • Related Report
      2012 Final Research Report
  • [Presentation] SWAXS study of thermal structural stability of liposomes entrapping proteins2012

    • Author(s)
      R. Kimura, M. Hirai
    • Organizer
      日本生物物理学会第50回年会
    • Place of Presentation
      名古屋大学
    • Year and Date
      2012-09-23
    • Related Report
      2012 Final Research Report
  • [Presentation] Effect of osmotic pressure on protein unfolding and cross-beta transition2012

    • Author(s)
      K. Takeuchi, M. Hirai
    • Organizer
      日本生物物理学会第50回年会
    • Place of Presentation
      名古屋大学
    • Year and Date
      2012-09-23
    • Related Report
      2012 Final Research Report
  • [Presentation] Development of resonant X-ray scattering method of metalloproteins in solutions2012

    • Author(s)
      M. Hirai, K. Takeuchi, R. Kimura, N.Ohota
    • Organizer
      日本生物物理学会第50回年会
    • Place of Presentation
      名古屋大学
    • Year and Date
      2012-09-23
    • Related Report
      2012 Final Research Report
  • [Presentation] SAXS measurements of purified octopus rhodopsin2012

    • Author(s)
      S. Watanabe, M. Hirai, T. Iwasa
    • Organizer
      日本生物物理学会第50回年会
    • Place of Presentation
      名古屋大学
    • Year and Date
      2012-09-23
    • Related Report
      2012 Final Research Report
  • [Presentation] ラフトモデル膜とアミロイド蛋白質との相互作用2012

    • Author(s)
      平井光博
    • Organizer
      J-PARC プロジェクト課題「生体高分子の構造-ダイナミクス相関の解析」キックオフ会議
    • Place of Presentation
      東海村,J-PARC
    • Year and Date
      2012-07-19
    • Related Report
      2012 Final Research Report
  • [Presentation] タンパク質内包リポソームの構造と熱安定性2012

    • Author(s)
      平井光博
    • Organizer
      第29回PF シンポジウム
    • Place of Presentation
      つくば市
    • Year and Date
      2012-03-15
    • Related Report
      2012 Final Research Report
  • [Presentation] タンパク質内包リポソームの構造と熱安定性2012

    • Author(s)
      平井光博
    • Organizer
      第29回PFシンポジウム
    • Place of Presentation
      つくば市
    • Year and Date
      2012-03-15
    • Related Report
      2011 Annual Research Report
  • [Presentation] Functional structure of raft-model membrane clarified by complementary use of neutron and X-ray2012

    • Author(s)
      M. Hirai
    • Organizer
      Symposium on Future and Challenges of Neutron Scattering in Biology: Structural Dynamics and Dynamical
    • Place of Presentation
      Structures, Grenoble, France
    • Related Report
      2012 Final Research Report
  • [Presentation] 散乱法による脂質・蛋白質系の階層構造と機能解析2011

    • Author(s)
      平井光博
    • Organizer
      日本物理学会2011 秋季大会
    • Place of Presentation
      富山大学
    • Year and Date
      2011-09-22
    • Related Report
      2012 Final Research Report
  • [Presentation] 散乱法による脂質・蛋白質系の階層構造と機能解析2011

    • Author(s)
      平井光博
    • Organizer
      日本物理学会2011秋季大会
    • Place of Presentation
      富山大学
    • Year and Date
      2011-09-22
    • Related Report
      2011 Annual Research Report
  • [Presentation] Structure and thermal stability of liposomes entrapping proteins2011

    • Author(s)
      M. Hirai
    • Organizer
      日本生物物理学会第49回年会
    • Place of Presentation
      兵庫県立大学
    • Year and Date
      2011-09-17
    • Related Report
      2012 Final Research Report
  • [Presentation] structure and thermal stability of liposomes entrapping proteins2011

    • Author(s)
      M.Hirai
    • Organizer
      日本生物物理学会第49回年会
    • Place of Presentation
      兵庫県立大学
    • Year and Date
      2011-09-17
    • Related Report
      2011 Annual Research Report
  • [Presentation] 軟X線を利用した共鳴(異常)X線小角散乱の可能性2011

    • Author(s)
      平井光博
    • Organizer
      合同PF研究会:「PFにおけるマイクロビームを利用したXAFS,XRF,SAXS実験の展望」
    • Place of Presentation
      高エネルギー加速器研究機構
    • Year and Date
      2011-09-07
    • Related Report
      2012 Final Research Report
  • [Presentation] 脂質混合リポソームの浸透圧に誘導される変形とその可逆性2011

    • Author(s)
      小内輝明,平井光博
    • Organizer
      合同PF 研究会:「PFにおけるマイクロビームを利用した XAFS, XRF, SAXS 実験の展望」
    • Place of Presentation
      高エネルギー加速器研究機構
    • Year and Date
      2011-09-07
    • Related Report
      2012 Final Research Report
  • [Presentation] 軟X 線領域におけるGISAXS 法2011

    • Author(s)
      奥田浩司,平井光博, 他
    • Organizer
      合同PF 研究会:「PFにおけるマイクロビームを利用した XAFS, XRF, SAXS 実験の展望」
    • Place of Presentation
      高エネルギー加速器研究機構
    • Year and Date
      2011-09-07
    • Related Report
      2012 Final Research Report
  • [Presentation] 軟X線を利用した共鳴(異常)X線小角散乱の可能性2011

    • Author(s)
      平井光博
    • Organizer
      合同PF研究会:「PFにおけるマイクロビームを利用したXAFS, XRF, SAXS実験の展望」
    • Place of Presentation
      高エネルギー加速器研究機構
    • Year and Date
      2011-09-07
    • Related Report
      2011 Annual Research Report
  • [Presentation] 脂質混合リポソームの浸透圧に誘導される変形とその可逆性2011

    • Author(s)
      小内輝明, 平井光博, 他
    • Organizer
      合同PF研究会:「PFにおけるマイクロビームを利用したXAFS, XRF, SAXS実験の展望」
    • Place of Presentation
      高エネルギー加速器研究機構
    • Year and Date
      2011-09-07
    • Related Report
      2011 Annual Research Report
  • [Presentation] 軟X線領域におけるGISAXS法2011

    • Author(s)
      奥田浩司, 平井光博, 他
    • Organizer
      合同PF研究会:「PFにおけるマイクロビームを利用したXAFS, XRF, SAXS実験の展望」
    • Place of Presentation
      高エネルギー加速器研究機構
    • Year and Date
      2011-09-06
    • Related Report
      2011 Annual Research Report
  • [Presentation] 脂質・タンパク質系の放射光X線・中性子散乱利用の有効性と展望2010

    • Author(s)
      平井光博
    • Organizer
      第10回ヘルスケア研究会
    • Place of Presentation
      都内
    • Year and Date
      2010-12-22
    • Related Report
      2012 Final Research Report
  • [Presentation] 脂質・タンパク質系の放射光X線・中性子散乱利用の有効性と展望2010

    • Author(s)
      平井光博
    • Organizer
      第10回ヘルスケア研究会
    • Place of Presentation
      都内(総評会館)
    • Year and Date
      2010-12-22
    • Related Report
      2010 Annual Research Report
  • [Presentation] パルス中性子散乱を用いたタンパク質・生体 膜の階層構造研究の展望2010

    • Author(s)
      平井光博
    • Organizer
      第48回日本生物物理学会年会
    • Place of Presentation
      東北大学
    • Year and Date
      2010-09-21
    • Related Report
      2012 Final Research Report
  • [Presentation] パルス中性子散乱を用いたタンパク質・生体膜の階層構造研究の展望2010

    • Author(s)
      平井光博
    • Organizer
      第48回日本生物物理学会年会
    • Place of Presentation
      東北大学
    • Year and Date
      2010-09-21
    • Related Report
      2010 Annual Research Report
  • [Presentation] ラフトモデル膜の機能構造2010

    • Author(s)
      平井光博
    • Organizer
      第59回高分子討諭会
    • Place of Presentation
      北海道大学
    • Year and Date
      2010-09-16
    • Related Report
      2010 Annual Research Report
  • [Presentation] ラフトモデル膜の機能構造2010

    • Author(s)
      平井光博
    • Organizer
      第59回高分子討論会
    • Place of Presentation
      北海道大学
    • Year and Date
      2010-09-15
    • Related Report
      2012 Final Research Report
  • [Presentation] Morphology transition of raft-model membrane under osmotic pressure2010

    • Author(s)
      M.Hirai
    • Organizer
      JST ERATO and CREST Joint Symposium, Future Trend in Softmaterial Research with Advanced Light Source
    • Place of Presentation
      兵庫,Spring
    • Year and Date
      2010-09-02
    • Related Report
      2010 Annual Research Report
  • [Presentation] 量子ビーム科学の生命科学への応用2010

    • Author(s)
      平井光博
    • Organizer
      平成22年度群馬大学科学技術振興会セミナー
    • Place of Presentation
      桐生市
    • Year and Date
      2010-08-27
    • Related Report
      2010 Annual Research Report
  • [Presentation] Ohta Thermal Folding and unfolding of protein under osmotic pressure2010

    • Author(s)
      M. Hirai, Y. Hagiwara, T. Onai, R.K-Hirai, and N.
    • Organizer
      21st IUPAC International Conference on Chemical Thermodynamics
    • Place of Presentation
      つくば市
    • Year and Date
      2010-07-31
    • Related Report
      2012 Final Research Report
  • [Presentation] Thermal Foiding and unfolding of protein under osmotic pressure.2010

    • Author(s)
      M.Hirai, Y.Hagiwara, R.K-Hirai, N.Ohta.
    • Organizer
      21st IUPAC International Conference on Chemical Thermodynamics
    • Place of Presentation
      つくば市
    • Year and Date
      2010-07-31
    • Related Report
      2010 Annual Research Report
  • [Presentation] タンパク質内包リポソームの浸透圧下における構造

    • Author(s)
      木村亮太,平井光博
    • Organizer
      第30回PFシンポジウム
    • Place of Presentation
      つくば市
    • Related Report
      2012 Annual Research Report
  • [Presentation] Crowding環境中のタンパク質構造の研究

    • Author(s)
      竹内一樹,平井光博
    • Organizer
      第30回PFシンポジウム
    • Place of Presentation
      つくば市
    • Related Report
      2012 Annual Research Report
  • [Presentation] crowding環境下におけるタンパク質および生体膜の構造と機能

    • Author(s)
      平井光博
    • Organizer
      第4回中性子小角散乱解析法研究会
    • Place of Presentation
      都内
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] Functional structure of raft-model membrane clarified by complementary use of neutron and X-ray

    • Author(s)
      M. Hirai
    • Organizer
      Symposium on Future and Challenges of Neutron Scattering in Biology: Structural Dynamics and Dynamical Structures
    • Place of Presentation
      Grenoble, France
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] ラフトモデル膜とアミロイド蛋白質との相互作用

    • Author(s)
      平井光博
    • Organizer
      J-PARCプロジェクト課題「生体高分子の構造-ダイナミクス相関の解析」キックオフ会議
    • Place of Presentation
      東海村
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] SWAXS study of thermal structural stability of liposomes entrapping proteins

    • Author(s)
      R. Kimura, M. Hirai
    • Organizer
      日本生物物理学会第50回年会
    • Place of Presentation
      名古屋大学
    • Related Report
      2012 Annual Research Report
  • [Presentation] Effect of osmotic pressure on protein unfolding and cross-beta transition

    • Author(s)
      K. Takeuchi, M. Hirai
    • Organizer
      日本生物物理学会第50回年会
    • Place of Presentation
      名古屋大学
    • Related Report
      2012 Annual Research Report
  • [Presentation] Development of resonant X-ray scattering method of metalloproteins in solutions

    • Author(s)
      M. Hirai, K. Takeuchi, R. Kimura, N. Ohota
    • Organizer
      日本生物物理学会第50回年会
    • Place of Presentation
      名古屋大学
    • Related Report
      2012 Annual Research Report
  • [Presentation] SAXS measurements of purified octopus rhodopsin

    • Author(s)
      S. Watanabe, M. Hirai, T. Iwasa
    • Organizer
      日本生物物理学会第50回年会
    • Place of Presentation
      名古屋大学
    • Related Report
      2012 Annual Research Report
  • [Book] Contrast variation in 'Neutrons in SoftMatters'2011

    • Author(s)
      M. Hirai
    • Publisher
      John Wiley & Sons
    • Related Report
      2012 Final Research Report
  • [Book] Contrast variation in 'Neutrons in Soft Matters'2011

    • Author(s)
      M.Hirai
    • Total Pages
      31
    • Publisher
      John Wiley & Sons
    • Related Report
      2011 Annual Research Report

URL: 

Published: 2010-11-30   Modified: 2019-07-29  

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