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Thermodynamics of protein denaturation at high temperatures more than 100℃

Research Project

Project/Area Number 22570166
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Biophysics
Research InstitutionThe Institute of Physical and Chemical Research

Principal Investigator

YUTANI Katsuhide  独立行政法人理化学研究所, タンパク質結晶構造解析研究グループ, 上級研究員 (90089889)

Co-Investigator(Renkei-kenkyūsha) MATSUURA Yoshinori  独立行政法人理化学研究所, タンパク質結晶構造解析研究グループ, リサーチアソシエイト (50513462)
Project Period (FY) 2010 – 2012
Project Status Completed (Fiscal Year 2012)
Budget Amount *help
¥4,550,000 (Direct Cost: ¥3,500,000、Indirect Cost: ¥1,050,000)
Fiscal Year 2012: ¥1,040,000 (Direct Cost: ¥800,000、Indirect Cost: ¥240,000)
Fiscal Year 2011: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2010: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Keywords蛋白質変性の熱力学 / 蛋白質の安定性 / 蛋白質熱変性の可逆性 / 示差走査熱量計 / 超好熱菌由来蛋白質 / 疎水性相互作用 / イオン相互作用 / CutA1 / DSC / 熱変性の可逆性 / 蛋白質の立体構造 / 蛋白質の熱変性 / 蛋白質の構造 / CutAl
Research Abstract

The heat-denaturation of proteins is usually irreversible at higher temperatures than around 70℃, because of aggregation after heat denaturation. Therefore, their thermodynamic characteristics are less well understood at the temperatures more than 70℃. In this study, we found that SH-free CutA1 mutant from E. coli and its hydrophobic mutants show very good reversibility of heat denaturation at pH 9. The denaturation temperatures of the hydrophobic mutants were 90-115℃. Then, we succeeded to experimentally obtain the thermodynamic parameters of protein denaturation over 100℃ by DSC.

Report

(4 results)
  • 2012 Annual Research Report   Final Research Report ( PDF )
  • 2011 Annual Research Report
  • 2010 Annual Research Report
  • Research Products

    (27 results)

All 2013 2012 2011 2010

All Journal Article (20 results) (of which Peer Reviewed: 20 results) Presentation (6 results) Book (1 results)

  • [Journal Article] Effect of heavy atoms on the thermal stability of α-amylase from Aspergillus oryzae2013

    • Author(s)
      Michihiro Sugahara, et al., Katsuhide Yutani.
    • Journal Title

      PLOS One

      Volume: 8

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Structure and function of a TetR family transcriptional regulator, SbtR, from Thermus thermophilus HB82013

    • Author(s)
      Yoshihiro Agari, et al., Katsuhide Yutani
    • Journal Title

      Proteins

      Volume: (in press)

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Effect of heavy atoms on the thermal stability of α-amylase from Aspergillus oryzae2013

    • Author(s)
      Sugahara M
    • Journal Title

      PLoS One

      Volume: 8 Issue: 2 Pages: e57432-e57432

    • DOI

      10.1371/journal.pone.0057432

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structure and function of a TetR family transcriptional regulator, SbtR, from Thermus thermophilus HB82013

    • Author(s)
      Agari Y, Sakamoto K, Yutani K, Kuramitsu S, Shinkai A.
    • Journal Title

      Proteins

      Volume: (in press) Issue: 7 Pages: 1166-1178

    • DOI

      10.1002/prot.24266

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Role of charged residues in stabilization of Pyrococcus horikoshii CutA1, which has a denaturation temperature of nearly 150℃2012

    • Author(s)
      Yoshinori Matsuura, et al., Katsuhide Yutani
    • Journal Title

      FEBS Journal

      Volume: 279 Pages: 78-90

    • Related Report
      2012 Final Research Report 2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structural Characterization of a Trapped Folding Intermediate of Pyrrolidone Carboxyl Peptidase from a Hyperthermophile2012

    • Author(s)
      Mineyuki Mizuguchi, et al., Katsuhide Yutani
    • Journal Title

      Biochemistry

      Volume: 51 Pages: 6089-6096

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Structural characterization of a trapped folding intermediate of pyrrolidone carboxyl peptidase from a hyperthermophile2012

    • Author(s)
      Mizuguchi, M., Takeuchi, M., Ohki, S., Nabeshima, Y., Kouno, T., Aizawa, T., Demura, M., Kawano, K., Yutani, K.
    • Journal Title

      Biochemistry

      Volume: 51 Issue: 31 Pages: 6089-6096

    • DOI

      10.1021/bi300608e

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A Demetallation Method for IMP-1 Metallo-β-Lactamase with Restored Enzymatic Activity Upon Addition of Metal Ion(s)2011

    • Author(s)
      Yoshihiro Yamaguchi, et al., Katsuhide Yutani
    • Journal Title

      ChemBioChem

      Volume: 12 Pages: 1979-1983

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Crystal structure of indole-3-glycerol phosphate synthase from Thermus thermophilus HB8: implications for thermal stability2011

    • Author(s)
      Bagautdin Bagautdinov and Katsuhide Yutani
    • Journal Title

      Acta Crystallographica Section D

      Volume: D67 Pages: 1054-1064

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] A demetallation method for IMP-1 metallo-ss-lactamase with restored enzymatic activity upon addition of metal ion(s)2011

    • Author(s)
      Yamaguchi Y, Ding S, Murakami E, Imamura K, Fuchigami S, Hashiguchi R, Yutani K, Mori H, Suzuki S, Arakawa Y, Kurosaki H
    • Journal Title

      ChemBioChem

      Volume: 12 Issue: 13 Pages: 1979-1983

    • DOI

      10.1002/cbic.201100342

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Crystal structure of indole-3-glycerol phosphate synthase from Thermus thermophilus HB8 : implications for thermal stability2011

    • Author(s)
      B.Bagautdinov, K.Yutani
    • Journal Title

      Acta Crystallographica Section D

      Volume: D67 Issue: 12 Pages: 1054-1064

    • DOI

      10.1107/s0907444911045264

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The catalytic efficiency (kcat/Km) of the class A β-lactamase Toho-1 correlates with the thermal stability of its catalytic intermediate analog2010

    • Author(s)
      Yasushi Nitanai, et al., Katsuhide Yutani
    • Journal Title

      Biochem. Biophys. Acta

      Volume: 1804 Pages: 684-691

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Large conformational changes in Escherichia coli tryptophan synthaseβ_2 Subunit upon binding of PLP2010

    • Author(s)
      Kazuya Nishio, et al., Katsuhide Yutani
    • Journal Title

      FEBS J.

      Volume: 227 Pages: 2157-2170

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Crystal structure of TTHA0061, an uncharacterized protein from Thermus thermophilus HB8, reveals a novel fold.2010

    • Author(s)
      Tomoyuki Tanaka, et al., Katsuhide Yutani
    • Journal Title

      Biochem. Biophys. Res. Commun.

      Volume: 400 Pages: 258-264

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Construction of robust bio-nanotubes using the controlled self-assembly of component proteins of bacteriophage T42010

    • Author(s)
      Norihiko Yokoi, et al., Katsuhide Yutani
    • Journal Title

      Small

      Volume: 6 Pages: 1873-1879

    • Related Report
      2012 Final Research Report 2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Remarkable improvement in the heat stability of CutA1 from Escherichia coli by rational protein design2010

    • Author(s)
      Yoshinori Matsuura, et al., Katsuhide Yutani
    • Journal Title

      J. Biochem.

      Volume: 148 Pages: 449-458

    • NAID

      10027878859

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] The catalytic efficiency (k_<cat>/K_m) of the class A β-lactamase Toho-1 correlates with the thermal stability of its catalytic intermediate analog2010

    • Author(s)
      Yasushi Nitanai
    • Journal Title

      Biochem.Biophys.Acta

      Volume: 1804 Pages: 684-691

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Large conformational changes in Escherichia coli tryptophan synthase β_2 Subunit upon binding of PLP2010

    • Author(s)
      Kazuya Nishio
    • Journal Title

      FEBS J

      Volume: 227 Pages: 2157-2170

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Crystal structure of TTHA0061, an uncharacterized protein from Thermus thermophilus HB8, reveals a novel fold.2010

    • Author(s)
      Tanaka T
    • Journal Title

      Biochem.Biophys.Res.Commun.

      Volume: 400 Pages: 258-264

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Remarkable improvement in the heat stability of CutA1 from Escherichia coli by rational protein design2010

    • Author(s)
      Yoshinori Matsuura
    • Journal Title

      J.Biochem

      Volume: 148 Pages: 449-458

    • NAID

      10027878859

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Presentation] Heat-stabilization strategy due to unusual amount of charged residues in CutA1 protein from hyperthermophile, which has a denaturation temperature of nearly 150℃2012

    • Author(s)
      Yoshinori Matsuura, et al., Katsuhide Yutani
    • Organizer
      9th International Conference on Protein Stabilization
    • Place of Presentation
      Lisbon, Portugal
    • Year and Date
      2012-05-03
    • Related Report
      2012 Final Research Report
  • [Presentation] Heat-stabilization strategy due to unusual amount of charged residues in CutA1 protein from hyperthermophile, which has a denaturation temperature of nearly 150 oC2012

    • Author(s)
      Yutani, K
    • Organizer
      9th International Conference on Protein Stabilization
    • Place of Presentation
      Lisbon, Portugal
    • Related Report
      2012 Annual Research Report
  • [Presentation] 理論的に推定された静電相互作用の蛋白質熱安定化への寄与の検証;超好熱菌由来PACutA1の場合2011

    • Author(s)
      松浦祥悟, 他
    • Organizer
      第11回日本蛋白質科学会年会
    • Place of Presentation
      吹田市、ホテル阪急エキスポパーク
    • Year and Date
      2011-06-07
    • Related Report
      2011 Annual Research Report
  • [Presentation] Does hydrophobic interaction due to hydration contribute to protein stability even over 100℃.2011

    • Author(s)
      Yoshinori Matsuura, et al., Katsuhide Yutani
    • Organizer
      7th Asian Biophysics Association Symposium
    • Place of Presentation
      New Delhi, India
    • Year and Date
      2011-02-01
    • Related Report
      2012 Final Research Report
  • [Presentation] Does hydrophobic interaction due to hydration contribute to protein stability even over 100℃2011

    • Author(s)
      Yoshinori Matsuura
    • Organizer
      7th Asian Biophysics Association Symposium
    • Place of Presentation
      New Delhi
    • Year and Date
      2011-02-01
    • Related Report
      2010 Annual Research Report
  • [Presentation] Calorimetry of heat-reversible CutA1 proteins with a denaturation temperature higher than 100℃2010

    • Author(s)
      Yoshinori Matsuura, et al., Katsuhide Yutani
    • Organizer
      21st IUPAC International Conference on Chemical Thermodynamics
    • Place of Presentation
      Tsukuba
    • Year and Date
      2010-08-02
    • Related Report
      2012 Final Research Report
  • [Book] 「熱量測定・熱分析ハンドブック第2版」 超好熱菌由来蛋白質の熱安定性2010

    • Author(s)
      油谷克英
    • Total Pages
      357
    • Publisher
      丸善KK
    • Related Report
      2012 Final Research Report

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Published: 2010-08-23   Modified: 2019-07-29  

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