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Clarification of hemoglobin evolution process by reverse molecular evolution

Research Project

Project/Area Number 22570217
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Evolutionary biology
Research InstitutionHosei University

Principal Investigator

IMAI Kiyohiro  法政大学, 生命機能学部, 教授 (50028528)

Co-Investigator(Kenkyū-buntansha) MATSUO Takatoshi  法政大学, マイクロ・ナノテクノロジー, 研究員 (00500737)
NAKAGAWA Taro  長浜バイオ大学, バイオサイエンス学部, 助手 (30401889)
Co-Investigator(Renkei-kenkyūsha) NAGAI Masako   (60019578)
Project Period (FY) 2010 – 2012
Project Status Completed (Fiscal Year 2012)
Budget Amount *help
¥4,420,000 (Direct Cost: ¥3,400,000、Indirect Cost: ¥1,020,000)
Fiscal Year 2012: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2011: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2010: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Keywordsヘモグロビン / 分子進化 / 祖先型蛋白質 / 硬骨魚類 / 円口類 / 魚類
Research Abstract

This study intends to learn the principle of protein molecule design which was adopted by nature to acquire high-order functions for ancestral hemoglobins of vertebrates in the course of molecular evolution. We designed and synthesized the hemoglobin genes for ancestors of teleost and cyclostomata and expressed them in E. coli, obtaining the ancestral hemoglobins. The teleost ancestral hemoglobins showed a strong Bohr effect which assumes a Root effect and week cooperativity, indicating that they have characteristics of teleost. The cyclostomata ancestral hemoglobins showed a small Bohr effect and week cooperativity in contrast with natural lamprey hemoglobin without those effects.

Report

(4 results)
  • 2012 Annual Research Report   Final Research Report ( PDF )
  • 2011 Annual Research Report
  • 2010 Annual Research Report
  • Research Products

    (50 results)

All 2012 2011 2010

All Journal Article (16 results) (of which Peer Reviewed: 16 results) Presentation (34 results)

  • [Journal Article] Near-UVcircular dichroism and UV resonance Ramanspectra of individual tryptophan residues inhuman hemoglobin and their changes uponthe quaternary st2012

    • Author(s)
      Nagai, M, Nagatomo, S, Nagai, Y, Ohkubo,K, Imai, K, and Kitagawa, T.
    • Journal Title

      Biochemistry

      Volume: 51 Pages: 5932-5941

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Relationship between oxygen affinity and autoxodation of myoglobin.2012

    • Author(s)
      Shibata, T, Matsumoto, D;, Nishimura, R, Tai, H, Matsuoka, A, Nagao, S, Matsuo, T, Hirata, S, Imai, K, Neya, S, Suzuki, A. and Yamamoto, T.
    • Journal Title

      Inorg. Chem

      Volume: 51 Pages: 11955-11960

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Near-UV circular dichroism and UV resonance Raman spectra of individual tryptophan residues in human hemoglobin and their changes upon the quaternary structure transition2012

    • Author(s)
      Nagai, M.
    • Journal Title

      Biochemistry

      Volume: 51 Pages: 5932-5941

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Relationship between oxygen affinity and autoxodation of myoglobin2012

    • Author(s)
      Shibata, T.
    • Journal Title

      Inorg. Chem.

      Volume: 51 Pages: 11955-11960

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Differences between protein dynamics of hemoglobin upon dissociation of oxygen and carbon monoxide2012

    • Author(s)
      Yuka Murakami
    • Journal Title

      J.Amer.Chem.Soc.

      Volume: 134 Pages: 1434-1437

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Ultrafast protein dynamics of hemoglobin as studied by picosecond time-resoolved resonance Raman spectroscopy2012

    • Author(s)
      Yasuhisa Mizutani
    • Journal Title

      Chem.Phys.

      Volume: 396 Pages: 45-52

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Allosteric models of hemoglobin, still evolving, In Hemoglobin: Recent Developments and Topics2011

    • Author(s)
      H. Fujimoto and K. Imai
    • Journal Title

      Research Signpost, Kerala, India (M. Nagai, ed.)

      Pages: 161-177

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Determination of oxygen binding properties of the individual subunits of intact human adult hemoglobin2011

    • Author(s)
      A. Sato, H. Tai, S. Nagatomo, K. Imai and Y.Yamamoto
    • Journal Title

      Bull. Chem. Soc. Jpn

      Volume: 84 Pages: 1107-1111

    • NAID

      10030215259

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Allosteric models of hemoglobin, still evolving2011

    • Author(s)
      Hisataka Fujimoto
    • Journal Title

      In Hemoglobin : Recent Developments and Topics

      Pages: 161-177

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Determination of oxygen binding properties of the individual subunits of intact human adult hemoglobin2011

    • Author(s)
      Atsushi Sato
    • Journal Title

      Bull.Chem.Soc.Jpn.

      Volume: 84 Pages: 1107-1111

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Molecular insight into intrinsic heme distortion in ligand binding in hemoprotein2010

    • Author(s)
      S. Neya, M. Suzuki, T. Hoshino, H. Ode, K. Imai, T. Komatsu, A. Ikezaki, M. Nakamura,Y. Furutani and H. Kandon
    • Journal Title

      Biochemistry.

      Volume: Vol. 49 Pages: 5642-5650

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Effect of heme modification on oxygen affinity of myoglobin and equilibrium of the acid-alkaline transition in metmyoglobin2010

    • Author(s)
      T. Shibata, S. Nagao, M. Fukaya, H. Tai, S.Nagatomo, K. Morihashi, T. Matsuo, S. Hirota, A. Suzuki, K. Imai and Y. Yamamoto
    • Journal Title

      J. Am. Chem. Soc.

      Volume: Vol. 132 Pages: 6091-6098

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Differences in coordination states of substituted tyrosine residues and quaternary structures among hemoglobin M probed by resonance Raman spectroscopy2010

    • Author(s)
      Y. Aki, M. Nagai, Y. Nagai, K. Imai, M. Aki, A. Sato, M. Kubo, S. Nagatomo and T. Kitagawa
    • Journal Title

      J. Biol. Inorg. Chem.

      Volume: Vol. 15 Pages: 147-158

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Differences in coordination states of substituted tyrosine residues and quaternary structures among hemoglobin M probed by resonance Raman spectroscopy2010

    • Author(s)
      Yayoi Aki
    • Journal Title

      J.Biol.Inorg.Chem.

      Volume: 15 Pages: 147-158

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Molecular insight into intrinsic heme distortion in ligand binding in hemoprotein2010

    • Author(s)
      Saburo Neya
    • Journal Title

      Biochemistry

      Volume: 49 Pages: 5642-5650

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Effect of heme modification on oxygen affinity of myoglobin and Equilibrium of the acid-alkaline transition in metmyoglobin2010

    • Author(s)
      Tomokazu Shibata
    • Journal Title

      J.Amer.Chem.Soc.

      Volume: 132 Pages: 6091-6098

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Presentation] 硬骨魚類の祖先型ヘモグロビン Node296α・Node203β 遺伝子設計・合成お よび大腸菌内発現2012

    • Author(s)
      杉山 将,松尾高稔,関 一葉,中川太郎,今井 清博
    • Organizer
      マイクロ・ナノテクノロジー研究センター開設 10 周年記 念シンポジウム
    • Place of Presentation
      法政大学,東京都
    • Year and Date
      2012-10-13
    • Related Report
      2012 Final Research Report
  • [Presentation] ヤツメウナギ由来の祖先型ヘモグロビン遺伝子(node25)の発現系構築2012

    • Author(s)
      幕晋一,松尾高稔,中川太郎,今井清博
    • Organizer
      マイクロ・ナノテクノロジー研究センター開設10周年記念シンポジウム
    • Place of Presentation
      法政大学,東京都
    • Year and Date
      2012-10-13
    • Related Report
      2012 Final Research Report
  • [Presentation] Expression of ancestral Cyclstomes hemoglobin Node23 gene in Escherichia coli2012

    • Author(s)
      松尾高稔,喜多かつら,尾澤雄太,中川太郎,今井清博
    • Organizer
      マイクロ・ナノテクノ ロジー研究センター開設10周年記念シンポジウム
    • Place of Presentation
      法政大学東京都
    • Year and Date
      2012-10-13
    • Related Report
      2012 Final Research Report
  • [Presentation] 硬骨魚類由来の祖先型ヘモグロビン遺伝子の設計・合成および発現2012

    • Author(s)
      梶原弘毅
    • Organizer
      関東地区生物物理研究会
    • Place of Presentation
      東京農工大学・小金井キャンパス
    • Year and Date
      2012-03-06
    • Related Report
      2011 Annual Research Report
  • [Presentation] ヤツメウナギの祖先型ヘモグロビン遺伝子(node25)の発現系構築2012

    • Author(s)
      幕晋一
    • Organizer
      関東地区生物物理研究会
    • Place of Presentation
      東京農工大学・小金井キャンパス
    • Year and Date
      2012-03-06
    • Related Report
      2011 Annual Research Report
  • [Presentation] サツマハオリムシ(Lamellibrachia satsuma)の巨大V1ヘモグロビンの機能特性解析2012

    • Author(s)
      中川太郎
    • Organizer
      ブルーアース'12シンポジウム
    • Place of Presentation
      東京海洋大学・品川キャンパス
    • Year and Date
      2012-02-22
    • Related Report
      2011 Annual Research Report
  • [Presentation] ヒトヘモグロビンの酸素結合機能にお ける近位ヒスチジンの役割2012

    • Author(s)
      丸山夏未,安芸弥生,長井幸史,今井清博,長友重紀,小倉尚志,北川禎三,長井雅子
    • Organizer
      第85回日本生化学会大会(2P-357
    • Place of Presentation
      福岡国際会議場,マリンメッセ 福岡,福岡県
    • Related Report
      2012 Final Research Report
  • [Presentation] ヒトヘモグロビンのα鎖の近位ヒスチジンのグリシンへの置換が構造と酸素結合機能に与える影響2012

    • Author(s)
      安芸弥生,長井幸史,今井清博,長友重紀,小倉尚志,北川禎三,長井雅子
    • Organizer
      第50回日本生物物理学会年会
    • Place of Presentation
      名古屋大学,愛知県
    • Related Report
      2012 Final Research Report
  • [Presentation] ヒトヘモグロビンのβ145Tyr の Thr または Leu への置換が機能と構造に与える影響2012

    • Author(s)
      一居桃子,長井幸史,今井清博,長井雅子
    • Organizer
      第50回日本生物物理学会年会
    • Place of Presentation
      名古屋大学,愛知県
    • Related Report
      2012 Final Research Report
  • [Presentation] ヘモグロビンの自動酸化速度に対する糖類の効果2012

    • Author(s)
      上原 航,今井清博
    • Organizer
      第50回日本生物物理学会年会
    • Place of Presentation
      名古屋大学,愛知県
    • Related Report
      2012 Final Research Report
  • [Presentation] 硬骨魚類の祖先型 ヘモグロビン遺伝子の設計・合成および その大腸菌内発現2012

    • Author(s)
      杉山 将, 松尾高稔, 関 一葉, 長井幸史, 中川太郎,今井清博
    • Organizer
      第50回日本生物物 理学会年会
    • Place of Presentation
      名古屋大学愛知県
    • Related Report
      2012 Final Research Report
  • [Presentation] トリプトファンの 近紫外円二色性及び紫外共鳴ラマンに基 づ くヘモ グロビ ンの 四次構 造変化 の解 明2012

    • Author(s)
      長井雅子,長友重紀,長井幸史,大久保賢一, 今井清博,北川禎三
    • Organizer
      第39回生体分子科学討論会要旨集
    • Place of Presentation
      東北大学,宮城県
    • Related Report
      2012 Final Research Report
  • [Presentation] ヒトヘモグロビンの酸素結合機能における近位ヒスチジンの役割2012

    • Author(s)
      丸山夏未
    • Organizer
      第85回日本生化学会大会
    • Place of Presentation
      福岡国際会議場(福岡県)
    • Related Report
      2012 Annual Research Report
  • [Presentation] ヒトヘモグロビンのα鎖の近位ヒスチジンのグリシンへの置換が構造と酸素結合機能に与える影響2012

    • Author(s)
      安芸弥生
    • Organizer
      第50回日本生物物理学会年会
    • Place of Presentation
      名古屋大学(愛知県)
    • Related Report
      2012 Annual Research Report
  • [Presentation] ヒトヘモグロビンのβ145TyrのThrまたはLeuへの置換が機能と構造に与える影響2012

    • Author(s)
      一居桃子
    • Organizer
      第50回日本生物物理学会年会
    • Place of Presentation
      名古屋大学(愛知県)
    • Related Report
      2012 Annual Research Report
  • [Presentation] ヘモグロビンの自動酸化速度に対する糖類の効果2012

    • Author(s)
      上原 航
    • Organizer
      第50回日本生物物理学会年会
    • Place of Presentation
      名古屋大学(愛知県)
    • Related Report
      2012 Annual Research Report
  • [Presentation] 硬骨魚類の祖先型ヘモグロビン遺伝子の設計・合成およびその大腸菌内発現2012

    • Author(s)
      杉山 将
    • Organizer
      第50回日本生物物理学会年会
    • Place of Presentation
      名古屋大学(愛知県)
    • Related Report
      2012 Annual Research Report
  • [Presentation] トリプトファンの近紫外円二色性及び紫外共鳴ラマンに基づくヘモグロビンの四次構造変化の解明2012

    • Author(s)
      長井雅子
    • Organizer
      第39回生体分子科学討論会
    • Place of Presentation
      東北大学(宮城県)
    • Related Report
      2012 Annual Research Report
  • [Presentation] 遠位ヒスチジンをロイシンに置換したミオグロビンにおける酸素親和性調節と自動酸化反応の分子機構の解明2012

    • Author(s)
      西山康太郎
    • Organizer
      日本化学会第92春季年会(2012)
    • Place of Presentation
      慶應義塾大学・日吉キャンパス
    • Related Report
      2011 Annual Research Report
  • [Presentation] ウマミオグロビン二量体の立体構造および酸素結合特性2012

    • Author(s)
      長尾聡
    • Organizer
      日本化学会第92春季年会(2012)
    • Place of Presentation
      慶應義塾大学・日吉キャンパス
    • Related Report
      2011 Annual Research Report
  • [Presentation] Design and synthesis of ancestral Osteichthes hemoglobins by reverse molecular phylogenetic analyses2011

    • Author(s)
      梶原弘毅
    • Organizer
      日本生物物理学会第49回年会
    • Place of Presentation
      兵庫県立大学・姫路書写キャンパス
    • Year and Date
      2011-09-16
    • Related Report
      2011 Annual Research Report
  • [Presentation] Effects of the side chains of the heme on circular dichroism (CD) of myoglobin2011

    • Author(s)
      小林智香
    • Organizer
      日本生物物理学会第49回年会
    • Place of Presentation
      兵庫県立大学・姫路書写キャンパス
    • Year and Date
      2011-09-16
    • Related Report
      2011 Annual Research Report
  • [Presentation] サツマハオリムシおよびヒゲムシ(環形動物)の巨大ヘモグロビンの生理機能と構造2011

    • Author(s)
      中川太郎
    • Organizer
      日本比較免疫学会第23回学術集会シンポジウムI.深海生物の共生
    • Place of Presentation
      独立行政法人海洋研究開発機構・横浜研究所(招待講演)
    • Year and Date
      2011-08-23
    • Related Report
      2011 Annual Research Report
  • [Presentation] ミオグロビンの機能調節機構の解明2011

    • Author(s)
      西村龍、松本大地、西山康太郎、柴田友和、深谷昌史、太虎林、長尾聡、松尾貴史、廣田俊、鈴木秋弘、今井清博、石上泉、小倉尚志、根矢三郎、庄司長三、渡辺芳人、山本泰彦
    • Organizer
      第38回生体分子科学討論会
    • Place of Presentation
      筑波大学,茨城県
    • Year and Date
      2011-06-23
    • Related Report
      2012 Final Research Report
  • [Presentation] ヘモグロビン、ミオグロビンのヘム由来の誘起円二色性(CD)2011

    • Author(s)
      長井雅子
    • Organizer
      第38回生体分子科学討論会
    • Place of Presentation
      筑波大学
    • Year and Date
      2011-06-23
    • Related Report
      2011 Annual Research Report
  • [Presentation] ミオグロビンの機能調節機構の解明2011

    • Author(s)
      西村龍
    • Organizer
      第38回生体分子科学討論会
    • Place of Presentation
      筑波大学
    • Year and Date
      2011-06-23
    • Related Report
      2011 Annual Research Report
  • [Presentation] サツマハオリムシ(Lamellibrachia satsuma)の2種類の細胞外巨大ヘモグロビンの機能特性解析2011

    • Author(s)
      中川太郎
    • Organizer
      ブルーアース'11シンポジウム
    • Place of Presentation
      東京海洋大学 品川キャンパス
    • Year and Date
      2011-03-08
    • Related Report
      2010 Annual Research Report
  • [Presentation] Functional characterization of the two extracellular giant hemoglobins of tubeworm Lamellibrachia satsuma2010

    • Author(s)
      Taro Nakagawa
    • Organizer
      第33回日本分子生物学会年会 第83回日本生化学会大会 合同大会
    • Place of Presentation
      神戸国際展示場
    • Year and Date
      2010-12-10
    • Related Report
      2010 Annual Research Report
  • [Presentation] Ancestral hemoglobins of Cyclostomes and Osteichthyes as studied by reverse-molecular phylogenetic analyses2010

    • Author(s)
      Taro Nakagawa
    • Organizer
      第33回日本分子生物学会年会 第83回日本生化学会大会 合同大会
    • Place of Presentation
      神戸国際展示場
    • Year and Date
      2010-12-10
    • Related Report
      2010 Annual Research Report
  • [Presentation] High-level production of the giant hemoglobin subunits of Oligobrachia mashikoi by using Escherichia coli expression systems2010

    • Author(s)
      Taro Nakagawa
    • Organizer
      第33回日本分子生物学会年会 第83回日本生化学会大会 合同大会
    • Place of Presentation
      神戸国際展示場
    • Year and Date
      2010-12-09
    • Related Report
      2010 Annual Research Report
  • [Presentation] 環形動物巨大ヘモグロビンのoxy型とdeoxy型の立体構造2010

    • Author(s)
      沼本修孝
    • Organizer
      第33回日本分子生物学会年会 第83回日本生化学会大会 合同大会
    • Place of Presentation
      神戸国際会議場
    • Year and Date
      2010-12-07
    • Related Report
      2010 Annual Research Report
  • [Presentation] Involvement of aromatic residues in the quaternary structure Transition of human hemoglobin : A near-UV circular dichroism2010

    • Author(s)
      Masako Nagai
    • Organizer
      日本生物物理学会第48回年会
    • Place of Presentation
      東北大学
    • Year and Date
      2010-09-22
    • Related Report
      2010 Annual Research Report
  • [Presentation] Ancestral hemoglobin of Cyclostomata and Osteichthyes as studied By reverse-molecular phylogenetic analyses2010

    • Author(s)
      Taro Nakagawa
    • Organizer
      日本生物物理学会第48回年会
    • Place of Presentation
      東北大学
    • Year and Date
      2010-09-21
    • Related Report
      2010 Annual Research Report
  • [Presentation] Hemoglobin with Cys-93b treated with N-ethylmaleimide shows Smaller dissociation into dieters2010

    • Author(s)
      Takanori Inao
    • Organizer
      日本生物物理学会第48回年会
    • Place of Presentation
      東北大学
    • Year and Date
      2010-09-21
    • Related Report
      2010 Annual Research Report

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Published: 2010-08-23   Modified: 2019-07-29  

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