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ANALYSIS OF EVOLUTIONARY MECHANISM OF DLX3 GENE CO-OPTION IN DEVELOPMENT OF NOVEL APPENDAGES OF VERTEBRATES

Research Project

Project/Area Number 22570218
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Evolutionary biology
Research InstitutionNational Institute of Genetics

Principal Investigator

SUMIYAMA Kenta  国立遺伝学研究所, 集団遺伝研究系, 助教 (00370114)

Project Period (FY) 2010 – 2012
Project Status Completed (Fiscal Year 2012)
Budget Amount *help
¥4,680,000 (Direct Cost: ¥3,600,000、Indirect Cost: ¥1,080,000)
Fiscal Year 2012: ¥910,000 (Direct Cost: ¥700,000、Indirect Cost: ¥210,000)
Fiscal Year 2011: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Fiscal Year 2010: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Keywords遺伝子進化 / シスエレメント進化 / 進化発生 / evo-devo / トランスジェニックマウス / 組織特異的エンハンサー / 転写制御 / Dlx遺伝子 / Tol2トランスポゼース
Research Abstract

Through Dlx3-4 gene enhancer analysis, we found that (1) the core element of brachial arch enhancer I37-2 was conserved between mice and platypus, and branchial arch activity was acquired in placental mammal lineage. (2) I37-1 that shows limbs and hair follicles enhancer activities is quite ancient, conserved even in amphioxus. The core motif plays an important role in Dlx3 gene co-option in development of limbs and hair follicles

Report

(4 results)
  • 2012 Annual Research Report   Final Research Report ( PDF )
  • 2011 Annual Research Report
  • 2010 Annual Research Report
  • Research Products

    (34 results)

All 2013 2012 2011 2010 Other

All Journal Article (12 results) (of which Peer Reviewed: 11 results,  Open Access: 1 results,  Acknowledgement Compliant: 1 results) Presentation (16 results) Book (3 results) Remarks (3 results)

  • [Journal Article] "Theria-specific homeodomain and cis-regulatory element evolution of the Dlx3-4 bigene cluster in 12 different mammalian species."2013

    • Author(s)
      Kenta Sumiyama,Tsutomu Miyake,Jane Grimwood,Andrew Stuart,Mark Dickson,Jeremy Schmutz, Frank H.Ruddle,Richard M.Myers,and Chri T. Amemiya
    • Journal Title

      Journal of Experimental Zoology Part B: Molecular and Developmental Evolution

      Volume: 318 Issue: 8 Pages: 369-350

    • DOI

      10.1002/jez.b.22469

    • Related Report
      2012 Annual Research Report 2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] GDNF and endothelin 3 regulate migration of enteric neural crest-derived cells via PKA and Rac12013

    • Author(s)
      Goto A, Sumiyama K, Kamioka Y, Nakasho E, Ito K, Iwasaki M, Enomoto H, Matsuda M.
    • Journal Title

      Journal of Neuroscience

      Volume: 33 Issue: 11 Pages: 4901-4912

    • DOI

      10.1523/jneurosci.4828-12.2013

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] "The Medaka zic1/zic4 Mutant Provides Molecular Insights into Teleost Caudal Fin Evolution."2012

    • Author(s)
      Yuuta Moriyama, Toru Kawanishi Ryohei Nakamura Tatsuya Tsukahara, Kenta Sumiyama, Maximiliano L. Suster, Koichi Kawakami, Atsushi Toyoda, Asao Fujiyama, Yuuri Yasuoka, Yusuke Nagao, Etsuko Sawatari, Atsushi Shimizu, Yuko Wakamatsu Masahiko Hibi, Masanori Taira, Masataka Okabe, Kiyoshi Naruse, Hisashi Hashimoto, Atsuko Shimada, and Hiroyuki Takeda.
    • Journal Title

      Current Biology

      Volume: 22(7) Pages: 601-607

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] "A living fossil in the genome of a living fossil: Harbinger transposons in the coelacanth genome"2012

    • Author(s)
      Jeramiah J. Smith, Kenta Sumiyama and Chris T. Amemiya
    • Journal Title

      Molecular Biology and Evolution

      Volume: 29(3) Issue: 3 Pages: 985-993

    • DOI

      10.1093/molbev/msr267

    • Related Report
      2012 Final Research Report 2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Live Imaging of Protein Kinase Activities in Transgenic Mice Expressing FRET Biosensors2012

    • Author(s)
      Kamioka, Y., Sumiyama, K., Mizuno, R., Sakia, Y., Hirata, E., Kiyokawa, E., Matsuda, M.
    • Journal Title

      Cell Structure and Function

      Volume: 37 Issue: 1 Pages: 65-73

    • DOI

      10.1247/csf.11045

    • NAID

      130004137578

    • ISSN
      0386-7196, 1347-3700
    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The medaka zic1/zic4 mutant provides molecular insights into teleost caudal fin evolution.2012

    • Author(s)
      Yuuta Moriyama
    • Journal Title

      Current Biology

      Volume: 21 Issue: 7 Pages: 601-607

    • DOI

      10.1016/j.cub.2012.01.063

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A new database (GCD) on genome composition for eukaryote and prokaryote genome sequences and their initial analyses2012

    • Author(s)
      Kirill Kryukov
    • Journal Title

      Genome Biology and Evolution

      Volume: 4 Issue: 4 Pages: 501-512

    • DOI

      10.1093/gbe/evs026

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A SINE-Derived Element Constitutes a Unique Modular Enhancer for Mammalian Diencephalic Fgf8.2012

    • Author(s)
      Akiko Nakanishi, Naoki Kobayashi, Asuka Suzuki-Hirano, Hidenori Nishihara, Takeshi Sasaki, Mika Hirakawa, Kenta Sumiyama, Tomomi Shimogori, Norihiro Okada.
    • Journal Title

      PLoS ONE

      Volume: 7 Issue: 8 Pages: e43785-e43785

    • DOI

      10.1371/journal.pone.0043785

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] "Loss-of-function mutation in a repressor module of human- specifically activated enhancer HACNS1."2011

    • Author(s)
      Kenta Sumiyama and Naruya Saitou
    • Journal Title

      Molecular Biology and Evolution

      Volume: 28(11) Issue: 11 Pages: 3005-3007

    • DOI

      10.1093/molbev/msr231

    • Related Report
      2012 Final Research Report 2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A Mammalian Conserved Element Derived from SINE Displays Enhancer Properties Recapitulating Satb2 Expression in Early-Born Callosal Projection Neurons2011

    • Author(s)
      Tashiro K, Teissier A, Kobayashi N, Nakanishi A, Sasaki T, Yan K, Tarabykin V, Vigier L, Sumiyama K, Hirakawa M, Nishihara H, Pierani A, Okada N
    • Journal Title

      PLoS One

      Volume: 6(12) Issue: 12 Pages: e28497-e28497

    • DOI

      10.1371/journal.pone.0028497

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Evolution of conserved non-coding sequences within the vertebrate Hox clusters through the two-round whole genome duplications revealed by phylogenetic footprinting analysis2010

    • Author(s)
      Matsunami M., et al.
    • Journal Title

      Journal of Molecular Evolution

      Volume: 71 Pages: 427-436

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Close Up実験法:Tol2トランスポゾンを用いた画期的なトランスジェニックマウス作製法2010

    • Author(s)
      隅山健太、川上浩一
    • Journal Title

      実験医学

      Volume: 28 Pages: 2653-2660

    • Related Report
      2010 Annual Research Report
  • [Presentation] A Simple and Highly Efficient Transgenesis Method in Mice with the Tol2 Transposon System and Cytoplasmic Microinjection2013

    • Author(s)
      Kenta Sumiyama
    • Organizer
      CDB Symposium 2013 The Making of a Vertebrate
    • Place of Presentation
      神戸理研CDB
    • Related Report
      2012 Annual Research Report
  • [Presentation] Gsxホメオボックス遺伝子のパラロガス転写調節領域の機能と進化2012

    • Author(s)
      隅山健太
    • Organizer
      日本進化学会第14回東京大会
    • Place of Presentation
      首都大学東京南大沢キャンパス
    • Related Report
      2012 Annual Research Report
  • [Presentation] 人類進化におけるゲノム非コード領域転写調節機能進化解析の試み2012

    • Author(s)
      隅山健太
    • Organizer
      第66回日本人類学会大会
    • Place of Presentation
      慶應義塾大学日吉キャンパス
    • Related Report
      2012 Annual Research Report
  • [Presentation] Function and evolution of paralogous conserved regulatory elements of Gsx homeobox genes2012

    • Author(s)
      隅山健太
    • Organizer
      学融合推進センター・共同研究プロジェクト研究会「脳の進化 -大脳新皮質の起源を尋ねて-」
    • Place of Presentation
      総研大葉山キャンパス
    • Related Report
      2012 Annual Research Report
  • [Presentation] "Evolution of Cis-regulatory Elements in the Vertebrate Dlx Bigene Cluster System"2011

    • Author(s)
      Kenta Sumiyama
    • Organizer
      Symposium of Genomic Conservation and Diversity of Organisms ~Beyond the NGS time of Life Science~
    • Place of Presentation
      Tainan,Taiwan.
    • Year and Date
      2011-12-10
    • Related Report
      2012 Final Research Report
  • [Presentation] Evolution of cis-regulatory elements in the vertebrate Dlx bigene cluster system2011

    • Author(s)
      Kenta Sumiyama
    • Organizer
      Symposium of Genomic Conservation and Diversity of Organisms
    • Place of Presentation
      Tainan, Taiwan(招待講演)
    • Year and Date
      2011-12-10
    • Related Report
      2011 Annual Research Report
  • [Presentation] Toolkit genes, cis-regulatory modules, turnover, and evolvability2011

    • Author(s)
      隅山健太
    • Organizer
      第1回Tokyo Vertebrate Morphology Meeting
    • Place of Presentation
      東京(招待講演)
    • Year and Date
      2011-12-10
    • Related Report
      2011 Annual Research Report
  • [Presentation] 胎盤形成に関与するDlx4遺伝子の獣亜綱(Theria)特異的なタンパク質コード領域および転写制御領域における分子進化と機能解析2011

    • Author(s)
      隅山健太
    • Organizer
      日本進化学会第13回大会
    • Place of Presentation
      京都
    • Year and Date
      2011-07-30
    • Related Report
      2011 Annual Research Report
  • [Presentation] "Theria-specific evolution in both coding and noncoding region of the Dlx4 gene."2011

    • Author(s)
      Kenta Sumiyama
    • Organizer
      Annual Meeting for the Society for Molecular Biology and Evolution (SMBE 2011)
    • Place of Presentation
      京都
    • Year and Date
      2011-07-27
    • Related Report
      2012 Final Research Report
  • [Presentation] Theria-specific evolution in both coding and noncoding region of the Dlx4 gene2011

    • Author(s)
      Kenta Sumiyama
    • Organizer
      SMBE 2011
    • Place of Presentation
      京都
    • Year and Date
      2011-07-27
    • Related Report
      2011 Annual Research Report
  • [Presentation] A simple and highly efficient transgenesis method in mice with the Tol2 transposon system and cytoplasmic microinjection.2010

    • Author(s)
      Sumiyama, K., et al.
    • Organizer
      BMB2010 第33回日本分子生物学会年会
    • Place of Presentation
      神戸
    • Year and Date
      2010-12-10
    • Related Report
      2010 Annual Research Report
  • [Presentation] "Functional evaluation of cis-regulatory elements and their evolution in the vertebrate Dlx3-7 bigene cluster."2010

    • Author(s)
      Kenta Sumiyama
    • Organizer
      NAIST Global COE International Symposium 2010: Plasticity in Development and Evolution
    • Place of Presentation
      奈良
    • Year and Date
      2010-11-11
    • Related Report
      2012 Final Research Report
  • [Presentation] Functional evaluation of cis-regulatory elements and their evolution in the vertebrate Dlx3-7 bigene cluster.2010

    • Author(s)
      Sumiyama, K.
    • Organizer
      NAIST Global COE International Symposium 2010 : Plasticity in Development and Evolution
    • Place of Presentation
      奈良
    • Year and Date
      2010-11-11
    • Related Report
      2010 Annual Research Report
  • [Presentation] The Genetic Basis For Primate Evolution At Cis-Regulatory System Level.2010

    • Author(s)
      Sumiyama, K.
    • Organizer
      International Primatological Society XXIII Congress
    • Place of Presentation
      京都
    • Year and Date
      2010-09-17
    • Related Report
      2010 Annual Research Report
  • [Presentation] 脊椎動物ゲノム重複遺伝子解析で発見された起源が古いcis-elementの機能と進化2010

    • Author(s)
      隅山健太
    • Organizer
      日本進化学会第12回大会
    • Place of Presentation
      東京
    • Year and Date
      2010-08-04
    • Related Report
      2010 Annual Research Report
  • [Presentation] A simple and highly efficient transgenesis method in mice with the Tol2 transposon system and cytoplasmic microinjection.2010

    • Author(s)
      Sumiyama, K., et al.
    • Organizer
      43rd Annual Meeting for the Japanese Society of Developmental Biologists
    • Place of Presentation
      京都
    • Year and Date
      2010-06-20
    • Related Report
      2010 Annual Research Report
  • [Book] 進化学辞典 日本進化学会編2012

    • Author(s)
      隅山健太
    • Publisher
      共立出版
    • Related Report
      2012 Annual Research Report
  • [Book] <series モデル動物利用マニュアル> 生物機能モデルと新しいリソース・ リサーチツール 第6節 新しい生殖工学技術第4項 トランスポゾンを使った 新しい高効率トランスジェニックマウス作製法2011

    • Author(s)
      隅山健太、川上浩一
    • Publisher
      エル・アイ・シー
    • Related Report
      2012 Final Research Report
  • [Book] 生物機能モデルと新しいリソース・リサーチツール第6節新しい生殖工学技術第4項トランスポゾンを使った新しい高効率トランスジェニックマウス作製法2011

    • Author(s)
      隅山健太
    • Publisher
      エル・アイ・シー
    • Related Report
      2011 Annual Research Report
  • [Remarks] 研究者ホームページ(研究内容紹介)

    • URL

      http://sayer.lab.nig.ac.jp/~sumiyama/

    • Related Report
      2012 Final Research Report
  • [Remarks] 隅山健太 研究紹介

    • URL

      http://sayer.lab.nig.ac.jp/~sumiyama/index.html

    • Related Report
      2012 Annual Research Report
  • [Remarks]

    • URL

      http://sayer.lab.nig.ac.jp/~sumiyama/

    • Related Report
      2010 Annual Research Report

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Published: 2010-08-23   Modified: 2019-07-29  

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