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Study on geographical distribution and adaptation mechanisms for environmental factors of soybean-nodulating bradyrhizobia

Research Project

Project/Area Number 22580068
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Plant nutrition/Soil science
Research InstitutionUniversity of Miyazaki

Principal Investigator

SAEKI Yuichi  宮崎大学, 農学部, 教授 (50295200)

Project Period (FY) 2010 – 2012
Project Status Completed (Fiscal Year 2012)
Budget Amount *help
¥4,550,000 (Direct Cost: ¥3,500,000、Indirect Cost: ¥1,050,000)
Fiscal Year 2012: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2011: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2010: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Keywords土壌生物 / 分子生態 / ダイズ根粒菌 / Bradyrhizobium / 微生物生態 / 遺伝子多様性 / ニッチ / 遺伝子多型 / 共生 / Rj遺伝子 / 環境因子 / 緯度経度 / 多様性
Research Abstract

We investigated the relationship between the genetic diversity of indigenous soybean-nodulating bradyrhizobia and their geographical distribution in the United States using nine soil isolates from eight states. The bradyrhizobia were inoculated on three soybean Rj genotypes (non-Rj, Rj2Rj3, and Rj4). We analyzed their genetic diversity and community structure by means of restriction-fragment length polymorphisms of PCR amplicon to target the 16S-23S rRNA gene internal transcribed spacer region, using 11 USDA Bradyrhizobium strains as reference strains. We also performed diversity analysis, multi-dimensional scaling analysis based on the Bray-Curtis index, and polar ordination analysis to describe the structure and geographical distribution of the soybean-nodulating bradyrhizobial community. The major clusters were Bradyrhizobium japonicum Bj123, in the northern U.S., and Bradyrhizobium elkanii in the middle to southern regions. Dominance of bradyrhizobia in a community was generally larger for the cluster belonging to B. elkanii than for the cluster belonging to B. japonicum. The indigenous American soybean-nodulating bradyrhizobial community structure was strongly correlated with latitude. Our results suggest that this community varies geographically.

Report

(4 results)
  • 2012 Annual Research Report   Final Research Report ( PDF )
  • 2011 Annual Research Report
  • 2010 Annual Research Report
  • Research Products

    (19 results)

All 2013 2012 2011 2010

All Journal Article (6 results) (of which Peer Reviewed: 6 results) Presentation (11 results) Book (2 results)

  • [Journal Article] Genetic Diversity and Geographical Distribution of Indigenous Soybean-Nodulating Bradyrhizobia in the United States.2013

    • Author(s)
      S. Shiro, 他
    • Journal Title

      Applied and Environmental Microbiology

      Volume: Vol.79 Issue: 12 Pages: 3610-3618

    • DOI

      10.1128/aem.00236-13

    • Related Report
      2012 Annual Research Report 2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Effect of Rj Genotype and Cultivation Temperature on the Community Structure of Soybean-Nodulating Bradyrhizobia.2012

    • Author(s)
      S. Shiro Y. Saeki, 他
    • Journal Title

      Applied and Environmental Microbiology

      Volume: Vol.78 Issue: 4 Pages: 1243-1250

    • DOI

      10.1128/aem.06239-11

    • Related Report
      2012 Final Research Report 2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Rj (rj) genes involved in nitrogen-fixing root nodule formation in soybean2012

    • Author(s)
      Hayashi, M., Saeki, Y., 他計6名
    • Journal Title

      Breeding Science

      Volume: 61 Issue: 5 Pages: 544-553

    • DOI

      10.1270/jsbbs.61.544

    • NAID

      10030433415

    • ISSN
      1344-7610, 1347-3735
    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Phylogenetic diversity of indigenous cowpea bradyrhizobia from soils in Japan based on sequence analysis of the 16S-23S rRNA internal transcribed spacer (ITS) region2011

    • Author(s)
      Sarr, P.S., Saeki, Y., 他計4名
    • Journal Title

      Systematic and Applied Microbiology

      Volume: 34 Issue: 4 Pages: 285-292

    • DOI

      10.1016/j.syapm.2010.11.021

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Changes in Population Occupancy of Bradyrhizobia under Different Temperature Regimes2010

    • Author(s)
      Y. Saeki et al.
    • Journal Title

      Microbes and Environments

      Volume: 25 Issue: 4 Pages: 309-312

    • DOI

      10.1264/jsme2.ME10128

    • NAID

      10027420110

    • ISSN
      1342-6311, 1347-4405
    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Changes in Population Occupancy of Bradyrhizobia under Different Temperature Regimes2010

    • Author(s)
      Yuichi SAEKI
    • Journal Title

      Microbes and Environments

      Volume: 25 Pages: 309-312

    • NAID

      10027420110

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Presentation] アメリカ土着ダイズ根粒菌の多様性と地理的分布2012

    • Author(s)
      佐伯雄一
    • Organizer
      日本土壌肥料学会九州支部
    • Place of Presentation
      鹿児島
    • Related Report
      2012 Annual Research Report 2012 Final Research Report
  • [Presentation] アメリカ土着ダイズ根粒菌の地理的分布と群集構造解析2012

    • Author(s)
      佐伯雄一
    • Organizer
      日本土壌肥料学会
    • Place of Presentation
      鳥取
    • Related Report
      2012 Annual Research Report 2012 Final Research Report
  • [Presentation] アメリカの土着ダイズ根粒菌の多様性と地理的分布2011

    • Author(s)
      城惣吉・佐伯理奈・Gilbert C. Sigua・山本昭洋・佐伯雄一
    • Organizer
      日本土壌肥料学会九州支部春季例会
    • Place of Presentation
      九州大学(福岡)
    • Related Report
      2012 Final Research Report 2011 Annual Research Report
  • [Presentation] 宿主ダイズの Rj 遺伝子型と栽培温度によるダイズ根粒菌群集構造に関する研究2011

    • Author(s)
      城 惣吉・山本昭洋・梅原洋佐・林 正紀・佐伯雄一
    • Organizer
      日本土壌肥料学会2011年度つくば大会
    • Place of Presentation
      つくば(茨城県)
    • Related Report
      2012 Final Research Report
  • [Presentation] 多次元尺度構成法によるダイズ根粒菌の地理的分布解析2011

    • Author(s)
      佐伯雄一・城 惣吉・田島稔之・山本昭洋
    • Organizer
      日本土壌微生物学会2011年度大会
    • Place of Presentation
      宮城県大崎市
    • Related Report
      2012 Final Research Report 2011 Annual Research Report
  • [Presentation] 宿主ダイズのRj遺伝子型と栽培温度によるダイズ根粒菌群集構造に関する研究2011

    • Author(s)
      城惣吉・山本昭洋・梅原洋佐・林正紀・佐伯雄一
    • Organizer
      日本土壌肥料学会2011年度つくば大会
    • Place of Presentation
      つくば(茨城県)
    • Related Report
      2011 Annual Research Report
  • [Presentation] 国内におけるダイズ根粒菌の分布と多様性における一考察2010

    • Author(s)
      佐伯雄一、 他
    • Organizer
      日本土壌肥料学会九州支部春季例会
    • Place of Presentation
      宮崎大学(宮崎)
    • Related Report
      2012 Final Research Report 2010 Annual Research Report
  • [Presentation] 宿主ダイズのRj 遺伝子型と栽培温度によるダイズ根粒菌の感染傾向に関する研究2010

    • Author(s)
      佐伯雄一、 他
    • Organizer
      日本土壌肥料学会
    • Place of Presentation
      北海道大学(札幌)
    • Related Report
      2012 Final Research Report
  • [Presentation] Effect of Rj-genotype and cultivation temperature on the community of soybean-nodulating bradyrhizobia2010

    • Author(s)
      Yuichi SAEKI et al.
    • Organizer
      1st Asian Conference on Plant-Microbe Symbiosis and Nitrogen Fixation
    • Place of Presentation
      宮崎
    • Related Report
      2012 Final Research Report
  • [Presentation] 宿主ダイズのRj遺伝子型と栽培温度によるダイズ根粒菌の感染傾向に関する研究2010

    • Author(s)
      佐伯雄一, 他
    • Organizer
      日本土壌肥料学会
    • Place of Presentation
      北海道大学(札幌)
    • Related Report
      2010 Annual Research Report
  • [Presentation] Effect of Rj-genotype and cultivation temperratur on the community of soybean-nodulating bradyrhizobia2010

    • Author(s)
      Yuichi SAEKI, et al.
    • Organizer
      1^<st> Asian Conference on Plant-Microbe Symbiosis and Nitrogen Fixation
    • Place of Presentation
      宮崎大学(宮崎)
    • Related Report
      2010 Annual Research Report
  • [Book] Characterization of Soybean-Nodulating Rhizobial Communities and DiversityIn Soybean-Molecular Aspects of Breeding. Edited by Aleksandra Sudaric2011

    • Author(s)
      Yuichi Saeki (共著)
    • Total Pages
      514
    • Publisher
      InTech
    • Related Report
      2012 Final Research Report
  • [Book] Characterization of Soybean-Nodulating Rhizobial Communities and Diversity In Soybean-Molecular Aspects of Breeding(Edited by Aleksandra Sudaric)2011

    • Author(s)
      Yuichi Saeki(共著)
    • Publisher
      InTech
    • Related Report
      2011 Annual Research Report

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Published: 2010-08-23   Modified: 2019-07-29  

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