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Comprehensive analysis of the biosynthetic machinery and their regulatory system for secondary metabolites in Streptomyces

Research Project

Project/Area Number 22580121
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Bioproduction chemistry/Bioorganic chemistry
Research InstitutionHiroshima University

Principal Investigator

ARAKAWA Kenji  広島大学, 大学院・先端物質科学研究科, 准教授 (80346527)

Project Period (FY) 2010 – 2012
Project Status Completed (Fiscal Year 2012)
Budget Amount *help
¥4,550,000 (Direct Cost: ¥3,500,000、Indirect Cost: ¥1,050,000)
Fiscal Year 2012: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2011: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2010: ¥2,080,000 (Direct Cost: ¥1,600,000、Indirect Cost: ¥480,000)
Keywords放線菌 / ポリケチド / 生合成 / ピロロキノリンキノン / 制御遺伝子 / オートレギュレーター / 転写活性化因子 / ゲノムマイニング / アゾキシアルケン / ケト還元酵素 / ポリエンマクロライド / ブテノライド
Research Abstract

We carried out comprehensive analysis of the biosynthetic machinery and their regulatory system for lankacidin and lankamycin production in Streptomyces rochei 7434AN4. The disruptant of lkmE encoding type-II thioesterase accumulated 15-nor-LM derivatives, suggesting LkmE is responsible for hydrolysis of aberrant starter units for LM biosynthesis. We elucidated the structure of the signaling molecules SRBs that induce LC and LM production. Furthermore, the extensive analysis of regulatory genes revealed the positive regulation of LM biosynthesis by two SARP genes.

Report

(4 results)
  • 2012 Annual Research Report   Final Research Report ( PDF )
  • 2011 Annual Research Report
  • 2010 Annual Research Report
  • Research Products

    (55 results)

All 2013 2012 2011 2010 Other

All Journal Article (14 results) (of which Peer Reviewed: 12 results) Presentation (37 results) (of which Invited: 3 results) Remarks (4 results)

  • [Journal Article] The butenolide signaling molecules SRB1 and SRB2 induce lankacidin and lankamycin production in Streptomyces rochei2012

    • Author(s)
      K. Arakawa, N. Tsuda, A. Taniguchi, H. Kinashi
    • Journal Title

      ChemBioChem

      Volume: 13 Pages: 1447-1457

    • NAID

      120006799348

    • Related Report
      2012 Annual Research Report 2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Isolation of borrelidin as a phytotoxic compound from a potato pathogenic Streptomycesstrain2012

    • Author(s)
      Z. Cao, G. Khodakaramian, K. Arakawa, H. Kinashi
    • Journal Title

      Biosci. Biotechnol. Biochem

      Volume: 76 Pages: 353-357

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Isolation of Borrelidin as a Phytotoxic Compound from a Potato Pathogenic Streptomyces Strain2012

    • Author(s)
      曹 志生
    • Journal Title

      Bioscience, Biotechnology, and Biochemistry

      Volume: 76 Issue: 2 Pages: 353-357

    • DOI

      10.1271/bbb.110799

    • NAID

      10030400084

    • ISSN
      0916-8451, 1347-6947
    • Related Report
      2012 Annual Research Report 2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Indomethacin Induction of Metamorphosis from the Asexual Stage to Sexual Stage in the Moon Jellyfish, <i>Aurelia aurita</i>2012

    • Author(s)
      国吉 久人
    • Journal Title

      Bioscience, Biotechnology, and Biochemistry

      Volume: 76 Issue: 7 Pages: 1397-1400

    • DOI

      10.1271/bbb.120076

    • NAID

      130001862721

    • ISSN
      0916-8451, 1347-6947
    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Diversity between PKS and FAS2012

    • Author(s)
      荒川 賢治
    • Journal Title

      Nature Chem. Biol.

      Volume: 8 Issue: 7 Pages: 604-605

    • DOI

      10.1038/nchembio.1007

    • Related Report
      2012 Annual Research Report
  • [Journal Article] Crystal structure of the synergistic antibiotic pair, lankamycin and lankacidin, in complex with the large ribosomal subunit2011

    • Author(s)
      M. J. Belousoff, T. Shapira, A. Bashan, E. Zimmerman, H. Rozenberg, K. Arakawa, H. Kinashi, A. Yonath
    • Journal Title

      Proc. Natl. Acad. Sci. USA

      Volume: 108 Pages: 2717-2722

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Isolation, structural elucidation, and biosynthesis of 15-norlankamycin derivatives produced by a type-II thioesterase disruptant of Streptomyces rochei2011

    • Author(s)
      K. Arakawa, Z. Cao, N. Suzuki, H. Kinashi
    • Journal Title

      Tetrahedron

      Volume: 67 Pages: 5199-5205

    • Related Report
      2012 Final Research Report 2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] pSLA2-M of Streptomyces rocheiis a composite linear plasmid characterized by self-defense genes and homology with pSLA2-L2011

    • Author(s)
      Y. Yang, T. Kurokawa, Y. Takahama, Y. Nindita, S. Mochizuki, K. Arakawa, S. Endo, H. Kinashi
    • Journal Title

      Biosci. Biotechnol. Biochem

      Volume: 75 Pages: 1147-1153

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] pSLA2-M of Streptomyces rochei Is a Composite Linear Plasmid Characterized by Self-Defense Genes and Homology with pSLA2-L2011

    • Author(s)
      楊英杰
    • Journal Title

      Bioscience, Biotechnology, and Biochemistry

      Volume: 75 Issue: 6 Pages: 1147-1153

    • DOI

      10.1271/bbb.110054

    • NAID

      10029328316

    • ISSN
      0916-8451, 1347-6947
    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The biosynthesis of 3-amino-5-hydroxybenzoic acid (AHBA), the precursor of mC_7N-units in ansamycin and mitomycin antibiotics-A review2011

    • Author(s)
      Heinz G.Floss
    • Journal Title

      Journal of Antibiotics

      Volume: 64 Pages: 35-44

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Crystal structure of the synergistic antibiotic pair, lankamycin and lankacidin, in complex with the large ribosomal subunit2011

    • Author(s)
      Matthew J.Belousoff
    • Journal Title

      Proceedings of the National Academy of Sciences of the United States of America

      Volume: 108 Pages: 2717-2722

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Regulation of lankamycin biosynthesis in Streptomyces rocheiby two SARP genes, srrYand srrZ2010

    • Author(s)
      T. Suzuki, S. Mochizuki, S. Yamamoto, K. Arakawa, H. Kinashi
    • Journal Title

      Biosci. Biotechnol. Biochem

      Volume: 74 Pages: 819-827

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Regulation of lankamycin biosynthesis in Streptomyces rochei by two SARP genes, srrY and srrZ2010

    • Author(s)
      鈴木敏弘
    • Journal Title

      Bioscience, Biotechnology, and Biochemistry

      Volume: 74 Pages: 819-827

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Characterization of the biosynthetic gene clusters located on the Streptomyces linear plasmid2010

    • Author(s)
      荒川賢治
    • Journal Title

      Actinomycetologica

      Volume: 24 Pages: 24-30

    • NAID

      10026449394

    • Related Report
      2010 Annual Research Report
  • [Presentation] 放線菌線状プラスミドにコードされた抗生物質生合成クラスターの遺伝学的・生物有機化学的解析2013

    • Author(s)
      荒川賢治
    • Organizer
      日本農芸化学会・農芸化学奨励賞
    • Place of Presentation
      仙台
    • Year and Date
      2013-03-24
    • Related Report
      2012 Final Research Report
  • [Presentation] 放線菌線状プラスミドにコードされた抗生物質生合成クラスターの遺伝学的・生物有機化学的解析2013

    • Author(s)
      荒川 賢治
    • Organizer
      2013年度日本農芸化学会大会
    • Place of Presentation
      仙台・東北大学
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] 放線菌Streptomyces rocheiの抗生物質生産を誘導するシグナル分子SRBの生合成機構2013

    • Author(s)
      津田 直人
    • Organizer
      2013年度日本農芸化学会大会
    • Place of Presentation
      仙台・東北大学
    • Related Report
      2012 Annual Research Report
  • [Presentation] Streptomyces rocheiの多重遺伝子破壊株が生産する代謝産物の化学構造および生合成機構の解析2013

    • Author(s)
      國武 博文
    • Organizer
      2013年度日本農芸化学会大会
    • Place of Presentation
      仙台・東北大学
    • Related Report
      2012 Annual Research Report
  • [Presentation] 抗生物質ランカサイジン生合成におけるピロロキノリンキノン要求性デヒドロゲナーゼの機能解析2013

    • Author(s)
      山内 佑介
    • Organizer
      2013年度日本農芸化学会大会
    • Place of Presentation
      仙台・東北大学
    • Related Report
      2012 Annual Research Report
  • [Presentation] 放線菌Streptomyces rocheiのPQQ破壊株が生産する抗カビ化合物ペンタマイシンの解析2013

    • Author(s)
      片岡 憂祐
    • Organizer
      2013年度日本農芸化学会大会
    • Place of Presentation
      仙台・東北大学
    • Related Report
      2012 Annual Research Report
  • [Presentation] Analysis of the essential gene for a linear topology of the Streptomyces rochei replicons2013

    • Author(s)
      Yosi NINDITA
    • Organizer
      2013年度日本農芸化学会大会
    • Place of Presentation
      仙台・東北大学
    • Related Report
      2012 Annual Research Report
  • [Presentation] Isolation, structural elucidation, and biosynthesis of butenolide signaling molecules that induce lankacidin and lankamycin production in Streptomycesrochei2012

    • Author(s)
      K. Arakawa, N. Tsuda, A. Taniguchi, H. Kinashi
    • Organizer
      International Conference of Natural Products Biosynthesis
    • Place of Presentation
      淡路島
    • Year and Date
      2012-06-18
    • Related Report
      2012 Final Research Report
  • [Presentation] Streptomyces rochei 7434AN4株の線状染色体の塩基配列解析2012

    • Author(s)
      曹志生
    • Organizer
      日本農芸化学会2012年度大会
    • Place of Presentation
      京都女子大(京都市)
    • Year and Date
      2012-03-24
    • Related Report
      2011 Annual Research Report
  • [Presentation] Streptomyces rocheiのPQQ生合成遺伝子破壊株の代謝産物解析2012

    • Author(s)
      荒川賢治
    • Organizer
      日本農芸化学会2012年度大会
    • Place of Presentation
      京都女子大(京都市)
    • Year and Date
      2012-03-23
    • Related Report
      2011 Annual Research Report
  • [Presentation] Isolation, structural elucidation, and biosynthesis of butenolide signaling molecules that induce lankacidin and lankamycin production in Streptomyces rochei2012

    • Author(s)
      荒川 賢治
    • Organizer
      International Conference of Natural Products Biosynthesis (ICNPB)
    • Place of Presentation
      淡路島
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] Biosynthesis of the butenolide signaling molecules that induce lankacidin and lankamycin production in Streptomyces rochei2012

    • Author(s)
      荒川 賢治
    • Organizer
      8th Meeting on Natural Product Biosynthesis
    • Place of Presentation
      静岡県立大学
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] Analysis of the circularization of the linear chromosome of Streptomyces rochei2012

    • Author(s)
      Yosi NINDITA
    • Organizer
      2012年度日本放線菌学会大会
    • Place of Presentation
      東京・府中
    • Related Report
      2012 Annual Research Report
  • [Presentation] Streptomyces rochei変異株が生産する抗カビ化合物ペンタマイシンの単離および生合成クラスターの解析2012

    • Author(s)
      片岡 憂祐
    • Organizer
      2012年度日本放線菌学会大会
    • Place of Presentation
      東京・府中
    • Related Report
      2012 Annual Research Report
  • [Presentation] 放線菌Streptomyces rocheiの抗生物質生産を誘導するシグナル分子SRBの生合成機構に関する研究2012

    • Author(s)
      津田 直人
    • Organizer
      2012年度日本放線菌学会大会
    • Place of Presentation
      東京・府中
    • Related Report
      2012 Annual Research Report
  • [Presentation] 放線菌Streptomyces rochei 7434AN4株の抗生物質生産を誘導するブテノライド型シグナル分子の単離・構造決定および生物活性2012

    • Author(s)
      荒川 賢治
    • Organizer
      第64回日本生物工学会大会
    • Place of Presentation
      神戸国際会議場
    • Related Report
      2012 Annual Research Report
  • [Presentation] 放線菌Streptomyces rocheiのPQQ遺伝子破壊株における代謝産物解析2011

    • Author(s)
      荒川賢治
    • Organizer
      第7回生合成勉強会
    • Place of Presentation
      東京工業大学(東京都目黒区)(招待講演)
    • Year and Date
      2011-12-26
    • Related Report
      2011 Annual Research Report
  • [Presentation] Isolation, structural elucidation, and biological activity of the novel γ-butenolide signaling molecules SRBs that elicit antibiotic production in Streptomyces rochei 7434AN42011

    • Author(s)
      荒川賢治
    • Organizer
      The 16^<th> International Symposium on the Biology of Actinomycetes
    • Place of Presentation
      メキシコ合衆国プエルトバジャルタ
    • Year and Date
      2011-12-12
    • Related Report
      2011 Annual Research Report
  • [Presentation] 14員環マクロライド抗生物質ランカマイシンの生合成経路2011

    • Author(s)
      荒川賢治
    • Organizer
      第48回天然有機化合物討論会
    • Place of Presentation
      大阪国際交流センター(大阪市)
    • Year and Date
      2011-09-27
    • Related Report
      2011 Annual Research Report
  • [Presentation] Isolation and structural elucidation of the novel ・-butenolide signaling molecules SRBs that switch on antibiotic production in Streptomyces rochei7434AN42011

    • Author(s)
      K. Arakawa, A. Taniguchi, N. Tsuda, H. Kinashi
    • Organizer
      International Union of Microbiological Societies 2011 Congress
    • Place of Presentation
      札幌
    • Year and Date
      2011-09-08
    • Related Report
      2012 Final Research Report
  • [Presentation] Isolation and structural elucidation of the novel γ-butenolide signaling molecules SRBs that switch on antibiotic production in Streptomyces rochei 7434AN42011

    • Author(s)
      荒川賢治
    • Organizer
      International Union of Microbiological Societies 2011 Congress
    • Place of Presentation
      札幌コンベンションセンター(札幌市)
    • Year and Date
      2011-09-08
    • Related Report
      2011 Annual Research Report
  • [Presentation] Analysis of the terminal sequence, deletion, and circularization of the linear chromosome of Streptomyces rochei2011

    • Author(s)
      曹志生
    • Organizer
      International Union of Microbiological Societies 2011 Congress
    • Place of Presentation
      札幌コンベンションセンター(札幌市)
    • Year and Date
      2011-09-08
    • Related Report
      2011 Annual Research Report
  • [Presentation] The role of two repressor genes, srrB and srrC, for the production of secondatv metabolites in Streptomyces rochei2011

    • Author(s)
      津田直人
    • Organizer
      International Union of Microbiological Societies 2011 Congress
    • Place of Presentation
      札幌コンベンションセンター(札幌市)
    • Year and Date
      2011-09-08
    • Related Report
      2011 Annual Research Report
  • [Presentation] 抗生物質生産を誘導するシグナル分子の単離・構造決定およびその生合成2011

    • Author(s)
      荒川賢治
    • Organizer
      第6回生合成勉強会
    • Place of Presentation
      理化学研究所(埼玉県和光市)(招待講演)
    • Year and Date
      2011-07-02
    • Related Report
      2011 Annual Research Report
  • [Presentation] Streptomyces rochei 7434AN4株の抗生物質生産を誘導する新規γ-butenolideシグナル分子SRBの単離・構造決定および生物活性2011

    • Author(s)
      荒川賢治
    • Organizer
      日本農芸化学会2011年度大会
    • Place of Presentation
      京都女子大(京都市)
    • Year and Date
      2011-03-27
    • Related Report
      2010 Annual Research Report
  • [Presentation] Streptomyces rochei7434AN4株の線状染色体の塩基配列解析2011

    • Author(s)
      曹志生
    • Organizer
      日本農芸化学会2011年度大会
    • Place of Presentation
      京都女子大(京都市)
    • Year and Date
      2011-03-26
    • Related Report
      2010 Annual Research Report
  • [Presentation] 放線菌Streptomyces rochei7434AN4株の二次代謝シグナル伝達経路におけるTetR型リプレッサーの役割2011

    • Author(s)
      日野出嵩裕
    • Organizer
      日本農芸化学会2011年度大会
    • Place of Presentation
      京都女子大(京都市)
    • Year and Date
      2011-03-26
    • Related Report
      2010 Annual Research Report
  • [Presentation] Biosynthesis of the 17-membered polyketide antibiotic lankacidin produced by Streptomyces rochei7434AN42010

    • Author(s)
      K. Arakawa, S. Tatsuno, H. Kinashi
    • Organizer
      Pacifichem 2010 Congress
    • Place of Presentation
      米国ハワイ州ホノルル
    • Year and Date
      2010-12-15
    • Related Report
      2012 Final Research Report
  • [Presentation] Biosynthesis of the 17-membered polyketide antibiotic lankacidin produced by Streptomyces rochei 7434AN42010

    • Author(s)
      荒川賢治
    • Organizer
      Pacifichem 2010 Congress
    • Place of Presentation
      米国ハワイ州ホノルル
    • Year and Date
      2010-12-15
    • Related Report
      2010 Annual Research Report
  • [Presentation] 二次代謝および形態分化に関与する放線菌線状プラスミドの解析2010

    • Author(s)
      荒川賢治
    • Organizer
      微化研セミナー
    • Place of Presentation
      微生物化学研究所(東京都品川区)(招待講演)
    • Year and Date
      2010-10-01
    • Related Report
      2010 Annual Research Report
  • [Presentation] Streptomyces rochei7434AN4株の線状染色体の構造解析2010

    • Author(s)
      曹志生
    • Organizer
      2010年度日本放線菌学会大会
    • Place of Presentation
      東京都江戸川区
    • Year and Date
      2010-09-03
    • Related Report
      2010 Annual Research Report
  • [Presentation] Streptomyces rocheiの抗生物質生合成におけるTetR型リプレッサーSrrBの機能解析2010

    • Author(s)
      鈴木敏弘
    • Organizer
      2010年度日本放線菌学会大会
    • Place of Presentation
      東京都江戸川区
    • Year and Date
      2010-09-02
    • Related Report
      2010 Annual Research Report
  • [Presentation] ランカマイシン生合成に関与する水酸化酵素LkmFの基質特異性の解析2010

    • Author(s)
      近藤寿志
    • Organizer
      2010年度日本放線菌学会大会
    • Place of Presentation
      東京都江戸川区
    • Year and Date
      2010-09-02
    • Related Report
      2010 Annual Research Report
  • [Presentation] 放線菌Streptomyces rochei 7434AN4株の生産する抗生物質の生合成機構解析2010

    • Author(s)
      荒川賢治
    • Organizer
      2010年度生合成勉強会
    • Place of Presentation
      東京大学薬学部(東京都文京区)(招待講演)
    • Year and Date
      2010-07-10
    • Related Report
      2010 Annual Research Report
  • [Presentation] Streptomyces rocheiの抗生物質生合成における転写活性化機構の解析2010

    • Author(s)
      鈴木敏弘
    • Organizer
      日本農芸化学会第27回中四国支部会
    • Place of Presentation
      広島大学(東広島市)
    • Year and Date
      2010-06-05
    • Related Report
      2010 Annual Research Report
  • [Presentation] Streptomyces rochei 7434AN4株の線状ゲノムの末端構造解析2010

    • Author(s)
      曹志生
    • Organizer
      日本農芸化学会第27回中四国支部会
    • Place of Presentation
      広島大学(東広島市)
    • Year and Date
      2010-06-05
    • Related Report
      2010 Annual Research Report
  • [Presentation] Analysis of the genes essential for a linear topology of Streptomyces replicons2010

    • Author(s)
      Yosi NINDITA
    • Organizer
      日本農芸化学会第27回中四国支部会
    • Place of Presentation
      広島大学(東広島市)
    • Year and Date
      2010-06-05
    • Related Report
      2010 Annual Research Report
  • [Remarks]

    • URL

      http://home.hiroshima-u.ac.jp/mbiotech/5lab/index.html

    • Related Report
      2012 Final Research Report
  • [Remarks] 研究室のホームページ

    • URL

      http://home.hiroshima-u.ac.jp/mbiotech/5lab/index.html

    • Related Report
      2012 Annual Research Report
  • [Remarks] 研究室のホームページ

    • URL

      http://home.hiroshima-u.ac.jp/mbiotech/5lab/index.html

    • Related Report
      2011 Annual Research Report
  • [Remarks] 研究室のホームページ

    • URL

      http://home.hiroshima-u.ac.jp/mbiotech/hosenkin_lab/hosen_lab.html

    • Related Report
      2010 Annual Research Report

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Published: 2010-08-23   Modified: 2019-07-29  

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