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High-throughput multiplex quantitation of urinary protein biomarkers using a triple quadrupole mass spectrometer

Research Project

Project/Area Number 22590881
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Kidney internal medicine
Research InstitutionNiigata University

Principal Investigator

YOSHIDA Yutaka  新潟大学, 医歯学系, 講師 (40182795)

Co-Investigator(Kenkyū-buntansha) YAMAMOTO Tadashi  新潟大学, 医歯学系, 教授 (30092737)
Project Period (FY) 2010 – 2012
Project Status Completed (Fiscal Year 2012)
Budget Amount *help
¥4,160,000 (Direct Cost: ¥3,200,000、Indirect Cost: ¥960,000)
Fiscal Year 2012: ¥910,000 (Direct Cost: ¥700,000、Indirect Cost: ¥210,000)
Fiscal Year 2011: ¥2,080,000 (Direct Cost: ¥1,600,000、Indirect Cost: ¥480,000)
Fiscal Year 2010: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Keywords腎臓学 / 尿バイオマーカー / 尿プロテオーム / 分析化学 / 質量分析 / 多項目同時定量 / AKIバイオマーカー / 尿バイオマーカーパネル化
Research Abstract

A Proteomic analysis of normal urine proteome and seeking of urinary proteins originated from the glomerulus, we found biomarker candidates of tubular injury (NGAL, L-FABP, KIM-1, Megalin) and glomerulus injury (Podocalyxin, SHPS-1, Crumbs-like protein 2). We now constructed SRM transition conditions for multiplexed assay of these biomarkers using TripleQ-mass spectrometer.

Report

(4 results)
  • 2012 Annual Research Report   Final Research Report ( PDF )
  • 2011 Annual Research Report
  • 2010 Annual Research Report
  • Research Products

    (44 results)

All 2013 2012 2011 2010 Other

All Journal Article (12 results) (of which Peer Reviewed: 12 results) Presentation (28 results) (of which Invited: 1 results) Remarks (4 results)

  • [Journal Article] Profiling and annotation of human kidney glomerulus proteome2013

    • Author(s)
      Cui Z, Yoshida Y, Xu B, Zhang Y, Nameta M, Magdeldin S, Makiguchi T, Ikoma T, Fujinaka H, Yaoita E, Yamamoto T
    • Journal Title

      Proteome Sci

      Volume: 11 Issue: 1 Pages: 13-13

    • DOI

      10.1186/1477-5956-11-13

    • Related Report
      2012 Annual Research Report 2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Profiling of kidney vascular endothelial cell plasma membrane proteins by liquid chromatography-tandem mass spectrometry2012

    • Author(s)
      Liu Z, Xu B, Nameta M, Zhang Y, Magdeldin S, Yoshida Y, Yamamoto K, Fujinaka H, Yaoita E, Tasaki M, Nakagawa Y, Saito K, Takahashi K, Yamamoto T
    • Journal Title

      Clin Exp Nephrol

      Volume: 掲載予定 Issue: 3 Pages: 327-337

    • DOI

      10.1007/s10157-012-0708-1

    • NAID

      10031184238

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Murine colon proteome and characterization of the protein pathways.2012

    • Author(s)
      Magdeldin S
    • Journal Title

      BioData Min.

      Volume: 5 Issue: 1 Pages: 11-11

    • DOI

      10.1186/1756-0381-5-11

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Proteomic approach to human kidney glomerulus prepared by laser microdissection from frozen biopsy specimens: exploration of proteome after removal of blood-derived proteins2012

    • Author(s)
      Yoshida Y, Nameta M, Kuwano M, Zhang Y, Bo X, Magdeldin S, Cui Z, Fujinaka H, Yaoita E, Tomonaga T, Yamamoto T
    • Journal Title

      Proteomics Clin Appl

      Volume: 6 Issue: 7-8 Pages: 412-417

    • DOI

      10.1002/prca.201200016

    • Related Report
      2012 Annual Research Report 2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Comparison of human glomerulus proteomic profiles obtained from low quantities of samples by different mass spectrometry with the comprehe nsive database2011

    • Author(s)
      Ying Zhang
    • Journal Title

      Proteome Science

      Volume: VOL.9 Issue: 1 Pages: 47-57

    • DOI

      10.1186/1477-5956-9-47

    • Related Report
      2012 Final Research Report 2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Usage of electrostatic eliminator reduces human keratin contamination significantly in gel-based proteomics analysis2011

    • Author(s)
      許波
    • Journal Title

      Journal of Proteomics

      Volume: VOL.74 Issue: 7 Pages: 1022-1029

    • DOI

      10.1016/j.jprot.2011.03.001

    • Related Report
      2012 Final Research Report 2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Novel expression of claudin-5 in glomerular podocytes2011

    • Author(s)
      Koda R, Zhao L, Yaoita E, Yoshida Y, Tsukita S, Tamura A, Nameta M, Zhang Y, Fujinaka H, Magdeldin S, Xu B, Narita I, Yamamoto T
    • Journal Title

      Cell Tissue Res

      Volume: 343 Issue: 3 Pages: 637

    • DOI

      10.1007/s00441-010-1117-y

    • URL

      https://pure.teikyo.jp/en/publications/a4f57803-0b52-4988-8b59-8d9975cb4f3a

    • Related Report
      2012 Final Research Report 2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Differential proteomic shotgun analysis elucidates involvement of water channel aquaporin 8 in presence of α-amylase in the colon2010

    • Author(s)
      Magdeldin S, Li H, Yoshida Y, Satokata I, Maeda Y, Yokoyama M, Enany S, Zhang Y, Xu B, Fujinaka H, Yaoita E, Yamamoto T
    • Journal Title

      J Proteome Res

      Volume: 9 Issue: 12 Pages: 6635-46

    • DOI

      10.1021/pr100789v

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Glomerular proteins related to slit diaphragm and matrix adhesion inthe foot processes are highly tyrosine phosphorylated in the normal ratrat kidney.2010

    • Author(s)
      Y.Zhang
    • Journal Title

      Nephrol.Dial.Transplant.

      Volume: 25 Pages: 1785-1795

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Functional proteomic analysis of experimental autoimmune myocarditis-Induced chronic heart failure in the rat2010

    • Author(s)
      Y.Sanzen
    • Journal Title

      Biol.Pharm.Bull.

      Volume: 33 Pages: 477-486

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Comparison of two dimensional electrophoresis of mouse colonProteomes before and after knocking out Aquaporin 82010

    • Author(s)
      S.Magdeldin
    • Journal Title

      J Proteomics

      Volume: 10 Pages: 2031-2010

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Differential proteomic shotgun analysis elucidates involvement of water Channel aquaporin 8 in presence of alpha-amylase in the colon.2010

    • Author(s)
      S.Magdeldin
    • Journal Title

      J Proteome Res.

      Volume: 6 Pages: 6635-6646

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Presentation] Comparative proteomic analysis of human glomerulus prepared by laser microdissection from frozen and FFPE kidney tissues2012

    • Author(s)
      Yutaka Yoshida
    • Organizer
      8th Management Committee meeting of the COST action EuroKUP (BM 0702)
    • Place of Presentation
      Athens, Aegeon Hotel(招待講演)
    • Year and Date
      2012-03-30
    • Related Report
      2011 Annual Research Report
  • [Presentation] Increased identification of low-abundance, insoluble proteins of glomerulus laser-microdissected from frozen tissue sections exposed to repeated PBS washing2012

    • Author(s)
      Yoshida Y et al
    • Organizer
      第11回国際ヒトプロテオーム機構学術集会
    • Place of Presentation
      ボストン(アメリカ合衆国)
    • Related Report
      2012 Final Research Report
  • [Presentation] HKUPP: Human Kidney andUrine Proteome Project2012

    • Author(s)
      吉田 豊
    • Organizer
      日本プロテオーム学会2012年大会(第10回日本ヒト プロテオーム機構)
    • Place of Presentation
      東京
    • Related Report
      2012 Final Research Report
  • [Presentation] 凍結腎生検試料からLaser microdissectionにより調製した糸球体のプロテオーム解析:血液由来タンパク質の除去2012

    • Author(s)
      吉田豊他
    • Organizer
      日本プロテオーム学会2012年大会(第10回日本ヒトプロテオーム機構)
    • Place of Presentation
      東京
    • Related Report
      2012 Final Research Report
  • [Presentation] Increased identification of low-abundance, insoluble proteins of glomerulus laser-microdissected from frozen tissue sections exposed to repeated PBS washing.2012

    • Author(s)
      Yutaka Yoshida
    • Organizer
      第11回国際ヒトプロテオーム機構学術集会
    • Place of Presentation
      ボストン (アメリカ合衆国)
    • Related Report
      2012 Annual Research Report
  • [Presentation] HKUPP: Human Kidney and Urine Proteome Project.2012

    • Author(s)
      吉田 豊
    • Organizer
      日本プロテオーム学会2012年大会(第10回日本ヒトプロテオーム機構)
    • Place of Presentation
      東京
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] Extensive profiling of human urine proteome : construction of SRM transitions for quantification of urinary biomarkers for acute and chronic kidney diseases2011

    • Author(s)
      Yutaka Yoshida
    • Organizer
      HUPO 2011 10th World Congress
    • Place of Presentation
      Geneva, Palexepo Conference hall
    • Year and Date
      2011-09-06
    • Related Report
      2011 Annual Research Report
  • [Presentation] Verification and standardization of comparative proteomic analysis of human glomeruli prepared by laser microdissection from frozen block2011

    • Author(s)
      Yutaka Yoshida
    • Organizer
      日本プロテオーム学会2011年会サテライトシンポジウム
    • Place of Presentation
      新潟朱鷺メッセ(招待講演)
    • Year and Date
      2011-07-30
    • Related Report
      2011 Annual Research Report
  • [Presentation] 健常人尿プロテオームの特徴:AKIバイオマーカーの多項目同時測定の基礎的検討2011

    • Author(s)
      吉田豊
    • Organizer
      第54回日本腎臓学会
    • Place of Presentation
      横浜パシフィコ横浜
    • Year and Date
      2011-06-15
    • Related Report
      2011 Annual Research Report
  • [Presentation] Extensive profiling of human urine proteome: construction of SRM transitions for quantification of urinary biomarkers for acute and chronic kidney diseases2011

    • Author(s)
      Yoshida Y et al
    • Organizer
      第10回国際ヒトプロテオーム機構学術集会
    • Place of Presentation
      ジュネーブ(スイス連邦)
    • Related Report
      2012 Final Research Report
  • [Presentation] 正常ヒト尿プロテオームの特徴:AKIバイオマーカーの多項目同時測定の基礎的検討2011

    • Author(s)
      吉田豊他
    • Organizer
      日本プロテオーム学会2011年大会(第9回日本ヒトプロテオーム機構)
    • Place of Presentation
      新潟
    • Related Report
      2012 Final Research Report
  • [Presentation] On-site proteomics study on laser microdissected rat renal cortex and human glomerulus tissues2010

    • Author(s)
      Xu Bo
    • Organizer
      国際プロテオーム機構第9回国際大会
    • Place of Presentation
      シドニー
    • Year and Date
      2010-09-20
    • Related Report
      2010 Annual Research Report
  • [Presentation] Verification and standardization of comparative proteomic analysis of human glomerululi prepared by laser microdissection from frozen block2010

    • Author(s)
      Yutaka Yoshida
    • Organizer
      国際プロテオーム機構第9回国際大会
    • Place of Presentation
      シドニー
    • Year and Date
      2010-09-20
    • Related Report
      2010 Annual Research Report
  • [Presentation] High confidence proteomic profile of minute amount of human kidney glomeruli2010

    • Author(s)
      Ying Zhang
    • Organizer
      国際プロテオーム機構第9回国際大会
    • Place of Presentation
      シドニー
    • Year and Date
      2010-09-20
    • Related Report
      2010 Annual Research Report
  • [Presentation] In-depth analysis of aquaporin 8 knockout mice colon using tandem mass spectrometry2010

    • Author(s)
      Sameh Magdeldin
    • Organizer
      国際プロテオーム機構第9回国際大会
    • Place of Presentation
      シドニー
    • Year and Date
      2010-09-20
    • Related Report
      2010 Annual Research Report
  • [Presentation] Exploring resistant determinants of methicillin in Staphylococcus Aureuswith comparative proteomics approach.2010

    • Author(s)
      Shymaa Enany
    • Organizer
      国際プロテオーム機構第9回国際大会
    • Place of Presentation
      シドニー
    • Year and Date
      2010-09-20
    • Related Report
      2010 Annual Research Report
  • [Presentation] High confidence proteomic profile of minute amount of human kidney glomeruli2010

    • Author(s)
      張螢
    • Organizer
      日本プロテオーム学会2010年大会
    • Place of Presentation
      舞浜
    • Year and Date
      2010-07-26
    • Related Report
      2010 Annual Research Report
  • [Presentation] Laser microdissectionを用いた腎生検試料の糸球体プロテオーム解析2010

    • Author(s)
      吉田豊
    • Organizer
      日本プロテオーム学会2010年大会
    • Place of Presentation
      舞浜
    • Year and Date
      2010-07-26
    • Related Report
      2010 Annual Research Report
  • [Presentation] In-depth proteomic analysis of secretome of European community-Acquired methicillin-resistant Staphylococcus aureus2010

    • Author(s)
      Enany Shymaa
    • Organizer
      日本プロテオーム学会2010年大会
    • Place of Presentation
      舞浜
    • Year and Date
      2010-07-26
    • Related Report
      2010 Annual Research Report
  • [Presentation] Laser microdissectionを用いたホルマリン固定標本のon-siteプロテオーム解析2010

    • Author(s)
      許波
    • Organizer
      日本プロテオーム学会2010年大会
    • Place of Presentation
      舞浜
    • Year and Date
      2010-07-26
    • Related Report
      2010 Annual Research Report
  • [Presentation] Proteomic profiling of aquaporin 8 knockout mice reveals its involvement in alpha amylase regulation2010

    • Author(s)
      Magdaldin Sameh
    • Organizer
      日本プロテオーム学会2010年大会
    • Place of Presentation
      舞浜
    • Year and Date
      2010-07-26
    • Related Report
      2010 Annual Research Report
  • [Presentation] High confidence proteomic profile of minute amount of human kidney glomeruli2010

    • Author(s)
      張螢
    • Organizer
      第53回日本腎臓学会
    • Place of Presentation
      神戸
    • Year and Date
      2010-06-18
    • Related Report
      2010 Annual Research Report
  • [Presentation] ホルマリン固定標本とLaser microdissectionを用いたon-siteプロテオーム解析2010

    • Author(s)
      許波
    • Organizer
      第53回日本腎臓学会
    • Place of Presentation
      神戸
    • Year and Date
      2010-06-18
    • Related Report
      2010 Annual Research Report
  • [Presentation] Laser microdissectionとLC-MSを用いた腎生検試料の糸球体プロテオーム解析2010

    • Author(s)
      吉田豊
    • Organizer
      第53回日本腎臓学会
    • Place of Presentation
      神戸
    • Year and Date
      2010-06-17
    • Related Report
      2010 Annual Research Report
  • [Presentation] Proteomic analysis elucidates involvement of water channel aquaporin 8 in alpha amylase regulation2010

    • Author(s)
      Magdaldin Sameh
    • Organizer
      第53回日本腎臓学会
    • Place of Presentation
      神戸
    • Year and Date
      2010-06-17
    • Related Report
      2010 Annual Research Report
  • [Presentation] 尿中インスリン様成長因子結合蛋白(IGFBP)の意義2010

    • Author(s)
      藤中秀彦
    • Organizer
      第53回日本腎臓学会
    • Place of Presentation
      神戸
    • Year and Date
      2010-06-16
    • Related Report
      2010 Annual Research Report
  • [Presentation] Verification and standardization of comparative proteome analysis of human glomeruli prepared by laser microdissectionfrom frozen block2010

    • Author(s)
      Yoshida Y
    • Organizer
      第9回国際ヒトプロテオーム機構学術集会
    • Place of Presentation
      シドニー(オーストラリア連邦)
    • Related Report
      2012 Final Research Report
  • [Presentation] Laser microdissectionとLC-MSを用いた腎生検試料の糸球体プロテオーム解析2010

    • Author(s)
      吉田豊他
    • Organizer
      第53回日本腎臓学会学術総会
    • Place of Presentation
      神戸
    • Related Report
      2012 Final Research Report
  • [Remarks]

    • URL

      http://hkupp.kir.jp

    • Related Report
      2012 Final Research Report
  • [Remarks] Human Kidney and Urine Proteome Project

    • URL

      http://www.hkupp.org/

    • Related Report
      2012 Annual Research Report
  • [Remarks]

    • URL

      http://hkupp.kir.jp/DB.html

    • Related Report
      2011 Annual Research Report
  • [Remarks]

    • URL

      http://www.hkupp.org/

    • Related Report
      2010 Annual Research Report

URL: 

Published: 2010-08-23   Modified: 2019-07-29  

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