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Genomic analysis and identification of susceptible genes for alopecia areata

Research Project

Project/Area Number 22591229
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Dermatology
Research InstitutionJuntendo University

Principal Investigator

IKEDA Shigaku  順天堂大学, 医学部, 教授 (40193198)

Project Period (FY) 2010 – 2012
Project Status Completed (Fiscal Year 2012)
Budget Amount *help
¥4,550,000 (Direct Cost: ¥3,500,000、Indirect Cost: ¥1,050,000)
Fiscal Year 2012: ¥910,000 (Direct Cost: ¥700,000、Indirect Cost: ¥210,000)
Fiscal Year 2011: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Fiscal Year 2010: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Keywords円形脱毛症 / ゲノム解析 / マイクロサテライト / SNP / 遺伝子 / HLA / 疾患感受性遺伝子 / ゲノム相関解析 / HLA領域
Research Abstract

In this study, we have identified a strong candidate region for alopecia areata on chromosome 6, at around HLA-B locus (OR: 3.21). By detailed genetic analysis of this region using microsatellite markers and SNPs, we could successfully narrow the region to 2 megabase interval (Haida Y, Ikeda S, et al: An association study of Alopecia Areata within the HLA region using microsatellite markers. Immunogenetics, 2013; 65: 553-7.). We further sequenced this 2 megabase region on 50 alopecia areata cases, and identified a strongly associated haplotype for alopecia areata (OR: 3.75). Moreover, in this region, we have identified multiple mutations and/or polymorphisms in the exons and introns of a gene, that frequently resulted in the formation of stop codon mutations and truncation of gene products. These results indicated that this gene could be a strong susceptible gene for alopecia areata. We are now producing gene modified mice for this gene, and also examining the expression of this candidate gene on the alopecia areata patients’ skin.

Report

(4 results)
  • 2012 Annual Research Report   Final Research Report ( PDF )
  • 2011 Annual Research Report
  • 2010 Annual Research Report
  • Research Products

    (9 results)

All 2013 2011 Other

All Journal Article (8 results) (of which Peer Reviewed: 7 results) Presentation (1 results)

  • [Journal Article] Association analysis of the HLA-C gene in Japanese alopecia areata2013

    • Author(s)
      Haida Y, Ikeda S, Takagi A, Komiyama E, Mabuchi T, Ozawa A, Kulski JK, Inoko H, Oka A
    • Journal Title

      Immunogenetics

      Volume: 65 Pages: 553-7

    • Related Report
      2012 Final Research Report
  • [Journal Article] Association analysis of the HLA-C gene in Japanese alopecia2013

    • Author(s)
      Haida Y
    • Journal Title

      Immunogenetics

      Volume: in press

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A neuroendocrine antimicrobial peptide, catestatin, stimulates interleukin-8 production from human keratinocytes via activation of mitogen-activated protein kineses2011

    • Author(s)
      Aung G, Niyonsaba F, Ikeda S, Ogwa H
    • Journal Title

      J Dermatol Sci

      Volume: 61 Pages: 142-144

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Viral infection induces Thymic stromal lymphopoietin (TSLP) in human keratinocytes2011

    • Author(s)
      Kawasaki J, et al
    • Journal Title

      J Dermatol Sci

      Volume: 62 Pages: 131-134

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Elafin and secretory leukocyte protease inhibitor stimulate the production of cytekines and chemokines by human keratinocytes via MARK/ERK and NF-KB activation2011

    • Author(s)
      Aung G, Niyonsaba F, Ikeda S, Okumura K
    • Journal Title

      J Dermatol Sci

      Volume: 63 Pages: 128-131

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Barrier Dysfunction Caused by Environmental Proteases in…2011

    • Author(s)
      Takai T, Ikeda S
    • Journal Title

      Allergol Int.

      Volume: 25(Epub ahead of print)

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Catestatin, a neuroendocrine antimicrobial peptide,…2011

    • Author(s)
      Aung G, Niyonsaba F, et al
    • Journal Title

      Immunology

      Volume: Jan(Epub ahead of print)

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A neuroendocrine antimicrobial peptide, catestatin, stimulates…

    • Author(s)
      Aung G, Niyonsaba F, et al
    • Journal Title

      J Dermatol Sci

      Volume: 2010(Epub ahead of print)

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Presentation] Association analysis of the HLA-C gene in Japanese alopecia2013

    • Author(s)
      Ikeda S
    • Organizer
      7th World Congress for Hair Rsearch
    • Place of Presentation
      Edinburgh
    • Related Report
      2012 Annual Research Report

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Published: 2010-08-23   Modified: 2019-07-29  

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