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Study in chemical methylation of cytosine base

Research Project

Project/Area Number 22651076
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeSingle-year Grants
Research Field System genome science
Research InstitutionOsaka University

Principal Investigator

KODAMA Tetsuya  大阪大学, 大学院・薬学研究科, 助教 (00432443)

Project Period (FY) 2010 – 2011
Project Status Completed (Fiscal Year 2011)
Budget Amount *help
¥3,530,000 (Direct Cost: ¥3,200,000、Indirect Cost: ¥330,000)
Fiscal Year 2011: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2010: ¥2,100,000 (Direct Cost: ¥2,100,000)
Keywordsメチル化 / オリゴヌクレオチド / 複合体化 / 人工核酸 / 三重鎖形成核酸 / アルキル化
Research Abstract

Methylation of the cytosine base at C5 position was important modification concerning gene expression, cellular differentiation, virus infection and so on. Toward the development of the triplex-forming-oligonucleotide-based chemical technique that induces the methylation, a synthetic method of oligonucleotide conjugating a methylsulfonium group was established. As a result of the treatment of target DNA with a methyl sulfonium conjugating oligonucleotide, some DNA fragments derived from the methylation(alkylation) on the guanine bases were formed. It is important that triplex forming oligonucleotide conjugating an alkylating agent induced DNA alkylation, which is the first step toward the methylation of cytosine.

Report

(3 results)
  • 2011 Annual Research Report   Final Research Report ( PDF )
  • 2010 Annual Research Report
  • Research Products

    (9 results)

All 2011 2010

All Journal Article (4 results) (of which Peer Reviewed: 4 results) Presentation (4 results) Book (1 results)

  • [Journal Article] Design, synthesis and properties of boat-shaped glucopyranosyl nucleic acid2011

    • Author(s)
      Kazuto Mori, Tetsuya Kodama, Satoshi Obika
    • Journal Title

      Organic Letters

      Volume: 13 Pages: 6050-6053

    • Related Report
      2011 Annual Research Report 2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Bridged nucleic acid conjugates at 6'-thiol : synthesis, hybridization properties and nuclease resistances2011

    • Author(s)
      Kazuto Mori, Tetsuya Kodama, Takeshi Baba, Satoshi Obika
    • Journal Title

      Organic & Biomolecular Chemistry

      Volume: 9 Pages: 5272-5279

    • Related Report
      2011 Annual Research Report 2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] A novel bridged nucleoside bearing a conformationally switchable sugar moiety in response to redox changes2010

    • Author(s)
      Takeshi Baba, Tetsuya Kodama Kazuto Mori, Takeshi Imanishi, Satoshi Obika
    • Journal Title

      Chemical Communications

      Volume: 46 Pages: 8058-8060

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] A novel bridged nucleoside bearing a conformationally switchable sugar moiety in response to redox changes.2010

    • Author(s)
      Takeshi Baba, Tetsuya Kodama, 他3名
    • Journal Title

      Chem.Commun.

      Volume: 46 Pages: 8058-8060

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Presentation] A new entry of thiol-containing nucleic acid monomer for conjugation chemistry2011

    • Author(s)
      Tetsuya Kodama, Kazuto Mori, Takeshi Baba, Satoshi Obika
    • Organizer
      6th Cambridge Symposium on Nucleic Acids Chemistry and Biology
    • Place of Presentation
      Queens' College Cambridge, UK
    • Related Report
      2011 Annual Research Report 2011 Final Research Report
  • [Presentation] 架橋部位にチオール基を有する新規人工核酸の合成とコンジュゲート化への応用2010

    • Author(s)
      森和土、兒玉哲也、馬場武、小比賀聡
    • Organizer
      第60回日本薬学会近畿支部大会
    • Place of Presentation
      大阪・摂南大学
    • Year and Date
      2010-10-30
    • Related Report
      2011 Final Research Report 2010 Annual Research Report
  • [Presentation] 架橋部位にチオール基を有する新規人工核酸の合成及びその評価2010

    • Author(s)
      森和土、兒玉哲也、馬場武、小比賀聡
    • Organizer
      第20回アンチセンスシンポジウム
    • Place of Presentation
      兵庫・甲南大学
    • Related Report
      2011 Final Research Report 2010 Annual Research Report
  • [Presentation] A Novel Bridged Nucleic Acid Containing a Thiol Group in the Bridged Structure : Synthesis, Conjugation with Functional Molecules and Hybridization Properties2010

    • Author(s)
      Kazuto Mori, Tetsuya Kodama, Takeshi Baba, Satoshi Obika
    • Organizer
      The 37th International Symposium on Nucleic Acid Chemistry
    • Place of Presentation
      神奈川・はまぎんホールヴィアマーレ
    • Related Report
      2011 Final Research Report 2010 Annual Research Report
  • [Book] Therapeutic Oligonucleotides : Methods and Protocols2011

    • Author(s)
      Y.Hari, T.Kodama, T.Imanishi, S.Obika
    • Publisher
      Humana Press
    • Related Report
      2011 Annual Research Report

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Published: 2010-08-23   Modified: 2016-04-21  

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