• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

Research on the mechanism of robust manifestation of biological functions under fluctuating environment

Research Project

Project/Area Number 22654047
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeSingle-year Grants
Research Field Mathematical physics/Fundamental condensed matter physics
Research InstitutionNara Women's University

Principal Investigator

TODA Mikito  奈良女子大学, 自然科学系, 准教授 (70197896)

Co-Investigator(Kenkyū-buntansha) TAKAMI Toshiya  九州大学, 情報基盤研究開発センター, 准教授 (10270472)
FUKUMIZU Kenji  統計数理研究所, 数理推論研究系, 教授 (60311362)
Project Period (FY) 2010 – 2012
Project Status Completed (Fiscal Year 2012)
Budget Amount *help
¥3,240,000 (Direct Cost: ¥2,700,000、Indirect Cost: ¥540,000)
Fiscal Year 2012: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2011: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2010: ¥900,000 (Direct Cost: ¥900,000)
Keywordsウエーブレット / 不変集合 / 分子機能 / 生体分子 / 統計的因果推論 / 階層性 / 機能発現 / 集団運動 / カーネル法 / 不変多様体 / 分岐現象 / 時系列解析 / 天然変性タンパク質 / 動力学 / 大自由度カオス / 非線形動力学
Research Abstract

We have developed methods to extract slow collective motions using wavelet transformation, to find a low-dimensional description of these collective motions and to analyze them using invariant manifolds in the phase space. We have applied these methods to numerical data obtained by molecular dynamics simulation, and are revealing how molecular functions are related to collective motions of biomolecules.

Report

(4 results)
  • 2012 Annual Research Report   Final Research Report ( PDF )
  • 2011 Annual Research Report
  • 2010 Annual Research Report
  • Research Products

    (109 results)

All 2013 2012 2011 2010 Other

All Journal Article (32 results) (of which Peer Reviewed: 6 results) Presentation (68 results) (of which Invited: 1 results) Book (7 results) Remarks (2 results)

  • [Journal Article] 大自由度力学系の集団運動抽出に向けた問題提起-化学反応動力学の観点から-2013

    • Author(s)
      寺本央、戸田幹人、小松崎民樹
    • Journal Title

      数理研講究録

      Volume: Vol.1827 Pages: 154-170

    • URL

      http://www.kurims.kyoto-u.ac.jp/~kyodo/kokyuroku/contents/pdf/1827-15.pdf

    • Related Report
      2012 Annual Research Report 2012 Final Research Report
  • [Journal Article] Fluctuations of Healthy and Unhealthy Heartbeat Intervals2013

    • Author(s)
      Boon Leong Lan and Mikito Toda
    • Journal Title

      Europhysics Letters

      Volume: Vol.102 Issue: 1 Pages: 18002-18002

    • DOI

      10.1209/0295-5075/102/18002

    • Related Report
      2012 Annual Research Report 2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Time series analysis of molecular dynamics simulation using wavelet2012

    • Author(s)
      Mikito Toda
    • Journal Title

      PROCEEDINGS OF THE 8th International Summer School/Conference LET'S FACE CHAOS THROUGH NONLINEAR DYNAMICS

      Volume: Vol.1468 Pages: 367-374

    • DOI

      10.1063/1.4745595

    • Related Report
      2012 Annual Research Report 2012 Final Research Report
  • [Journal Article] Nanosecond simulations of the dynamics of C60 excited by intense near-IR laser pulses: Impulsive Raman excitation, rearrangement, and fragmentation2012

    • Author(s)
      Naoyuki Niitsu, Miyu Kikuchi, Hayato Ikeda, Kaoru Yamazaki, Manabu Kanno, Hirohiko Kono, Koichiro Mitsuke, Mikito Toda, and Katsunori Nakai
    • Journal Title

      Journal of Chemical Physics

      Volume: Vol.136 Issue: 16 Pages: 164304-164304

    • DOI

      10.1063/1.4704896

    • Related Report
      2012 Annual Research Report 2012 Final Research Report 2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Parareal Acceleration of Matrix Multiplication2012

    • Author(s)
      Toshiya Takami and Akira Nishida
    • Journal Title

      Advances in Parallel Computing

      Volume: Vol. 22 Pages: 437-444

    • Related Report
      2012 Final Research Report
  • [Journal Article] Gradient-based kernel method for feature extraction and variable selection.2012

    • Author(s)
      K. Fukumizu, C. Leng
    • Journal Title

      Advances in Neural Information Processing Systems 25 (NIPS2012)

      Pages: 2123-2131

    • URL

      http://www.ism.ac.jp/~fukumizu/research.html

    • Related Report
      2012 Final Research Report
  • [Journal Article] Learning from Distributions via Support Measure Machines.2012

    • Author(s)
      K. Muandet, K. Fukumizu, F. Dinuzzo, B. Schoelkopf
    • Journal Title

      Advances in Neural Information Processing Systems 25 (NIPS2012)

      Pages: 10-18

    • URL

      http://www.ism.ac.jp/~fukumizu/research.html

    • Related Report
      2012 Final Research Report
  • [Journal Article] Optimal kernel choice for large-scale two-sample tests.2012

    • Author(s)
      A. Gretton, B. Sriperumbudur, D. Sejdinovic, H. Strathmann, S. Balakrishnan, M. Pontil, K. Fukumizu
    • Journal Title

      Advances in Neural Information Processing Systems 25 (NIPS2012)

      Pages: 1214-1222

    • URL

      http://www.ism.ac.jp/~fukumizu/research.html

    • Related Report
      2012 Final Research Report
  • [Journal Article] On the empirical estimation of integral probability metrics.2012

    • Author(s)
      B. Sriperumbudur, K. Fukumizu, A. Gretton, B. Schoelkopf, G. Lanckriet
    • Journal Title

      Electronic Journal of Statistics 6

      Pages: 1550-1599

    • URL

      http://www.ism.ac.jp/~fukumizu/research.html

    • Related Report
      2012 Final Research Report
  • [Journal Article] 複雑量子系の最適制御理論2012

    • Author(s)
      高見利也, 藤崎弘士
    • Journal Title

      日本医科大学紀要

      Volume: 第41号 Pages: 1-24

    • NAID

      40019471128

    • Related Report
      2012 Final Research Report
  • [Journal Article] Analysis of motion features for molecular dynamics simulation of proteins2011

    • Author(s)
      M. Kamada, M. Toda, M. Sekijima, M. Takada and K. Joe
    • Journal Title

      Chem. Phys. Lett

      Volume: Vol. 502 Issue: 4-6 Pages: 241-247

    • DOI

      10.1016/j.cplett.2010.12.028

    • Related Report
      2012 Final Research Report 2011 Annual Research Report
  • [Journal Article] Dynamical Switching of a Reaction Coordinate to Carry the System through to a Different Product State at High Energies2011

    • Author(s)
      H.Teramoto, M.Toda, T.Komatsuzaki
    • Journal Title

      Physical Reveiw Letters

      Volume: 106 Issue: 5 Pages: 54101-54101

    • DOI

      10.1103/physrevlett.106.054101

    • NAID

      120002834723

    • Related Report
      2012 Final Research Report 2011 Annual Research Report 2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Asymptotic analysis of singular values of rectangular complex matrices in the Laguerre and fixed-trace ensembles2011

    • Author(s)
      S.Adachi, M.Toda, H.Kubotani
    • Journal Title

      Journal of Physics A : Math.Theor.

      Volume: 44 Issue: 29 Pages: 292002-292002

    • DOI

      10.1088/1751-8113/44/29/292002

    • Related Report
      2012 Final Research Report 2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Non-Brownian Phase Space Dynamics of Molecules, the Nature of their Vibrational States, and non-RRKM Kinetics2011

    • Author(s)
      D. M. Leitner, Y. Matsunaga, A.Shojiguchi, C-B. Li, T. Komatsuzaki, and M. Toda
    • Journal Title

      Adv. Chem. Phys.

      Volume: Vol.145 Pages: 83-122

    • DOI

      10.1002/9781118087817.ch3

    • Related Report
      2012 Final Research Report
  • [Journal Article] Dynamical Reaction Theory based on Geometric Structures in Phase Space2011

    • Author(s)
      S. Kawai, H. Teramoto, C-B. Li, T. Komatsuzaki and M. Toda
    • Journal Title

      Adv. Chem. Phys.

      Volume: Vol.145 Pages: 123-169

    • DOI

      10.1002/9781118087817.ch4

    • Related Report
      2012 Final Research Report
  • [Journal Article] Ergodic Problems for Real Complex Systems in Chemical Physics2011

    • Author(s)
      T. Komatsuzaki, A. Baba, S. Kawai, M. Toda, J. E. Straub, and R. S. Berry
    • Journal Title

      Adv. Chem. Phys.

      Volume: Vol.145 Pages: 171-220

    • DOI

      10.1002/9781118087817.ch5

    • Related Report
      2012 Final Research Report
  • [Journal Article] Statistical approaches to combining binary classifiers for multi-class classification2011

    • Author(s)
      Yuichi Shiraishi, Kenji Fukumizu
    • Journal Title

      Neurocomputing

      Volume: 74(5) Pages: 680-688

    • URL

      http://www.ism.ac.jp/~fukumizu/research.html

    • Related Report
      2012 Final Research Report
  • [Journal Article] Universality, Characteristic Kernels and RKHS Embedding of Measures2011

    • Author(s)
      Bharath K. Sriperumbudur, Kenji Fukumizu, Gert R.G. Lanckriet
    • Journal Title

      Journal of Machine Learning Research

      Pages: 2389-2410

    • URL

      http://www.ism.ac.jp/~fukumizu/research.html

    • Related Report
      2012 Final Research Report
  • [Journal Article] 連成・連携計算によるデータ量削減の評価2011

    • Author(s)
      押川雄大, 小林泰三, 森江善之, 高見利也, 青柳睦
    • Journal Title

      情報処理学会研究報告

      Volume: 2011-HPC-132(4)

    • NAID

      110008713474

    • Related Report
      2012 Final Research Report
  • [Journal Article] 時間方向並列化の線形計算への適用可能性2011

    • Author(s)
      高見利也, 西田晃
    • Journal Title

      情報処理学会研究報告

      Volume: 2011-HPC-131(6) Pages: 1-8

    • NAID

      110008620837

    • Related Report
      2012 Final Research Report
  • [Journal Article] ヘテロジニアスな並列計算環境を応用した連成・連係計算の提案2011

    • Author(s)
      押川雄大, 小林泰三, 森江善之, 高見利也, 青柳睦
    • Journal Title

      情報処理学会研究報告

      Volume: 2011-HPC-130(20) Pages: 1-7

    • NAID

      110008583376

    • Related Report
      2012 Final Research Report
  • [Journal Article] 一次データを保存しない大規模科学計算の可能性2011

    • Author(s)
      高見利也, 戸田幹人, 福水健次
    • Journal Title

      情報処理学会研究報告

      Volume: 2011-HPC-129(3) Pages: 1-8

    • Related Report
      2012 Final Research Report
  • [Journal Article] New graph polynomials from the Bethe approximation of the Ising partition function Combinatorics2011

    • Author(s)
      Y. Watanabe and K. Fukumizu
    • Journal Title

      Probability and Computing. Published online

    • URL

      http://www.ism.ac.jp/~fukumizu/research.html.

    • Related Report
      2012 Final Research Report
  • [Journal Article] Hilbert Space Embeddings and Metrics on Probability Measures.2011

    • Author(s)
      Bharath K. Sriperumbudur, Arthur Gretton, Kenji Fukumizu, Bernhard Scholkopf, Gert R.G. Lanckriet
    • Journal Title

      Journal of Machine Learning Research

      Volume: 11(Apr) Pages: 1517-1561

    • URL

      http://www.ism.ac.jp/~fukumizu/research.html

    • Related Report
      2012 Final Research Report
  • [Journal Article] Analysis of motion features for molecular dynamics simulation of proteins2011

    • Author(s)
      M.Kamada, M.Toda, M.Sekijima, M.Takada, K.Joe
    • Journal Title

      Chemical Physics Letters

      Volume: 502 Pages: 241-247

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A Fast, Consistent Kernel Two-Sample Test2010

    • Author(s)
      A.Gretton, Z. Harchaoui, K. Fukumizu, B. Sriperumbudur
    • Journal Title

      Advances in Neural Information Processing Systems 22

      Volume: (MIT Press) Pages: 673-681

    • URL

      http://www.ism.ac.jp/~fukumizu/research.html

    • Related Report
      2012 Final Research Report
  • [Journal Article] Graph Zeta Function in the Bethe Free Energy and Loopy Belief Propagation.2010

    • Author(s)
      Y.Watanabe and K.Fukumizu
    • Journal Title

      Advances in Neural Information Processing Systems 22

      Volume: (MIT Press) Pages: 2017-2025

    • URL

      http://www.ism.ac.jp/~fukumizu/research.html

    • Related Report
      2012 Final Research Report
  • [Journal Article] Hilbert Space Embeddings and Metrics on Probability Measures2010

    • Author(s)
      B.K.Sriperumbudur, A.Gretton, K.Fukumizu, B.Scholkopf, G.R.G.Lanckriet
    • Journal Title

      Journal of Machine Learning Research

      Volume: 11 Pages: 1517-1561

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Measuring dynamical randomness of quantum chaos by statistics of Schmidt eigenvalues

    • Author(s)
      H. Kubotani, S.Adachi and M. Toda
    • Journal Title

      Physical Review E

      Volume: (accepted and to be published)

    • Related Report
      2012 Final Research Report
  • [Journal Article] Learning in Hilbert vs. Banach Spaces: A Measure Embedding Viewpoint.

    • Author(s)
      B. Sriperumbudur, K. Fukumizu, G. Lanckriet
    • Journal Title

      Advances in Neural Information Processing Systems 24 (NIPS2011)

    • URL

      http://www.ism.ac.jp/~fukumizu/research.html

    • Related Report
      2012 Final Research Report
  • [Journal Article] Kernel Bayes' Rule

    • Author(s)
      K. Fukumizu, L. Song, A. Gretton
    • Journal Title

      Advances in Neural Information Processing Systems 24 (NIPS2011)

    • URL

      http://www.ism.ac.jp/~fukumizu/research.html

    • Related Report
      2012 Final Research Report
  • [Journal Article] Kernel Choice and Classifiability for RKHS Embeddings of Probability Distributions.

    • Author(s)
      B. Sriperumbudur, K. Fukumizu, A. Gretton, G. Lanckriet and B. Scholkopf.
    • Journal Title

      Advances in Neural Information Processing Systems 22

      Volume: (MIT Press) Pages: 1750-1758

    • URL

      http://www.ism.ac.jp/~fukumizu/research.html

    • Related Report
      2012 Final Research Report
  • [Presentation] 生体分子の分子動力学時系列データに対する統計解析42013

    • Author(s)
      戸田幹人,高見利也,福水健次,菊地浩人,藤崎弘士
    • Organizer
      日本物理学会年会
    • Place of Presentation
      広島大学
    • Year and Date
      2013-03-29
    • Related Report
      2012 Final Research Report
  • [Presentation] シグナル伝達に関与するPDZドメインの分子動力学データに対する時系列解析2013

    • Author(s)
      岸田直子,藤崎弘士,戸田幹人
    • Organizer
      日本物理学会年会
    • Place of Presentation
      広島大学
    • Year and Date
      2013-03-29
    • Related Report
      2012 Final Research Report
  • [Presentation] 大域結合振動子系における遷移現象V2013

    • Author(s)
      甲谷里奈,郡宏,佐藤譲,島伸一郎,戸田幹人
    • Organizer
      日本物理学会年会
    • Place of Presentation
      広島大学
    • Year and Date
      2013-03-27
    • Related Report
      2012 Final Research Report
  • [Presentation] 生体分子の分子動力学に対する時系列解析-集団運動の揺らぎと構造変化の関係を探る-III2013

    • Author(s)
      冨士香奈,関嶋政和,藤崎弘士,戸田幹人
    • Organizer
      日本物理学会年会
    • Place of Presentation
      広島大学
    • Year and Date
      2013-03-27
    • Related Report
      2012 Final Research Report
  • [Presentation] 法双曲的不変多様体崩壊の量子的兆候2013

    • Author(s)
      寺本央,戸田幹人,小松崎民樹
    • Organizer
      日本物理学会年会
    • Place of Presentation
      広島大学
    • Year and Date
      2013-03-26
    • Related Report
      2012 Final Research Report
  • [Presentation] Stationary Lagrangian Coherent Structure による化学反応動力学の理解2013

    • Author(s)
      寺本 央・戸田 幹人・小松崎 民樹
    • Organizer
      日本化学会第93 春季年会
    • Place of Presentation
      立命館大学
    • Year and Date
      2013-03-23
    • Related Report
      2012 Final Research Report
  • [Presentation] Time-series analysis for protein dynamics using discrete wavelet transform with kernel canonical correlation analysis2012

    • Author(s)
      Mayumi Kamada, Mikito Toda, Tatsuya Akutsu
    • Organizer
      Biophysical Society of Japan
    • Place of Presentation
      Nagoya Univ
    • Year and Date
      2012-09-22
    • Related Report
      2012 Final Research Report
  • [Presentation] The time series analysis of molecular dynamics data about PDZ domain in synapse2012

    • Author(s)
      Naoko Kishida, Hiroshi Fujisaki, Mikito Toda
    • Organizer
      Biophysical Society of Japan
    • Place of Presentation
      Nagoya Univ
    • Year and Date
      2012-09-22
    • Related Report
      2012 Final Research Report
  • [Presentation] Time-series analysis of molecular dynamics: Conformational change and dynamics of collective behavior2012

    • Author(s)
      Kana Fuji, Masakazu Sekijima, Hiroshi Fujisaki, Mikito Toda
    • Organizer
      Biophysical Society of Japan
    • Place of Presentation
      Nagoya Univ
    • Year and Date
      2012-09-22
    • Related Report
      2012 Final Research Report
  • [Presentation] シナプス結合に関与するPDZ ドメインの分子動力学データに対する時系列解析2012

    • Author(s)
      岸田直子,藤崎弘士,戸田幹人
    • Organizer
      日本物理学会秋期大会
    • Place of Presentation
      横浜国大
    • Year and Date
      2012-09-21
    • Related Report
      2012 Final Research Report
  • [Presentation] 生体分子の分子動力学に対する時系列解析-集団運動の揺らぎと構造変化の関係を探る-II2012

    • Author(s)
      冨士香奈,関嶋政和,藤崎弘士,戸田幹人
    • Organizer
      日本物理学会秋期大会
    • Place of Presentation
      横浜国大
    • Year and Date
      2012-09-20
    • Related Report
      2012 Final Research Report
  • [Presentation] 分子の階層モデルによる量子ダイナミクス32012

    • Author(s)
      藤崎弘士,菊地浩人,戸田幹人,高見利也
    • Organizer
      日本物理学会秋期大会
    • Place of Presentation
      横浜国大
    • Year and Date
      2012-09-20
    • Related Report
      2012 Final Research Report
  • [Presentation] 生体分子の分子動力学時系列データに対する統計解析32012

    • Author(s)
      戸田幹人,高見利也,福水健次,菊地浩人,藤崎弘士
    • Organizer
      日本物理学会秋期大会
    • Place of Presentation
      横浜国大
    • Year and Date
      2012-09-20
    • Related Report
      2012 Final Research Report
  • [Presentation] 大域結合振動子系における遷移現象III2012

    • Author(s)
      甲谷里奈,郡宏,佐藤譲,島伸一郎,戸田幹人
    • Organizer
      日本物理学会秋期大会
    • Place of Presentation
      横浜国大
    • Year and Date
      2012-09-20
    • Related Report
      2012 Final Research Report
  • [Presentation] Collective vs individual motions of biomolecules2012

    • Author(s)
      Mikito Toda
    • Organizer
      International Workshop : Physics of information information in physics, and the demon
    • Place of Presentation
      Institute of Molecular Science , Okazaki, Japan
    • Year and Date
      2012-06-29
    • Related Report
      2012 Final Research Report
  • [Presentation] 分子階層モデルを使った量子ダイナミクスII2012

    • Author(s)
      藤崎弘士,菊地浩人,戸田幹人,高見利也
    • Organizer
      日本物理学会年会
    • Place of Presentation
      関西学院大学
    • Year and Date
      2012-03-26
    • Related Report
      2012 Final Research Report 2011 Annual Research Report
  • [Presentation] 大域結合振動子系における遷移現象II2012

    • Author(s)
      甲谷里奈,郡宏,佐藤譲,島伸一郎,戸田幹人
    • Organizer
      日本物理学会年会
    • Place of Presentation
      関西学院大学
    • Year and Date
      2012-03-25
    • Related Report
      2012 Final Research Report
  • [Presentation] 大域結合振動子系における遷移現象II2012

    • Author(s)
      甲谷里奈, 郡宏, 佐藤譲, 島伸一郎, 戸田幹人
    • Organizer
      日本物理学会年会
    • Place of Presentation
      関西学院大学(ポスター)
    • Year and Date
      2012-03-25
    • Related Report
      2011 Annual Research Report
  • [Presentation] 生体分子の分子動力学時系列データに対する統計解析22012

    • Author(s)
      戸田幹人,高見利也,福水健次,菊地浩人,藤崎弘士
    • Organizer
      日本物理学会年会
    • Place of Presentation
      関西学院大学
    • Year and Date
      2012-03-24
    • Related Report
      2012 Final Research Report 2011 Annual Research Report
  • [Presentation] 局所スペクトルを用いた大自由度力学系の解析2012

    • Author(s)
      寺本央,戸田幹人,小松崎民樹
    • Organizer
      日本物理学会年会
    • Place of Presentation
      関西学院大学
    • Year and Date
      2012-03-24
    • Related Report
      2012 Final Research Report 2011 Annual Research Report
  • [Presentation] カオス系の最適制御問題における量子古典対応22012

    • Author(s)
      高見利也,藤崎弘士
    • Organizer
      日本物理学会年会
    • Place of Presentation
      関西学院大学
    • Year and Date
      2012-03-24
    • Related Report
      2012 Final Research Report
  • [Presentation] 生体分子の分子動力学に対する時系列解析-集団運動の揺らぎと構造変化の関係を探る-2012

    • Author(s)
      冨士香奈,関嶋政和,藤崎弘士,戸田幹人
    • Organizer
      日本物理学会年会
    • Place of Presentation
      関西学院大学
    • Year and Date
      2012-03-24
    • Related Report
      2012 Final Research Report 2011 Annual Research Report
  • [Presentation] Fractional behavior in chemical reaction processes involving complex systems2012

    • Author(s)
      M.Toda
    • Organizer
      International Workshop on Anomalous Statistics, Generalized Entropies, and Information Geometry
    • Place of Presentation
      Nara, Japan(Invited Talk)
    • Year and Date
      2012-03-07
    • Related Report
      2011 Annual Research Report
  • [Presentation] Fractional behavior in chemical reaction processes involving complex systems2012

    • Author(s)
      M. Toda
    • Organizer
      International Workshop on Anomalous Statistics, Generalized Entropies, and Information Geometry
    • Place of Presentation
      Nara, Japan
    • Related Report
      2012 Final Research Report
  • [Presentation] 分子動力学の時系列データ解析-生体分子の複雑な動きとその意味-2011

    • Author(s)
      富士香奈、関嶋政和、戸田幹人
    • Organizer
      日本物理学会秋季大会
    • Place of Presentation
      富山大学
    • Year and Date
      2011-09-24
    • Related Report
      2012 Final Research Report
  • [Presentation] 分子動力学の時系列データ解析-生体分子の複雑な動きとその意味-2011

    • Author(s)
      富士香奈、関嶋政和、戸田幹人
    • Organizer
      日本物理学会秋季大会
    • Place of Presentation
      富山大学(ポスター)
    • Year and Date
      2011-09-24
    • Related Report
      2011 Annual Research Report
  • [Presentation] 大域結合位相振動子系における遷移現象について2011

    • Author(s)
      甲谷里奈, 郡宏, 佐藤譲, 島伸一郎, 戸田幹人
    • Organizer
      日本物理学会秋季大会
    • Place of Presentation
      富山大学(ポスター)
    • Year and Date
      2011-09-24
    • Related Report
      2011 Annual Research Report
  • [Presentation] 生体分子の分子動力学時系列データに対する統計解析2011

    • Author(s)
      戸田幹人,高見利也,福水健次,菊地浩人,藤崎弘士
    • Organizer
      日本物理学会秋季大会
    • Place of Presentation
      富山大学
    • Year and Date
      2011-09-23
    • Related Report
      2012 Final Research Report 2011 Annual Research Report
  • [Presentation] カオス系の最適制御問題における量子古典対応2011

    • Author(s)
      高見利也,藤崎弘士
    • Organizer
      日本物理学会秋季大会
    • Place of Presentation
      富山大学
    • Year and Date
      2011-09-23
    • Related Report
      2012 Final Research Report
  • [Presentation] 法双曲不変多様体崩壊の量子力学的兆候2011

    • Author(s)
      寺本央、戸田幹人、小松崎民樹
    • Organizer
      日本物理学会秋季大会
    • Place of Presentation
      富山大学
    • Year and Date
      2011-09-22
    • Related Report
      2012 Final Research Report 2011 Annual Research Report
  • [Presentation] 大域結合位相振動子系における遷移現象について2011

    • Author(s)
      甲谷里奈,郡宏,佐藤譲,島伸一郎,戸田幹人
    • Organizer
      日本物理学会秋季大会
    • Place of Presentation
      富山大学
    • Year and Date
      2011-09-22
    • Related Report
      2012 Final Research Report
  • [Presentation] 遅いダイナミクスにより生成される表面パターン2011

    • Author(s)
      高見利也,下川倫子,藤崎弘士,小林泰三
    • Organizer
      日本物理学会秋季大会
    • Place of Presentation
      富山大学
    • Year and Date
      2011-09-22
    • Related Report
      2012 Final Research Report
  • [Presentation] 分子階層モデルを使った生体分子の量子ダイナミクス2011

    • Author(s)
      藤崎弘士,菊地浩人,戸田幹人,高見利也
    • Organizer
      日本物理学会秋季大会
    • Place of Presentation
      富山大学
    • Year and Date
      2011-09-21
    • Related Report
      2012 Final Research Report 2011 Annual Research Report
  • [Presentation] Time-series analysis of molecular dynamics : Conformational change and movement of the side chain2011

    • Author(s)
      K. Fuji, M. Sekijima and M. Toda
    • Organizer
      第49回日本生物物理学会年会
    • Place of Presentation
      兵庫県立大学
    • Year and Date
      2011-09-18
    • Related Report
      2012 Final Research Report
  • [Presentation] Exploring feature extraction method for time series data obtained by molecular dynamics simulation2011

    • Author(s)
      M. Kamada, M. Toda, M. Hayashida, A. Robertazzi, E. W. Knapp and T. Akutsu
    • Organizer
      第49回日本生物物理学会年会
    • Place of Presentation
      兵庫県立大学
    • Year and Date
      2011-09-18
    • Related Report
      2012 Final Research Report 2011 Annual Research Report
  • [Presentation] Time-series analysis of molecular dynamics : Conformational change and movement of the side chain2011

    • Author(s)
      K.Fuji, M.Sekijima, M.Toda
    • Organizer
      第49回日本生物物理学会年会
    • Place of Presentation
      兵庫県立大学(英語口頭)
    • Year and Date
      2011-09-18
    • Related Report
      2011 Annual Research Report
  • [Presentation] Coffee Patterns Generated by Slow Dynamics2011

    • Author(s)
      Toshiya Takami, Michiko Shimokawa, Hiroshi Fujisaki, and Taizo Kobayashi
    • Organizer
      Dynamics Days Europe
    • Place of Presentation
      poster presentation. Oldenburg, Germany.
    • Year and Date
      2011-09-15
    • Related Report
      2012 Final Research Report
  • [Presentation] Parareal Acceleration of Matrix Multiplication2011

    • Author(s)
      Toshiya Takami and Akira Nishida
    • Organizer
      ParCo2011
    • Place of Presentation
      oral presentation. Ghent, Belgium.
    • Year and Date
      2011-09-01
    • Related Report
      2012 Final Research Report
  • [Presentation] Time series analysis using wavelet for molecular dynamics simulation of proteins2011

    • Author(s)
      M. Toda
    • Organizer
      8th International Summer School/Conference LET'S FACE CHAOS THROUGH NONLINEAR DYNAMICS
    • Place of Presentation
      Maribor, Slovenia
    • Year and Date
      2011-07-09
    • Related Report
      2012 Final Research Report
  • [Presentation] Time series analysis using wavelet for molecular dynamics on of proteins2011

    • Author(s)
      M.Toda
    • Organizer
      8th International Summer School/Conference LET'S FACE CHAOS THROUGH NONLINEAR DYNAMICS
    • Place of Presentation
      Maribor, Slovenia(Invited talk)
    • Year and Date
      2011-07-09
    • Related Report
      2011 Annual Research Report
  • [Presentation] Time series analysis of molecular dynamics simulation : Collective behavior and configuration changes2011

    • Author(s)
      K. Fuji and M. Toda
    • Organizer
      8th International Summer School/Conference LET'S FACE CHAOS THROUGH NONLINEAR DYNAMICS,Maribor
    • Place of Presentation
      Maribor, Slovenia
    • Year and Date
      2011-06-26
    • Related Report
      2012 Final Research Report
  • [Presentation] 分子動力学データに対する統計解析2011

    • Author(s)
      戸田幹人, 高見利也, 福水健次
    • Organizer
      日本物理学会
    • Place of Presentation
      新潟大学
    • Year and Date
      2011-03-28
    • Related Report
      2010 Annual Research Report
  • [Presentation] 分子動力学に関する構造変化と運動変化2011

    • Author(s)
      富士香奈, 戸田幹人, 関嶋政和
    • Organizer
      日本物理学会2011 年年会ポスター発表
    • Related Report
      2012 Final Research Report
  • [Presentation] 分子動力学データに対する統計解析2011

    • Author(s)
      戸田幹人, 高見利也, 福水健次
    • Organizer
      日本物理学会2011 年ポスター発表
    • Related Report
      2012 Final Research Report
  • [Presentation] Quantum energy transfer for biomolecules2011

    • Author(s)
      H. Fujisaki, H. Kikuchi and M. Toda
    • Organizer
      日本物理学会2011 年口頭発表
    • Related Report
      2012 Final Research Report
  • [Presentation] 多準位量子状態の最適制御と半古典極限2011

    • Author(s)
      高見利也,藤崎弘士
    • Organizer
      日本物理学会2011 年口頭発表
    • Related Report
      2012 Final Research Report
  • [Presentation] 法双曲的不変多様体の崩壊と生成:局所から大域へ2011

    • Author(s)
      寺本 央,戸田幹人, 小松崎民樹
    • Organizer
      日本物理学会2011 年口頭発表
    • Related Report
      2012 Final Research Report
  • [Presentation] 大自由度系の集団運動:生体分子の分子動力学計算を例として2011

    • Author(s)
      戸田幹人
    • Organizer
      研究集会Dynamics in Complex Systems
    • Place of Presentation
      北大
    • Related Report
      2012 Final Research Report
  • [Presentation] 分子動力学データに対する統計解析システムの構築と応用2011

    • Author(s)
      高見利也,戸田幹人,福水健次
    • Organizer
      2011 年ハイパフォーマンスコンピューティングと計算科学シンポジウム(HPCS2011)
    • Place of Presentation
      産業技術総合研究所
    • Related Report
      2012 Final Research Report
  • [Presentation] Time series analysis of molecular dynamics simulation : Collective behavior and configuration changes2011

    • Author(s)
      K.Fuji, M.Toda
    • Organizer
      8th International Summer School/Conference LET'S FACE CHAOS THROUGH NONLINEAR DYNAMICS
    • Place of Presentation
      Maribor, Slovenia(poster)
    • Related Report
      2011 Annual Research Report
  • [Presentation] Phase Space Structures for Systems of Large Degrees of Freedom2010

    • Author(s)
      M. Toda
    • Organizer
      Slovenia-Japan Seminar on Nonlinear Science (Kansai,2010)
    • Place of Presentation
      Osaka Prefecture University
    • Related Report
      2012 Final Research Report
  • [Presentation] Time Series Analysis Using Wavelet for Molecular Dynamics Simulation of Proteins : A case for chignolin, the first designed Protein2010

    • Author(s)
      K. Fuji , M. Toda and M. Sekijima
    • Organizer
      Slovenia-Japan Seminar on Nonlinear Science (Kansai,2010)
    • Place of Presentation
      Osaka Prefecture University
    • Related Report
      2012 Final Research Report
  • [Presentation] Time Series Analysis using Wavelet toward Molecular Dynamics Simulation of Proteins2010

    • Author(s)
      M. Toda
    • Organizer
      The 13th Slovenia-Japan Seminar on Nonlinear Science and Waseda AICS symposium on nonlinear and nonequilibrium phenomena in complex systems
    • Place of Presentation
      Waseda University
    • Related Report
      2012 Final Research Report
  • [Presentation] 生体分子の分子動力学時系列データに対する統計解析4

    • Author(s)
      戸田幹人,高見利也,福水健次,菊地浩人,藤崎弘士
    • Organizer
      日本物理学会年会
    • Place of Presentation
      広島大学
    • Related Report
      2012 Annual Research Report
  • [Presentation] シグナル伝達に関与するPDZドメインの分子動力学データに対する時系列解析

    • Author(s)
      岸田直子,藤崎弘士,戸田幹人
    • Organizer
      日本物理学会年会
    • Place of Presentation
      広島大学
    • Related Report
      2012 Annual Research Report
  • [Presentation] 大域結合振動子系における遷移現象V

    • Author(s)
      甲谷里奈,郡宏,佐藤譲,島伸一郎,戸田幹人
    • Organizer
      日本物理学会年会
    • Place of Presentation
      広島大学
    • Related Report
      2012 Annual Research Report
  • [Presentation] 生体分子の分子動力学に対する時系列解析─集団運動の揺らぎと構造変化の関係を探る─III

    • Author(s)
      冨士香奈,関嶋政和,藤崎弘士,戸田幹人
    • Organizer
      日本物理学会年会
    • Place of Presentation
      広島大学
    • Related Report
      2012 Annual Research Report
  • [Presentation] 法双曲的不変多様体崩壊の量子的兆候

    • Author(s)
      寺本央,戸田幹人,小松崎民樹
    • Organizer
      日本物理学会年会
    • Place of Presentation
      広島大学
    • Related Report
      2012 Annual Research Report
  • [Presentation] Stationary Lagrangian Coherent Structureによる化学反応動力学の理解

    • Author(s)
      寺本央,戸田幹人,小松崎民樹
    • Organizer
      日本化学会第93春季年会
    • Place of Presentation
      立命館大学
    • Related Report
      2012 Annual Research Report
  • [Presentation] Time-series analysis for protein dynamics using discrete wavelet transform with kernel canonical correlation analysis

    • Author(s)
      Mayumi Kamada, Mikito Toda, Tatsuya Akutsu
    • Organizer
      Biophysical Society of Japan
    • Place of Presentation
      名古屋大学
    • Related Report
      2012 Annual Research Report
  • [Presentation] The time series analysis of molecular dynamics data about PDZ domain in synapse

    • Author(s)
      Naoko Kishida, Hiroshi Fujisaki, Mikito Toda
    • Organizer
      Biophysical Society of Japan
    • Place of Presentation
      名古屋大学
    • Related Report
      2012 Annual Research Report
  • [Presentation] Time-series analysis of molecular dynamics: Conformational change and dynamics of collective behavior

    • Author(s)
      Kana Fuji, Masakazu Sekijima, Hiroshi Fujisaki, Mikito Toda
    • Organizer
      Biophysical Society of Japan
    • Place of Presentation
      名古屋大学
    • Related Report
      2012 Annual Research Report
  • [Presentation] シナプス結合に関与するPDZドメインの分子動力学データに対する時系列解析

    • Author(s)
      岸田直子,藤崎弘士,戸田幹人
    • Organizer
      日本物理学会秋期大会
    • Place of Presentation
      横浜国立大学
    • Related Report
      2012 Annual Research Report
  • [Presentation] 生体分子の分子動力学に対する時系列解析-集団運動の揺らぎと構造変化の関係を探る-II

    • Author(s)
      冨士香奈,関嶋政和,藤崎弘士,戸田幹人
    • Organizer
      日本物理学会秋期大会
    • Place of Presentation
      横浜国立大学
    • Related Report
      2012 Annual Research Report
  • [Presentation] 分子の階層モデルによる量子ダイナミクス3

    • Author(s)
      藤崎弘士,菊地浩人,戸田幹人,高見利也
    • Organizer
      日本物理学会秋期大会
    • Place of Presentation
      横浜国立大学
    • Related Report
      2012 Annual Research Report
  • [Presentation] 生体分子の分子動力学時系列データに対する統計解析3

    • Author(s)
      戸田幹人,高見利也,福水健次,菊地浩人,藤崎弘士
    • Organizer
      日本物理学会秋期大会
    • Place of Presentation
      横浜国立大学
    • Related Report
      2012 Annual Research Report
  • [Presentation] 大域結合振動子系における遷移現象III

    • Author(s)
      甲谷里奈,郡宏,佐藤譲,島伸一郎,戸田幹人
    • Organizer
      日本物理学会秋期大会
    • Place of Presentation
      横浜国立大学
    • Related Report
      2012 Annual Research Report
  • [Presentation] Collective vs individual motions of biomolecules

    • Author(s)
      Mikito Toda
    • Organizer
      International Workshop : Physics of information, information in physics, and the demon
    • Place of Presentation
      Institute of Molecular Science
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Book] 力学系理論による化学反応論の理解と発展2013

    • Author(s)
      寺本央,戸田幹人,小松崎民樹
    • Total Pages
      31
    • Publisher
      高等研より出版予定
    • Related Report
      2012 Annual Research Report
  • [Book] Non-Brownian Phase Space Dynamics of Molecules, the Nature of their Vibrational States, and non-RRKM Kinetics Adv.Chem.Phys., Vol.1452011

    • Author(s)
      D.M.Leitner, Y.Matsunaga, A.Shojiguchi, C-B.Li, T.Komatsuzaki, M.Toda
    • Publisher
      John Willey
    • Related Report
      2011 Annual Research Report
  • [Book] Dynamical Reaction Theory based on Geometric Structures in Phase Space, Adv.Chem.Phys., Vol.1452011

    • Author(s)
      S.Kawai, H.Teramoto, C-B.Li, T.Komatsuzaki, M.Toda
    • Publisher
      John Willey
    • Related Report
      2011 Annual Research Report
  • [Book] Ergodic Problems for Real Complex Systems in Chemical Physics, Adv.Chem.Phys., Vol.1452011

    • Author(s)
      A.Baba, S.Kawai, M.Toda, J.E.Straub, R.S.Berry
    • Publisher
      John Willey
    • Related Report
      2011 Annual Research Report
  • [Book] カーネル法入門2010

    • Author(s)
      福水健次
    • Total Pages
      236
    • Publisher
      朝倉書店
    • Related Report
      2012 Final Research Report
  • [Book] カーネル法入門--正定値カーネルによるデータ解析--2010

    • Author(s)
      福水健次
    • Total Pages
      236
    • Publisher
      朝倉書店
    • Related Report
      2010 Annual Research Report
  • [Book] 力学系理論による化学反応論の理解と発展

    • Author(s)
      寺本央,戸田幹人,小松崎民樹, 高橋陽一郎編集
    • Publisher
      高等研より出版予定
    • Related Report
      2012 Final Research Report
  • [Remarks]

    • URL

      http://minnie.disney.phys.nara-wu.ac.jp/~toda/index_j.html

    • Related Report
      2012 Final Research Report
  • [Remarks] chaos and nonlinear science

    • URL

      http://minnie.disney.phys.nara-wu.ac.jp/~toda/index_j.html

    • Related Report
      2012 Annual Research Report

URL: 

Published: 2010-11-30   Modified: 2019-07-29  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi