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Reaction Control of Nanoreactor by Utilizing DNA Hybridization

Research Project

Project/Area Number 22656179
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeSingle-year Grants
Research Field Properties in chemical engineering process/Transfer operation/Unit operation
Research InstitutionKyushu University

Principal Investigator

GOTO Masahiro  九州大学, 工学研究院, 教授教授 (10211921)

Project Period (FY) 2010 – 2011
Project Status Completed (Fiscal Year 2011)
Budget Amount *help
¥3,590,000 (Direct Cost: ¥3,200,000、Indirect Cost: ¥390,000)
Fiscal Year 2011: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Fiscal Year 2010: ¥1,900,000 (Direct Cost: ¥1,900,000)
Keywordsベシクル / ナノレアクター / 分子集合体 / ハイブリダイゼーション / DNA / ナノリアクター / 分子認識 / タンパク質連結 / トロンビン / 相補鎖 / 配列認識 / 酵素反応 / リポソーム / バイオセンサー
Research Abstract

We investigated DNA-directed aggregation of vesicles using DNA-surfactants. Following tethering of single-stranded DNA oligonucleotides to vesicles using DNA-surfactant, the tethered vesicles were assembled with other vesicles bearing complementary strands. The vesicle aggregation was strongly affected by the salt concentration and by temperature according to the characteristics of DNA hybridization. Restriction enzyme, which can hydrolyze the double-stranded DNA used in the present study, dissociated the vesicle aggregates. Exploration using fluorescently labeled vesicles suggested that the DNA-directed vesicle aggregation took place in a sequence-specific manner through DNA-duplex formation. Interestingly, the DNA-directed aggregation using short DNA-surfactant induced the fusion of vesicles to produce giant vesicles, resulting in an enzymatic reaction in the giant vesicle.

Report

(3 results)
  • 2011 Annual Research Report   Final Research Report ( PDF )
  • 2010 Annual Research Report
  • Research Products

    (24 results)

All 2012 2011 2010 2009 Other

All Journal Article (14 results) (of which Peer Reviewed: 13 results) Presentation (9 results) Remarks (1 results)

  • [Journal Article] Intestinal patches with an immobilized solid-in-oil formulation for oral protein delivery2012

    • Author(s)
      E. Toorisaka, K. Watanabe, H. Ono, M. Hirata, N. Kamiya, M. Goto
    • Journal Title

      Acta Biomaterialia

      Volume: 8 Pages: 653-658

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Short time ionic liquids pretreatment on lignocellulosic biomass to enhance enzymatic saccharification2012

    • Author(s)
      Uju, Y. Shoda, A. Nakamoto, M. Goto, W. Tokuhara, Y. Noritake, S. Katahira, N. Ishida, K. Nakashima, C. Ogino, N. Kamiya
    • Journal Title

      Bioresour. Technol

      Volume: 103 Pages: 446-452

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Microplate assay for aptamer-based thrombin detection using a DNA-enzyme conjugate based on His-tag chemistry2012

    • Author(s)
      J. Shimada, T. Maruyama, M. Kitaoka, N. Kamiya, M. Goto
    • Journal Title

      Anal. Biochem

      Volume: 421 Pages: 541-546

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Programmable protein-protein conjugation via DNA-based self-assembly2012

    • Author(s)
      J. Shimada, T. Maruyama, M. Kitaoka, H. Yoshinaga, K. Nakano, N. Kamiya, M. Goto
    • Journal Title

      Chem. Commun., Accepted

    • NAID

      120006318790

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Microplate assay for aptamer-based thrombin detection using a DNA-enzyme coniueate based on histidine-tag chemistry2012

    • Author(s)
      J.Shimada, et.al.
    • Journal Title

      Analytical Biochemistry

      Volume: 421 Issue: 2 Pages: 541-546

    • DOI

      10.1016/j.ab.2011.11.028

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Programmable protein-protein conjugation via DNA-based self-assembly2012

    • Author(s)
      J.Shimada, et.al.
    • Journal Title

      Chemical Communications

      Volume: (in press) Issue: 50 Pages: 6226-6226

    • DOI

      10.1039/c2cc30618b

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] "Site-Specific Protein Cross-Linking by Peroxidase-Catalyzed Activation of a Tyrosine-Containing Peptide Tag2011

    • Author(s)
      K. Minamihata, M. Goto, N. Kamiya
    • Journal Title

      Bioconjugate Chem

      Volume: 22 Pages: 74-81

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] DNA-enzyme conjugate with a weak inhibitor that can specifically detect thrombin in a homogeneous medium2011

    • Author(s)
      J. Shimada, T. Maruyama, M. Kitaoka, N. Kamiya, M. Goto
    • Journal Title

      Anal. Biochem

      Volume: 414 Pages: 103-108

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] New strategy to enhance catalytic performance of Escherichia coli whole cell biocatalysts harboring P450cam mutants2011

    • Author(s)
      T.Mouri, N.Kamiya, M.Goto
    • Journal Title

      Biochemical Enbineering Journal

      Volume: 53 Issue: 2 Pages: 229-233

    • DOI

      10.1016/j.bej.2010.09.016

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Ionic Liquid Based Microemulsion with Pharmaceutically Accepted Components2010

    • Author(s)
      M. Moniruzzaman, N. Kamiya, M. Goto
    • Journal Title

      Formulation and Potential Applications, Journal of Colloid & Interface Science

      Volume: 352 Pages: 136-142

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Recent advances of enzymatic reactions in ionic liquids2010

    • Author(s)
      M.Moniruzzaman, K.Nakashima, N.Kamiya, M.Goto
    • Journal Title

      Biochem.Eng.J.

      Volume: 48 Pages: 295-314

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Activation and stabilization of enzymes in ionic liquids2010

    • Author(s)
      M.Moniruzzaman, N.Kamiya, M.Goto
    • Journal Title

      Org.Biomol.Chem.

      Volume: 8 Pages: 2887-2899

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 生体分子の反応場としてのイオン液体2010

    • Author(s)
      後藤雅宏
    • Journal Title

      現代化学

      Volume: 474 Pages: 35-39

    • Related Report
      2010 Annual Research Report
  • [Journal Article] Surface modification of a solid-state cellulose matrix with lactose by a surfactant-enveloped enzyme in a nonaqueous medium2009

    • Author(s)
      S. Egusa, S. Yokota, K. Tanaka, K. Esaki, Y. Okutani, Y. Ogawa, T. Kitaoka, M. Goto, H. Wariishi
    • Journal Title

      J. Mater. Chem

      Volume: 19 Pages: 1836-1842

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Presentation] チロシルラジカルの電荷指向型カップリング反応によるタンパク質架橋2012

    • Author(s)
      南畑孝介、神谷典穂、後藤雅宏
    • Organizer
      化学工学会第77年次大会
    • Place of Presentation
      工学院大学(東京)
    • Year and Date
      2012-03-16
    • Related Report
      2011 Annual Research Report
  • [Presentation] Molecular Assembly in Ionic Liquids as a Novel Reaction Medium for Biocatalysisi Reactions2012

    • Author(s)
      Masahiro GOTO
    • Organizer
      14^<th> Asia-Pacific Confederation of Chemical engineering
    • Place of Presentation
      Singapore(招待講演)
    • Year and Date
      2012-02-23
    • Related Report
      2011 Annual Research Report
  • [Presentation] 翻訳後修飾酵素を利用した部位特異的タンパク質脂質修飾技術の開発2011

    • Author(s)
      安倍弘喜, 神谷典穂、後藤雅宏
    • Organizer
      第18回生物工学会九州支部福岡大会
    • Place of Presentation
      九州大学(福岡)
    • Year and Date
      2011-12-10
    • Related Report
      2011 Annual Research Report
  • [Presentation] 合成DNAをテンプレートとしたタンパク質の複合・連結化プロセスの開発2011

    • Author(s)
      嶋田如水、丸山達生、神谷典穂、後藤雅宏
    • Organizer
      化学工学会第43回秋季大会
    • Place of Presentation
      名古屋工業大学(名古屋)
    • Year and Date
      2011-09-15
    • Related Report
      2011 Annual Research Report
  • [Presentation] トランスグルタミナーゼの新規機能性基質の探索2011

    • Author(s)
      安倍弘喜、後藤雅宏、神谷典穂
    • Organizer
      化学工学会第76年会
    • Place of Presentation
      東京農工大学
    • Related Report
      2011 Final Research Report
  • [Presentation] チロシン酸化反応を用いた異種タンパク質架橋体の酵素合成2011

    • Author(s)
      南畑孝介、後藤雅宏、神谷典穂
    • Organizer
      化学工学会第76年会
    • Place of Presentation
      東京農工大学
    • Related Report
      2011 Final Research Report
  • [Presentation] Sequence Selective Separation of DNA by Nanostructured Molecular Assembly2010

    • Author(s)
      Masahiro GOTO
    • Organizer
      AIChE Annual Meeting
    • Place of Presentation
      ソルトレイク国際会議場
    • Year and Date
      2010-11-04
    • Related Report
      2010 Annual Research Report
  • [Presentation] 部位特異的・共有結合的タンパク質マルチラベル化技術の開発2010

    • Author(s)
      安倍弘喜、神谷典穂、後藤雅宏
    • Organizer
      化学工学会第75年会
    • Place of Presentation
      鹿児島
    • Related Report
      2011 Final Research Report
  • [Presentation] DNAを利用したタンパク質の連結化方法2010

    • Author(s)
      嶋田如水、丸山達生、神谷典穂、後藤雅宏
    • Organizer
      化学工学会第42回秋季大会
    • Place of Presentation
      京都
    • Related Report
      2011 Final Research Report
  • [Remarks] ホームページ

    • URL

      http://www.bioeng.cstm.kyushu-u.ac.jp/

    • Related Report
      2011 Final Research Report

URL: 

Published: 2010-08-23   Modified: 2016-04-21  

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