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Analysis on cell filament formation and phenotypic plasticity of Escherichia coli using micro fluid system : rapid adaptation

Research Project

Project/Area Number 22657006
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeSingle-year Grants
Research Field Ecology/Environment
Research InstitutionThe University of Tokyo

Principal Investigator

SHIMADA Masakazu  東京大学, 大学院・総合文化研究科, 教授 (40178950)

Co-Investigator(Renkei-kenkyūsha) YOSHIDA Takehito  東京大学, 大学院・総合文化研究科, 准教授 (40447321)
WKAMOTO Yuichi  東京大学, 大学院・総合文化研究科, 准教授 (30517884)
Project Period (FY) 2010 – 2011
Project Status Completed (Fiscal Year 2011)
Budget Amount *help
¥3,240,000 (Direct Cost: ¥3,000,000、Indirect Cost: ¥240,000)
Fiscal Year 2011: ¥1,040,000 (Direct Cost: ¥800,000、Indirect Cost: ¥240,000)
Fiscal Year 2010: ¥2,200,000 (Direct Cost: ¥2,200,000)
Keywords1細胞培養計測系 / マイクロ流路 / 大腸菌 / 細胞伸長 / 表現型可塑性 / 捕食回避説 / 低密度良好説 / 環境ストレス説 / フィラメント形成 / 細菌の進化生態学 / 天敵の効果 / 栄養条件
Research Abstract

Using the on-chip one cell micro fluid system, we analyzed three potential factors affecting the cell filament formation of Escherichia coli ;(1) the enemy avoidance hypothesis,(2) the cell performance enhanced at a low density, and(3) the environmental stress. Either one factor or their combinations has/have been analyzed. First of all, we developed the device, so that too many growing cells can be automatically removed from the incubating area(Patent 2011-156767). Applying the device to the Tetrahymena-E. coli co-incubation system, we observed that the cell filament of E. coli forms when we used for two standard mediums for Tetrahymena(1/10PYG and CDM), even though we did not add Tetrahymena's pheromones at all.

Report

(3 results)
  • 2011 Annual Research Report   Final Research Report ( PDF )
  • 2010 Annual Research Report
  • Research Products

    (18 results)

All 2012 2011 Other

All Journal Article (3 results) (of which Peer Reviewed: 2 results) Presentation (9 results) Remarks (3 results) Patent(Industrial Property Rights) (3 results)

  • [Journal Article] Optimal lineageprinciple for age-structured populations2012

    • Author(s)
      Wakamoto, Y., Grosberg, A. Y.,Kussell, E.
    • Journal Title

      Evolution

      Volume: 66(1) Issue: 1 Pages: 115-134

    • DOI

      10.1111/j.1558-5646.2011.01418.x

    • Related Report
      2011 Annual Research Report 2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] 確率的表現型変化によるがん細胞構成比の安定性2011

    • Author(s)
      若本祐一
    • Journal Title

      実験医学

      Volume: 29 Pages: 2980-2981

    • Related Report
      2011 Annual Research Report 2011 Final Research Report
  • [Journal Article] Multitude of morphologicaldynamics of giant multilamellar vesicles in regulated nonequilibriumenvironments2011

    • Author(s)
      Tomita, T., Sugawara, T., Wakamoto,Y.
    • Journal Title

      Langmuir

      Volume: 27(16) Issue: 16 Pages: 10106-10112

    • DOI

      10.1021/la2018456

    • Related Report
      2011 Annual Research Report 2011 Final Research Report 2010 Annual Research Report
    • Peer Reviewed
  • [Presentation] Bacterial persistence based on epigenetically correlated stochastic gene expression2012

    • Author(s)
      Wakamoto, Y
    • Organizer
      第85回日本細菌学会総会
    • Place of Presentation
      長崎ブリックホール
    • Year and Date
      2012-03-28
    • Related Report
      2011 Final Research Report
  • [Presentation] rial persistence based on epigenetically correlated stochastic gene expre2012

    • Author(s)
      Wakamoto, Y.
    • Organizer
      第85回日本細菌学会総会
    • Place of Presentation
      長崎(招待講演)
    • Year and Date
      2012-03-28
    • Related Report
      2011 Annual Research Report
  • [Presentation] Natural selection based on stochastic gene expression and generality of phenotypic adaptation2011

    • Author(s)
      Wakamoto, Y
    • Organizer
      第34回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜
    • Year and Date
      2011-12-15
    • Related Report
      2011 Final Research Report
  • [Presentation] lection based on stochastic gene expression and generality of phenotypic2011

    • Author(s)
      Wakamoto, Y.
    • Organizer
      第34回日本分子生物学会年会
    • Place of Presentation
      横浜(招待講演)
    • Year and Date
      2011-12-15
    • Related Report
      2011 Annual Research Report
  • [Presentation] Bacterial persistence based on epigenetically correlated gene expression2011

    • Author(s)
      Wakamoto, Y
    • Organizer
      5th International Conference on Analysis of Microbial Cells at the Single Cell Level
    • Place of Presentation
      Carry-Le-Rouet(France)
    • Year and Date
      2011-11-06
    • Related Report
      2011 Final Research Report
  • [Presentation] Bacterial persistence based on epigenetically correlated gene expression2011

    • Author(s)
      Wakamoto, Y.
    • Organizer
      5th International Conference on Analysis of Microbial Cells at the Single Cell Level
    • Place of Presentation
      Carry-Le-Rouet, France
    • Year and Date
      2011-11-06
    • Related Report
      2011 Annual Research Report
  • [Presentation] Single-cell measurement toolbox for studying evolution of restriction-modification systems2011

    • Author(s)
      Wakamoto, Y
    • Organizer
      The 11th HFSP Awardees Meeting
    • Place of Presentation
      Montreal(Canada)
    • Year and Date
      2011-06-06
    • Related Report
      2011 Final Research Report
  • [Presentation] ell measurement toolbox for studying evolution of restriction-modificatio2011

    • Author(s)
      Wakamoto, Y.
    • Organizer
      The 11th HFSP Awardees Meeting
    • Place of Presentation
      Montreal, Canada
    • Year and Date
      2011-06-06
    • Related Report
      2011 Annual Research Report
  • [Presentation] Single-cell measurement toolbox for studying evolution of restriction-modification systems2011

    • Author(s)
      Wakamoto, Y.
    • Organizer
      The 11th HFSP Awardees Meeting
    • Place of Presentation
      Montreal, Canada(招待講演)
    • Year and Date
      2011-06-06
    • Related Report
      2010 Annual Research Report
  • [Remarks]

    • URL

      http://park.itc.u-tokyo.ac.jp/shimada-lab/index.html

    • Related Report
      2011 Final Research Report
  • [Remarks]

    • URL

      http://park.itc.u-tokyo.ac.jp/shimada-lab/

    • Related Report
      2011 Annual Research Report
  • [Remarks]

    • URL

      http://park.itc.u-tokyo.ac.jp/shimada-lab/

    • Related Report
      2010 Annual Research Report
  • [Patent(Industrial Property Rights)] 細胞培養装置、細胞培養方法、および細胞培養観察方法2011

    • Inventor(s)
      若本祐一、橋本幹弘
    • Industrial Property Rights Holder
      科学技術振興機構(100%)
    • Industrial Property Number
      2011-156767
    • Filing Date
      2011-07-15
    • Related Report
      2011 Final Research Report
  • [Patent(Industrial Property Rights)] 細胞培養装置、細胞培養方法、および細胞培養観察方2011

    • Inventor(s)
      若本祐一、橋本幹弘
    • Industrial Property Rights Holder
      科学技術振興機構(100%)
    • Industrial Property Number
      2011-156767
    • Filing Date
      2011-07-15
    • Related Report
      2011 Annual Research Report
  • [Patent(Industrial Property Rights)] 細胞培養装置、細胞培養方法、お2011

    • Inventor(s)
      若本祐一、橋本
    • Industrial Property Rights Holder
      科学技術振興
    • Industrial Property Number
      2011-156767
    • Filing Date
      2011-07-15
    • Related Report
      2010 Annual Research Report

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Published: 2010-08-23   Modified: 2016-04-21  

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