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Construction of cell differentiation model by bacterial cells

Research Project

Project/Area Number 22657059
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeSingle-year Grants
Research Field Evolutionary biology
Research InstitutionOsaka University

Principal Investigator

YING Beiwen  大阪大学, 大学院・情報科学研究科, 特任准教授(常勤) (90422401)

Project Period (FY) 2010 – 2011
Project Status Completed (Fiscal Year 2011)
Budget Amount *help
¥3,430,000 (Direct Cost: ¥3,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2011: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2010: ¥2,000,000 (Direct Cost: ¥2,000,000)
Keywords発生 / 分化 / 進化 / 発現制御 / 大腸菌 / 遺伝子 / 細胞間相互作用 / 微生物
Research Abstract

Cell differentiation is a process of stochasticity in phenotypic differentiation but shows the high homeostasis at the population level, i. e., the composition of varied differentiated cell types. A mutually inhibitory genetic circuit was designed and integrated into the E. coli genome. Also, the requirements for the amino acids(leucine and isoleucine) were introduced into the genetic circuit. The E. coli cells carrying this genetic circuit were used to mimic the cell differentiation successfully, based on the cell-to-cell communication.

Report

(3 results)
  • 2011 Annual Research Report   Final Research Report ( PDF )
  • 2010 Annual Research Report
  • Research Products

    (24 results)

All 2012 2011 2010 Other

All Journal Article (8 results) (of which Peer Reviewed: 4 results) Presentation (10 results) Book (4 results) Remarks (2 results)

  • [Journal Article] Bacterial cells carrying synthetic dual-function operon survived starvation2011

    • Author(s)
      Y Matsumoto, Y Ito, S Tsuru, BW Ying & T Yomo
    • Journal Title

      J Biomed Biotechnol

    • Related Report
      2011 Final Research Report
  • [Journal Article] Bacterial cells carrying synthetic dual-function operon survived starvation2011

    • Author(s)
      Matsumoto, et al
    • Journal Title

      J Biomed Biotechnol

      Volume: Vol.2011 e489265 Issue: 1 Pages: 1-10

    • DOI

      10.1155/2011/489265

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Stochastic switching induced adaptation in a starved Escherichia coli population2011

    • Author(s)
      Shimizu, et al
    • Journal Title

      PLoS ONE

      Volume: Vol.6 No.9e23953 Issue: 9 Pages: e23953-e23953

    • DOI

      10.1371/journal.pone.0023953

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Adaptation by stochastic switching of a monostable genetic circuit in Escherichia coli2011

    • Author(s)
      Tsuru, et al
    • Journal Title

      Mol Syst Biol

      Volume: Vol.7 e493 Issue: 1 Pages: 493-493

    • DOI

      10.1038/msb.2011.24

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Refined method for the genomic integration of complex synthetic circuits.2010

    • Author(s)
      B.W.Ying, et al
    • Journal Title

      Journal of Bioscience and Bioengineering

      Volume: 110(5) Pages: 529-536

    • NAID

      110007988801

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Stochastic switching induced adaptation in a starved Escherichia coli population

    • Author(s)
      Y Shimizu, S Tsuru, Y Ito, BW Ying & T Yomo
    • Journal Title

      PLoS ONE

      Volume: 6

    • Related Report
      2011 Final Research Report
  • [Journal Article] Adaptation by stochastic switching of a monostable genetic circuit in Escherichia coli

    • Author(s)
      S Tsuru, N Yasuda, Y Murakami, J Ushioda, A Kashiwagi, S Suzuki, K Mori, BW Ying & T Yomo
    • Journal Title

      Mol Syst Biol

      Volume: 7

    • Related Report
      2011 Final Research Report
  • [Journal Article] Refined method for the genomic integration of complex synthetic circuits

    • Author(s)
      BW Ying, Y Ito, Y Shimizu & T Yomo
    • Journal Title

      J Biosci Bioeng

      Volume: 110 Pages: 529-536

    • NAID

      110007988801

    • Related Report
      2011 Final Research Report
  • [Presentation] Synthetic proto-operons for stochastic adaptation2011

    • Author(s)
      BW Ying, S Tsuru & T Yomo
    • Organizer
      The 17th International Biophysics Conference
    • Place of Presentation
      Beijing, China
    • Year and Date
      2011-11-03
    • Related Report
      2011 Final Research Report
  • [Presentation] Synthetic proto-operons for stochastic adaptation.2011

    • Author(s)
      Ying, et al
    • Organizer
      17th International Biophysics Conference
    • Place of Presentation
      Beijing, China
    • Year and Date
      2011-11-03
    • Related Report
      2011 Annual Research Report
  • [Presentation] Adaptive response of rewired Escherichia coli strains in response to starvation2011

    • Author(s)
      Y Murakami, S Tsuru, BW Ying & T Yomo
    • Organizer
      International Symposium on Synthesizing life and biological systems
    • Place of Presentation
      Osaka, Japan
    • Related Report
      2011 Annual Research Report 2011 Final Research Report
  • [Presentation] Stochastic adaptation mediated by synthetic proto-operons2011

    • Author(s)
      BW Ying, S Tsuru & T Yomo
    • Organizer
      Bioinspired Materials and Functionalities
    • Place of Presentation
      Groningen, The Netherlands
    • Related Report
      2011 Annual Research Report 2011 Final Research Report
  • [Presentation] Flexible Gene Expression to Starvation out of Native Regulatory Mechanisms2010

    • Author(s)
      S.Tsuru, B.W.Ying
    • Organizer
      ICSB2010
    • Place of Presentation
      イギリス
    • Year and Date
      2010-10-12
    • Related Report
      2010 Annual Research Report
  • [Presentation] Flexible Gene Expression to Starvation out of Native Regulatory Mechanisms2010

    • Author(s)
      S Tsuru, N Yasuda, BW Ying, A Kashiwagi & T Yomo
    • Organizer
      The 11th International Conference on Systems Biology
    • Place of Presentation
      Edinburgh, UK
    • Year and Date
      2010-10-11
    • Related Report
      2011 Final Research Report
  • [Presentation] Synthetic toggle switch for selective gene expression in bacteria2010

    • Author(s)
      Y Matsumoto, Y Ito, BW Ying & T Yomo
    • Organizer
      IBIO2010
    • Place of Presentation
      Dalian, China
    • Year and Date
      2010-07-27
    • Related Report
      2011 Final Research Report
  • [Presentation] Synthetic Toggle Switch for Selective Gene Expression in Bacteria2010

    • Author(s)
      Y.Matsumoto, B.W.Ying
    • Organizer
      IBIO2010
    • Place of Presentation
      中国
    • Year and Date
      2010-07-27
    • Related Report
      2010 Annual Research Report
  • [Presentation] Biological Noise Induced Gene Production in Bacteria-a Universal Principle in the Adaptive Response to Starvation2010

    • Author(s)
      BW Ying, S Tsuru, Y Matsumoto, Y Shimizu, Y Ito & T Yomo
    • Organizer
      IBIO2010
    • Place of Presentation
      Dalian, China
    • Year and Date
      2010-07-25
    • Related Report
      2011 Final Research Report
  • [Presentation] Biological Noise Induced Gene Production in Bacteria2010

    • Author(s)
      B.W.Ying
    • Organizer
      IBIO2010
    • Place of Presentation
      中国
    • Year and Date
      2010-07-25
    • Related Report
      2010 Annual Research Report
  • [Book] Built-in synthetic gene circuits in Escherichia coli-methodology and applications. Advances in Applied Biotechnology I(ed. M Petre)2012

    • Author(s)
      BW Ying & T Yomo
    • Publisher
      InTech, Rijeka
    • Related Report
      2011 Final Research Report
  • [Book] Method in Molecular Biology (Synthetic Biology)(分担)2012

    • Author(s)
      Ying, et al
    • Publisher
      Springer(未定)
    • Related Report
      2011 Annual Research Report
  • [Book] Advances in Applied Biotechnology I(分担)2012

    • Author(s)
      Ying, et al
    • Total Pages
      276
    • Publisher
      InTech, Rijeka
    • Related Report
      2011 Annual Research Report
  • [Book] Construction of synthetic gene circuits in the Escherichia coli genome. Methods in Molecular Biology(eds. K Polizzi & C Kontoravdi)

    • Author(s)
      BW Ying, Y Akeno & T Yomo(in press)
    • Publisher
      Springer
    • Related Report
      2011 Final Research Report
  • [Remarks] 應.文、津留三良、四方哲也(2011)細胞の個性による運命の決定細胞工学30 : 1078-1083.総説

    • Related Report
      2011 Final Research Report
  • [Remarks] 津留三良、應.文、四方哲也(2010)遺伝子発現ゆらぎの解析と応用実験医学28 : 7-11.総説

    • Related Report
      2011 Final Research Report

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Published: 2010-08-23   Modified: 2016-04-21  

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