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Molecular phylogeny using multiple nuclear gene sequences

Research Project

Project/Area Number 22657060
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeSingle-year Grants
Research Field Evolutionary biology
Research InstitutionNagoya City University

Principal Investigator

KUMAZAWA Yoshinori  名古屋市立大学, 大学院・システム自然科学研究科, 教授 (60221941)

Research Collaborator KURISAKI Masaki  名古屋市立大学, 大学院・システム自然科学研究科, 博士
Project Period (FY) 2010 – 2011
Project Status Completed (Fiscal Year 2011)
Budget Amount *help
¥3,390,000 (Direct Cost: ¥3,000,000、Indirect Cost: ¥390,000)
Fiscal Year 2011: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Fiscal Year 2010: ¥1,700,000 (Direct Cost: ¥1,700,000)
Keywords分子系統 / 次世代シーケンサー / 爬虫類 / ヘビ類 / 核ゲノム / cDNA / 次世代シーケンサ
Research Abstract

We conducted high-throughput analyses using 4 squamate species and determined cDNA sequences of many highly expressed genes in the liver. Using the Blast analyses, we assessed the similarity of the cDNA representation between species, as well as the occurrence of paralogy for the highly expressed genes. Tree analyses suggested the phylogenetic position of snakes.

Report

(3 results)
  • 2011 Annual Research Report   Final Research Report ( PDF )
  • 2010 Annual Research Report
  • Research Products

    (29 results)

All 2012 2011 2010 Other

All Journal Article (7 results) (of which Peer Reviewed: 6 results) Presentation (15 results) Book (4 results) Remarks (3 results)

  • [Journal Article] Characterization of squamate olfactory receptor genes and their transcripts by the high-throughput sequencing approach2012

    • Author(s)
      Dehara Y, Hashiguchi Y, Matsubara K, Yanai T, Kubo M and Kumazawa Y
    • Journal Title

      Genome Biology and Evolution

      Volume: 4(4) Issue: 4 Pages: 602-616

    • DOI

      10.1093/gbe/evs041

    • Related Report
      2011 Annual Research Report 2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Mitochondrial DNA variability within Uromastyx ornata philbyi(Agamidae : Squamata) from southwestern Saudi Arabia2012

    • Author(s)
      Amer SAM, Mohamed MA, Wilms TM, Shobrak M and Kumazawa Y
    • Journal Title

      Comparative and Functional Genomics

      Volume: 2012 Pages: 851379-851379

    • DOI

      10.1155/2012/851379

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Mitochondrial genomes of two African geckos of genus Hemitheconyx (Squamata : Eublepharidae)2012

    • Author(s)
      Jonniaux P, Hashiguchi Y, Kumazawa Y
    • Journal Title

      Mitochondrial DNA

      Volume: (印刷中)

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Preliminary molecular variability within Uromastyx aegyptia microlepis (Reptilia : Agamidae) inhabiting Saudi Arabia2011

    • Author(s)
      Amer SAM, Montaser MM, Kumazawa Y
    • Journal Title

      World Applied Sciences Journal

      Volume: 12 Pages: 1955-1961

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Mitochondrial genomes of acrodont lizards : timing of gene rearrangements and phylogenetic and biogeographic implications2010

    • Author(s)
      Okajima Y and Kumazawa Y
    • Journal Title

      BMC Evolutionary Biology

      Volume: 10 Issue: 1 Pages: 141-141

    • DOI

      10.1186/1471-2148-10-141

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Mitochondrial genomes of acrodont lizards : timing of gene rearrangements and phylogenetic and biogeographic implications.2010

    • Author(s)
      Okajima, Y., Kumazawa, Y.
    • Journal Title

      BMC Evolutionary Biology

      Volume: 10 Pages: 141-141

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 進化学のすすめ2010

    • Author(s)
      熊澤慶伯
    • Journal Title

      Annual Review 2009. Graduate School of Natural Sciences, Nagoya City University

      Volume: 14 Pages: 35-43

    • NAID

      120006682500

    • Related Report
      2010 Annual Research Report
  • [Presentation] 有鱗目におけるトランスクリプトームプロファイル:核遺伝子を用いた系統解析を目指して2011

    • Author(s)
      栗崎政希、松原和純、鳥羽通久、熊澤慶伯
    • Organizer
      日本進化学会第13回大会
    • Place of Presentation
      京都大学(京都市)
    • Year and Date
      2011-08-30
    • Related Report
      2011 Annual Research Report 2011 Final Research Report
  • [Presentation] 次世代シーケンシングによる新規ミトコンドリアゲノム配列決定の効率性と正確性2011

    • Author(s)
      熊澤慶伯
    • Organizer
      日本進化学会第13回大会
    • Place of Presentation
      京都大学(京都市)
    • Year and Date
      2011-08-30
    • Related Report
      2011 Annual Research Report 2011 Final Research Report
  • [Presentation] ヤモリ類の系統関係とミトコンドリアゲノムの遺伝子配置の変動2011

    • Author(s)
      熊澤慶伯、三浦沙綾、ピエールジョニオ、山田知江美、橋口康之
    • Organizer
      日本進化学会第13回大会
    • Place of Presentation
      京都大学(京都市)
    • Year and Date
      2011-08-30
    • Related Report
      2011 Annual Research Report
  • [Presentation] カメ類のミトコンドリアゲノムにおける分子進化速度の不均一性2011

    • Author(s)
      山田知江美、柴田弘紀、熊澤慶伯
    • Organizer
      日本進化学会第13回大会
    • Place of Presentation
      京都大学(京都市)
    • Year and Date
      2011-08-30
    • Related Report
      2011 Annual Research Report
  • [Presentation] W染色体反復配列の比較染色体マッピングと性染色体連鎖遺伝子の系統解析から推定されたヘビにおける性染色体の分化過程2010

    • Author(s)
      松原和純、鳥羽通久、山田和彦、西田千鶴子、松田洋一、熊澤慶伯
    • Organizer
      第61回染色体学会年会
    • Place of Presentation
      東邦大学(船橋市)
    • Year and Date
      2010-11-07
    • Related Report
      2010 Annual Research Report
  • [Presentation] ヘビ亜目における性染色体の分化過程2010

    • Author(s)
      松原和純、鳥羽通久、樽井寛、山田和彦、西田千鶴子、阿形清和、松田洋一、熊澤慶伯
    • Organizer
      日本遺伝学会第82回大会
    • Place of Presentation
      北海道大学(札幌市)
    • Year and Date
      2010-09-22
    • Related Report
      2010 Annual Research Report
  • [Presentation] 中-新生代の大陸移動と爬虫類の進化2010

    • Author(s)
      熊澤慶伯
    • Organizer
      日本進化学会第12回大会「大陸移動と動物の進化2億年」シンポジウム
    • Place of Presentation
      東京工業大学(東京都)
    • Year and Date
      2010-08-05
    • Related Report
      2011 Final Research Report
  • [Presentation] 中-新生代の大陸移動と爬虫類の進化2010

    • Author(s)
      熊澤慶伯
    • Organizer
      日本進化学会第12回大会・シンポジウム「大陸移動と動物の進化2億年」
    • Place of Presentation
      東京工業大学大岡山キャンパス(東京都)
    • Year and Date
      2010-08-05
    • Related Report
      2010 Annual Research Report
  • [Presentation] cDNAマッピングとGC3含量にもとづくヘビゲノムにおけるモザイク構造の推定2010

    • Author(s)
      松原和純、工樂樹洋、樽井寛、西村理、西田千鶴子、阿形清和、松田洋一、熊澤慶伯
    • Organizer
      日本進化学会第12回大会
    • Place of Presentation
      東京工業大学大岡山キャンパス(東京都)
    • Year and Date
      2010-08-05
    • Related Report
      2010 Annual Research Report
  • [Presentation] 小笠原固有種ネブトクワガタはどこから来たか?2010

    • Author(s)
      松浦宏典、川添和英、熊澤慶伯
    • Organizer
      日本進化学会第12回大会
    • Place of Presentation
      東京工業大学大岡山キャンパス(東京都)
    • Year and Date
      2010-08-04
    • Related Report
      2010 Annual Research Report
  • [Presentation] A phylogeographic analysis of the air sac catfishes of the Heteropneustes fossilis species complex (Heteropneustidae : Siluriformes)2010

    • Author(s)
      Ratmuangkhwang S., Musikasinthorn P., Kumazawa Y.
    • Organizer
      The International Symposium on Biodiversity Sciences 2010 "Genome, Evolution and Environment"
    • Place of Presentation
      ルブラ王山ホテル(名古屋市)
    • Year and Date
      2010-08-02
    • Related Report
      2010 Annual Research Report
  • [Presentation] Molecular phylogeny and biogeography of lizards2010

    • Author(s)
      Kumazawa Y and Okajima Y
    • Organizer
      The International Symposium on Biodiversity Sciences 2010 "Genome, Evolution and Environment"
    • Place of Presentation
      ルブラ王山ホテル(名古屋市)
    • Year and Date
      2010-08-01
    • Related Report
      2011 Final Research Report
  • [Presentation] Molecular phylogeny and biogeography of lizards.2010

    • Author(s)
      Kumazawa Y., Okajima Y.
    • Organizer
      The International Symposium on Biodiversity Sciences 2010"Genome, Evolution and Environment"
    • Place of Presentation
      ルブラ王山ホテル(名古屋市)
    • Year and Date
      2010-08-01
    • Related Report
      2010 Annual Research Report
  • [Presentation] Sex chromosome evolution in snakes2010

    • Author(s)
      Matsubara K., Toriba M., Tarui, H.Yamada K., Nishida C., Agata K., Matsuda Y., Kumazawa Y.
    • Organizer
      The International Symposium on Biodiversity Sciences 2010 "Genome, Evolution and Environment"
    • Place of Presentation
      ルブラ王山ホテル(名古屋市)
    • Year and Date
      2010-08-01
    • Related Report
      2010 Annual Research Report
  • [Presentation] DNA barcode of the Japanese click beetles (Coleoptera : Elateridae)2010

    • Author(s)
      Oba Y., Ohira H., Moriyama A., Kumazawa Y.
    • Organizer
      The International Symposium on Biodiversity Sciences 2010 "Genome, Evolution and Environment"
    • Place of Presentation
      ルブラ王山ホテル(名古屋市)
    • Year and Date
      2010-08-01
    • Related Report
      2010 Annual Research Report
  • [Book] 第2版古生物学事典、日本古生物学会編2010

    • Author(s)
      熊澤慶伯
    • Publisher
      朝倉書店
    • Related Report
      2011 Final Research Report
  • [Book] 第1版生物の事典2010

    • Author(s)
      熊澤慶伯、石原勝敏・末光隆
    • Publisher
      朝倉書店
    • Related Report
      2011 Final Research Report
  • [Book] 古生物学事典 第2版2010

    • Author(s)
      熊澤慶伯
    • Publisher
      朝倉書店
    • Related Report
      2010 Annual Research Report
  • [Book] 生物の事典2010

    • Author(s)
      熊澤慶伯
    • Publisher
      朝倉書店
    • Related Report
      2010 Annual Research Report
  • [Remarks]

    • Related Report
      2011 Final Research Report
  • [Remarks]

    • URL

      http://www.nsc.nagoya-cu.ac.jp/~kuma/index.html

    • Related Report
      2011 Annual Research Report
  • [Remarks]

    • URL

      http://www.nsc.nagoya-cu.ac.jp/~kuma/index.html

    • Related Report
      2010 Annual Research Report

URL: 

Published: 2010-08-23   Modified: 2016-04-21  

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