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Genome-wide promoter methylation patterns are altered by a food component, genistein, during embryonic stem cell differentiation

Research Project

Project/Area Number 22659070
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeSingle-year Grants
Research Field Human genetics
Research InstitutionTokyo Medical and Dental University

Principal Investigator

SATO Noriko  東京医科歯科大学, 難治疾患研究所, 准教授 (70280956)

Project Period (FY) 2009 – 2011
Project Status Completed (Fiscal Year 2011)
Budget Amount *help
¥3,000,000 (Direct Cost: ¥2,700,000、Indirect Cost: ¥300,000)
Fiscal Year 2011: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2010: ¥1,700,000 (Direct Cost: ¥1,700,000)
Keywords環境感受性 / 胎内環境 / DNAメチル化-脱メチル化 / 着床期 / エピゲノム / 子宮内環境 / 新生DNAメチル化 / DNA脱メチル化 / DNAメチル化
Research Abstract

Environmental challenges during development affect the fetal epigenome, but the period(s) vulnerable to epigenetic dysregulation are not clear. By employing a soy phytoestrogen, genistein, that is known to alter the epigenetic states of the Avy allele during embryogenesis, we have explored the sensitive period for epigenetic regulation. The post-implantation period, when de novo DNA methylation actively proceeds, is amenable to in vitro analysis using a mouse embryonic stem(ES) cell differentiation system. Mouse ES cells were differentiated in the presence or absence of genistein, and DNA methylation patterns on day 10 were compared by microarray-based promoter methylation analysis coupled with a methylation-sensitive endonuclease(HpaII/McrBC)-dependent enrichment procedure. Moderate changes in methylation levels were observed in a subset of promoters following genistein treatment. Detailed investigation of the Ucp1 and Sytl1 promoters further revealed that genistein does not affect de novo methylation occurring between day 0 and day 4, but interferes with subsequent regulatory processes and leads to a decrease in methylation level for both promoters. Genistein perturbed the methylation pattern of differentiated ES cells after de novo methylation. Our observations suggest that, for a subset of genes, regulation after de novo DNA methylation in the early embryo may be sensitive to genistein.

Report

(3 results)
  • 2011 Annual Research Report   Final Research Report ( PDF )
  • 2010 Annual Research Report
  • Research Products

    (17 results)

All 2011 2010 2001 Other

All Journal Article (7 results) (of which Peer Reviewed: 4 results) Presentation (9 results) Remarks (1 results)

  • [Journal Article] Genome-wide DNA methylation analysis reveals phytoestrogen modification of promoter methylation patterns during embryonic stem cell differentiation2011

    • Author(s)
      Sato N, (他5名)
    • Journal Title

      PLoS ONE

      Volume: 6(4)

    • Related Report
      2011 Final Research Report
  • [Journal Article] DNA methylation profiling of embryonic stem cell differentiation into the three germ layers2011

    • Author(s)
      Isagawa T, Sato N(8名中5番目)
    • Journal Title

      PLoS ONE

      Volume: 6(10)

    • Related Report
      2011 Final Research Report
  • [Journal Article] Genistein promotes DNA demethylation of the steroidogenic factor 1(SF-1) promoter in endometrial stromal cells2011

    • Author(s)
      Matsukura H, Aisaki K, Igarashi K, Matsushima Y, Kanno J, Muramatsu M, Sudo K, Sato N.
    • Journal Title

      Biochem Biophys Res Commun

      Volume: 412(2) Pages: 366-372

    • Related Report
      2011 Final Research Report
  • [Journal Article] Genome-wide DNA methylation analysis reveals phytoestrogen modification of promoter methylation patterns during embryonic stem cell differentiation2011

    • Author(s)
      Sato N
    • Journal Title

      PLoS One

      Volume: 6 Issue: 4 Pages: e19278-e19278

    • DOI

      10.1371/journal.pone.0019278

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] DNA Methylation Profiling of Embryonic Stem Cell Differentiation into the Three Germ Layers2011

    • Author(s)
      Isagawa T, Nagae G, Shiraki N, Fujita T, Sato N, Ishikawa S, Kume S, Aburatani H
    • Journal Title

      PLoS ONE

      Volume: 6(10) Issue: 10 Pages: e26052-e26052

    • DOI

      10.1371/journal.pone.0026052

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Genistein promotes DNA demethylation of the steroidogenic factor 1 (SF-1) promoter in endometrial stromal cells2011

    • Author(s)
      Matsukura H
    • Journal Title

      Biochem Biophys Res Commun

      Volume: 412 Issue: 2 Pages: 366-72

    • DOI

      10.1016/j.bbrc.2011.07.104

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Genome-wide DNA Methylation Analysis Reveals Phytoestrogen Modification of Promoter Methylation Patterns During Embryonic Stem Cell Differentiation2011

    • Author(s)
      Noriko Sato
    • Journal Title

      PLoS ONE

      Volume: 6

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Presentation] Alteration of Ucp1 Promoter Methylation by Phytoestrogen in Mouse Embryoid Body Differentiation Culture2011

    • Author(s)
      Sato N
    • Organizer
      CDB Symposium 2011
    • Place of Presentation
      Kobe
    • Related Report
      2011 Final Research Report
  • [Presentation] Effects of Maternal Low Protein Diet on Methylation Variation in Leptin Promoter2011

    • Author(s)
      Sato N
    • Organizer
      WT-Scientific conference "Epignomics of common disease"
    • Place of Presentation
      Hinxton, UK
    • Related Report
      2011 Final Research Report
  • [Presentation] Effects of Maternal Low Protein Diet on Methylation Variation in Leptin Promoter2011

    • Author(s)
      Sato N
    • Organizer
      Wellcome Trust Scientific conference "Epignomics of common disease"
    • Place of Presentation
      英国Hinxton
    • Related Report
      2011 Annual Research Report
  • [Presentation] Alteration of Ucp1 Promoter Methylation by Phytoestrogen inMouse Embryoid Body Differentiation Culture2011

    • Author(s)
      Noriko Sato
    • Organizer
      CDB Symposium 2011
    • Place of Presentation
      兵庫、神戸
    • Related Report
      2010 Annual Research Report
  • [Presentation] Genome-wide DNA methylation analysis reveals Phytoestrogen Modification of Promoter Methylation Patterns During Embryonic Stem Cell Differentiation2011

    • Author(s)
      Noriko Sato
    • Organizer
      Epigenetics and Developmental Programming Conference
    • Place of Presentation
      英国、Newcastle upon Tyne
    • Related Report
      2010 Annual Research Report
  • [Presentation] DNA methylation profiling in differentiation of embryonic stem cells into three germ layers2010

    • Author(s)
      Isagawa, T, et al.
    • Organizer
      第33回日本分子生物学会年会
    • Place of Presentation
      神戸
    • Related Report
      2011 Final Research Report
  • [Presentation] ES細胞分化過程においてゲニステインがDNAメチル化状態に与える影響の解析2010

    • Author(s)
      佐藤憲子
    • Organizer
      第4回日本エピジェネティクス研究会
    • Place of Presentation
      米子
    • Related Report
      2011 Final Research Report
  • [Presentation] ES細胞分化過程においてゲニステインがDNAメチル化状態に与える影響の解析2010

    • Author(s)
      佐藤憲子
    • Organizer
      第4回日本エピジェネティクス研究会
    • Place of Presentation
      鳥取、米子
    • Related Report
      2010 Annual Research Report
  • [Presentation] Genome-wide DNA methylation analysis reveals Phytoestrogen Modification of Promoter Methylation PatternsDuring Embryonic Stem Cell Differentiation2001

    • Author(s)
      Sato N
    • Organizer
      Epigenetics and Developmental Programming Conference
    • Place of Presentation
      Newcastle upon Tyne, UK
    • Related Report
      2011 Final Research Report
  • [Remarks]

    • URL

      http://www.tmd.ac.jp/mri/epi/index.html

    • Related Report
      2011 Annual Research Report

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Published: 2010-08-23   Modified: 2016-04-21  

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