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RNA modification and self-discrimination : A possible link to the pathogenesis of autoimmune disease

Research Project

Project/Area Number 22659186
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeSingle-year Grants
Research Field 膠原病・アレルギー・感染症内科学
Research InstitutionUniversity of Miyazaki

Principal Investigator

KENMOCHI Naoya  宮崎大学, フロンティア科学実験総合センター, 教授 (00133124)

Co-Investigator(Renkei-kenkyūsha) TAKAYANAGI Atushi  慶應義塾大学, 医学部, 講師 (80245464)
Project Period (FY) 2010 – 2011
Project Status Completed (Fiscal Year 2011)
Budget Amount *help
¥3,290,000 (Direct Cost: ¥2,900,000、Indirect Cost: ¥390,000)
Fiscal Year 2011: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Fiscal Year 2010: ¥1,600,000 (Direct Cost: ¥1,600,000)
KeywordsRNA修飾 / ノンコーディングRNA / 抗RNA抗体 / リボソームRNA / snoRNA / 自己免疫疾患 / RNA抗体 / ゼブラフィッシュ / 人工抗体ライブラリー
Research Abstract

Non-coding RNAs undergo various posttranscriptional modifications. To investigate the physiological relevance of RNA modifications in autoimmune diseases, we generated artificial anti-RNA antibodies that bind to the epitope for patient autoantibodies and developed a zebrafish model of defective RNA modifications. Impaired RNA modification led to severe morphological defects and embryonic lethality in zebrafish, which suggests that RNA modifications play an important role in vertebrate development.

Report

(3 results)
  • 2011 Annual Research Report   Final Research Report ( PDF )
  • 2010 Annual Research Report
  • Research Products

    (37 results)

All 2012 2011 2010 Other

All Journal Article (11 results) (of which Peer Reviewed: 10 results) Presentation (18 results) Book (2 results) Remarks (4 results) Patent(Industrial Property Rights) (2 results)

  • [Journal Article] Dissecting the protein-RNA interface : the role of protein surface shapes and RNA secondary structures in protein-RNA recognition2012

    • Author(s)
      Iwakiri, J., Tateishi, H., Chakraborty, A., Patil, P. and Kenmochi, N.
    • Journal Title

      Nucleic Acids Res

      Volume: 40 Pages: 3299-3306

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Loss of ribosomal RNA modification causes developmental defects in zebrafish2012

    • Author(s)
      Higa-Nakamine, S., Suzuki, T., Uechi, T., Chakraborty, A., Nakajima, Y., Nakamura, M., Hirano, N., Suzuki, T. and Kenmochi, N.
    • Journal Title

      Nucleic Acids Res

      Volume: 40 Pages: 391-398

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Dissecting the protein-RNA interface : the role of protein surface shapes and RNA secondary structures in protein-RNA recognition2012

    • Author(s)
      Iwakiri J., Tateishi H., Chakraborty A., Patil P., and Kenmochi N.
    • Journal Title

      Nucleic Acids Res.

      Volume: 40 Issue: 8 Pages: 3299-3306

    • DOI

      10.1093/nar/gkr1225

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] リボソーム病とp53経路2011

    • Author(s)
      剣持直哉
    • Journal Title

      医学のあゆみ(RNA医学・医療)

      Volume: 238 Pages: 476-480

    • Related Report
      2011 Final Research Report
  • [Journal Article] Guarding the' Translation Apparatus': Defective ribosome biogenesis and the p53 signaling pathway2011

    • Author(s)
      Chakraborty, A., Uechi, T. and Kenmochi, N.
    • Journal Title

      Wiley Interdiscip Rev RNA

      Volume: 2 Pages: 507-522

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Erythropoiesis failure due to RPS19 deficiency is independent of an activated p53 response in a zebrafish model of Diamond-Blackfan anaemia2011

    • Author(s)
      Torihara, H., Uechi, U., Chakraborty, A., Shinya, M., Sakai N. and Kenmochi, N.
    • Journal Title

      Brit. J. Haematol

      Volume: 152 Pages: 648-654

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Screening of scFv-displaying phages recognizing distinct extracellular domains of EGF receptor by target-guided proximity labeling method2011

    • Author(s)
      Chang, C., Takayanagi, A., Yoshida, T. and Shimizu, N.
    • Journal Title

      J. Immunol. Methods

      Volume: 372 Pages: 127-136

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Loss of ribosomal RNA modification causes developmental defects in zebrafish2011

    • Author(s)
      Higa-Nakamine S, Suzuki T (第2著者) 他7名
    • Journal Title

      Nucleic Acids Research

      Volume: 40 Issue: 1 Pages: 391-398

    • DOI

      10.1093/nar/gkr700

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Erythropoiesis failure due to RPS19 deficiency is independent of an activated p53 response in a zebrafish model of Diamond-Blackfan anaemia2011

    • Author(s)
      Torihara H
    • Journal Title

      Br J Haematol

      Volume: 152(5) Pages: 648-654

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The NPC motif of aquaporin-11, unlike the NPA motif of known aquaporins, is essential for full expression of molecular function2011

    • Author(s)
      Ikeda M
    • Journal Title

      J.Biol.Chem

      Volume: 286(5) Pages: 3342-3350

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Guarding the 'translation apparatus' : defective ribosome biogenesis and the p53 signaling pathway

    • Author(s)
      Chakraborty A
    • Journal Title

      WIREs RNA

      Volume: (in press)

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Presentation] Loss of snoRNA expression impairs ribosomal RNA modification and causes developmental defects in zebrafish2012

    • Author(s)
      Naoya Kenmochi
    • Organizer
      Protein-RNA Interactions in Biology and Disease
    • Place of Presentation
      Santa Fe, USA
    • Year and Date
      2012-03-04
    • Related Report
      2011 Annual Research Report
  • [Presentation] Loss of snoRNA expression impairs ribosomal RNA modification and causes developmental defects in zebrafish.2012

    • Author(s)
      N. Kenmochi, S. Higa-Nakamine, T. Uechi, A. Chakraborty, Y. Nakajima, T. Suzuki and T. Suzuki
    • Organizer
      Protein-RNA Interactions in Biology and Disease
    • Place of Presentation
      Santa Fe
    • Related Report
      2011 Final Research Report
  • [Presentation] Identification and characterization of phage-displayed single chain antibodies recognizing U1 snRNA : A new method for generating anti-RNA antibodies2011

    • Author(s)
      Prakash Patil
    • Organizer
      第34回日本分子生物学会年会
    • Place of Presentation
      横浜
    • Year and Date
      2011-12-13
    • Related Report
      2011 Annual Research Report
  • [Presentation] Roles of protein surface shape and RNA secondary structure in protein-RNA recognition2011

    • Author(s)
      Junichi Iwakiri
    • Organizer
      CBI/JSBi 2011合同学会
    • Place of Presentation
      神戸
    • Year and Date
      2011-11-08
    • Related Report
      2011 Annual Research Report
  • [Presentation] RNA-protein interactions : Insights into the recognition mechanisms based on RNA secondary structures and protein surface shapes2011

    • Author(s)
      Junichi Iwakiri
    • Organizer
      第16回RNA Society Meeting "RNA 2011 Kyoto"
    • Place of Presentation
      京都
    • Year and Date
      2011-06-14
    • Related Report
      2011 Annual Research Report
  • [Presentation] タンパク質表面形状とRNA2次構造に基づくタンパク質-RNA相互作用部位の統計解析2011

    • Author(s)
      岩切淳一
    • Organizer
      第11回日本蛋白質科学会年会
    • Place of Presentation
      大阪
    • Year and Date
      2011-06-07
    • Related Report
      2011 Annual Research Report
  • [Presentation] リボソームの異常と赤血球形成不全:ゼブラフィッシュを用いた解析2011

    • Author(s)
      上地珠代, 中島由香里, 鳥原英嗣, 剣持直哉
    • Organizer
      第34回日本分子生物学会年会
    • Place of Presentation
      横浜
    • Related Report
      2011 Final Research Report
  • [Presentation] Development of transgenic zebrafish using RNAi technology to investigate the role of ribosome in cancer2011

    • Author(s)
      G. V. Yadav, A. Chakraborty, T. Uechi and N. Kenmochi
    • Organizer
      第34回日本分子生物学会年会
    • Place of Presentation
      横浜
    • Related Report
      2011 Final Research Report
  • [Presentation] When p53 senses faulty ribosomes : Dynamics of c-Myc target nucleolar proteins and their correlation with Tp53 response in Rpl11-deficient zebrafish2011

    • Author(s)
      A. Chakraborty, T. Uechi and N. Kenmochi
    • Organizer
      第34回日本分子生物学会年会
    • Place of Presentation
      横浜
    • Related Report
      2011 Final Research Report
  • [Presentation] Efficient Production of Recombinant Antibodies in Mammalian Cells by Transient Transfection of Expression Vectors with 2.5K "PEI-MAX"2011

    • Author(s)
      高柳淳, 吉田徹彦, 清水信義
    • Organizer
      第34回日本分子生物学会年会
    • Place of Presentation
      横浜
    • Related Report
      2011 Final Research Report
  • [Presentation] ゼブラフィッシュをモデルとしたリボソーム病発症の分子機構の解析2011

    • Author(s)
      剣持直哉
    • Organizer
      第84回日本生化学会大会(シンポジウム招待講演)
    • Place of Presentation
      京都
    • Related Report
      2011 Final Research Report
  • [Presentation] Ribosomal stress and the p53 network : An activated Tp53 response in Rpl11-deficient. zebrafish correlates with an upregulated c-Myc activity2011

    • Author(s)
      A. Chakraborty, T. Uechi and N. Kenmochi
    • Organizer
      Protein Synthesis and Translational Control
    • Place of Presentation
      Heidelberg
    • Related Report
      2011 Final Research Report
  • [Presentation] Ribosomal integrity and p53 pathway : Induction of Tp53 in Rpl11-deficient zebrafish correlates with enhanced transcription of c-Myc and its target genes involved in ribosome biogenesis2011

    • Author(s)
      A. Chakraborty, T. Uechi and N. Kenmochi
    • Organizer
      RNA 2011 : Sixteenth Annual Meeting of the RNA Society
    • Place of Presentation
      Kyoto
    • Related Report
      2011 Final Research Report
  • [Presentation] Defective erythropoiesis and ribosomal dysfunction in zebrafish model of Diamond-Blackfan anemia2011

    • Author(s)
      T. Uechi, Y. Nakajima, H. Torihara and N. Kenmochi
    • Organizer
      RNA 2011 : Sixteenth Annual Meeting of the RNA Society
    • Place of Presentation
      Kyoto
    • Related Report
      2011 Final Research Report
  • [Presentation] イントロンと共に進化するsnoRNA遺伝子の構成2010

    • Author(s)
      吉浜麻生
    • Organizer
      第33回日本分子生物学会年会・第83回日本生化学会大会 合同大会
    • Place of Presentation
      神戸
    • Year and Date
      2010-12-07
    • Related Report
      2010 Annual Research Report
  • [Presentation] 高次構造に着目したタンパク質-RNA相互作用の統計解析2010

    • Author(s)
      岩切淳一
    • Organizer
      第33回日本分子生物学会年会・第83回日本生化学会大会 合同大会
    • Place of Presentation
      神戸
    • Year and Date
      2010-12-07
    • Related Report
      2010 Annual Research Report
  • [Presentation] snOPY : A Small Nucleolar RNA Orthological Gene Database2010

    • Author(s)
      Naoya Kenmochi
    • Organizer
      15th Annual Meeting of the RNA Society
    • Place of Presentation
      Seattle
    • Year and Date
      2010-06-22
    • Related Report
      2010 Annual Research Report
  • [Presentation] ヒトゲノム情報と人工抗体ライブラリーを活用したプロテオーム解析の新戦略2010

    • Author(s)
      高柳淳
    • Organizer
      第33回日本分子生物学会年会
    • Place of Presentation
      神戸
    • Related Report
      2011 Final Research Report
  • [Book] Ribosomes and ribosomal proteins : more than just 'housekeeping'.2012

    • Author(s)
      Chakraborty, A. and Kenmochi, N
    • Publisher
      John Wiley & Sons Ltd
    • Related Report
      2011 Final Research Report
  • [Book] 【4章】真核生物のsmall RNA機能性RNAの分子生物学The molecular biology of non-coding RNA2010

    • Author(s)
      剣持直哉
    • Total Pages
      40
    • Publisher
      クバプロ
    • Related Report
      2010 Annual Research Report
  • [Remarks] (1) snoRNAデータベース

    • URL

      http://snoopy.med.miyazaki-u.ac.jp/

    • Related Report
      2011 Final Research Report
  • [Remarks] (2) RPGデータベース

    • URL

      http://ribosome.med.miyazaki-u.ac.jp/

    • Related Report
      2011 Final Research Report
  • [Remarks] (3)ホームページ

    • URL

      http://ribosome.med.miyazaki-u.ac.jp/labo/

    • Related Report
      2011 Final Research Report
  • [Remarks]

    • URL

      http://snoopy.med.miyazaki-u.ac.jp/

    • Related Report
      2011 Annual Research Report
  • [Patent(Industrial Property Rights)] 抗RNA抗体のスクリーニング方法及びRNA抗体の製造方法2011

    • Inventor(s)
      剣持直哉、吉浜麻生、高柳淳、清水信義
    • Industrial Property Rights Holder
      宮崎大学、慶應義塾
    • Filing Date
      2011-04-26
    • Related Report
      2011 Final Research Report
  • [Patent(Industrial Property Rights)] 抗RNA抗体のスクリーニング方法及びRNA抗体の製造方法2011

    • Inventor(s)
      剣持直哉、吉浜麻生、高柳淳、清水信義
    • Industrial Property Rights Holder
      剣持直哉、吉浜麻生、高柳淳、清水信義
    • Industrial Property Number
      2011-098698
    • Filing Date
      2011-04-26
    • Related Report
      2011 Annual Research Report

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Published: 2010-08-23   Modified: 2016-04-21  

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