Development of algorithms for genome sequencing using next-generationDNA sequencers
| Project/Area Number |
22700307
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| Research Category |
Grant-in-Aid for Young Scientists (B)
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| Allocation Type | Single-year Grants |
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| Research Field |
Bioinformatics/Life informatics
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| Research Institution | The University of Tokyo |
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Principal Investigator |
KASAHARA Masahiro 東京大学, 大学院・新領域創成科学研究科, 講師 (60376605)
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| Project Period (FY) |
2010 – 2012
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| Project Status |
Completed (Fiscal Year 2012)
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| Budget Amount *help |
¥3,900,000 (Direct Cost: ¥3,000,000、Indirect Cost: ¥900,000)
Fiscal Year 2012: ¥910,000 (Direct Cost: ¥700,000、Indirect Cost: ¥210,000)
Fiscal Year 2011: ¥910,000 (Direct Cost: ¥700,000、Indirect Cost: ¥210,000)
Fiscal Year 2010: ¥2,080,000 (Direct Cost: ¥1,600,000、Indirect Cost: ¥480,000)
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| Keywords | ゲノム / アルゴリズム / ゲノムアセンブリ / 遺伝学的地図 |
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| Research Abstract |
Genome sequencing using so-called next-generation DNA sequencers often results in rather fragmented sequences, and the positions of the fragmented sequences on chromosomes are usually unknown. We developed a system/algorithm that constructs a genetic map in a short time with less labor using next-generation DNA sequencers. Genetic maps generated by our algorithm can arrange fragmented sequences on chromosomes.
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Report
(4 results)
Research Products
(4 results)
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[Presentation] Yet-Another Sequence Alignment Tool2010
Author(s)
Masahiro Kasahara, YASRAT
Organizer
Joint Cold Spring Harbor Laboratory/Wellcome Trust Conference on Genome Informatics
Place of Presentation
Hinxton, The United Kingdom
Year and Date
2010-09-16
Related Report
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