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Amoeba-based Computing using SpatioTemporal Oscillatory Dynamics of True Slime Mold

Research Project

Project/Area Number 22700322
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeSingle-year Grants
Research Field Bioinformatics/Life informatics
Research InstitutionThe Institute of Physical and Chemical Research

Principal Investigator

AONO Masashi  独立行政法人理化学研究所, 揺律機能研究チーム, 基幹研究所研究員 (00391839)

Project Period (FY) 2010 – 2011
Project Status Completed (Fiscal Year 2011)
Budget Amount *help
¥4,160,000 (Direct Cost: ¥3,200,000、Indirect Cost: ¥960,000)
Fiscal Year 2011: ¥780,000 (Direct Cost: ¥600,000、Indirect Cost: ¥180,000)
Fiscal Year 2010: ¥3,380,000 (Direct Cost: ¥2,600,000、Indirect Cost: ¥780,000)
Keywords自己組織化 / 創発 / ナチュラルコンピューティング / 最適化 / 意思決定 / 資源配分 / カオス / 複雑系 / 人工知能 / 生体材料 / 自然計算
Research Abstract

A single-celled amoeboid organism, the true slime mold Physarum polycephalum, exhibits sophisticated information processing capabilities such as learning environmental information and solving complex optimization problems. These distributed processing capabilities emerge from self-organized spatiotemporal oscillatory dynamics of autonomously oscillating actin-myosin systems. In this study, constructing a bio-computer which applies light stimuli in response to spontaneous behaviors of the organism, I analyzed how the spatiotemporal dynamics produce the information processing capabilities and derived a mathematical model which reproduces well the emergent processes. Moreover, I focused on some analogies between the spatiotemporal dynamics of the organism and that of optical near-field interactions in quantum dots, and applied for a patent on a solution search system which uses the quantum dots for searching for solutions to one of the most complex combinatorial optimization problems, the Boolean satisfiability problem.

Report

(3 results)
  • 2011 Annual Research Report   Final Research Report ( PDF )
  • 2010 Annual Research Report
  • Research Products

    (43 results)

All 2012 2011 2010 Other

All Journal Article (18 results) (of which Peer Reviewed: 9 results) Presentation (19 results) Remarks (5 results) Patent(Industrial Property Rights) (1 results) (of which Overseas: 1 results)

  • [Journal Article] Performance enhancement of amoeba-based neurocomputer for 8-city traveling salesman problem2011

    • Author(s)
      Masashi Aono, Liping Zhu, Song-Ju Kim, Masahiko Hara
    • Journal Title

      Proceedings of 2011 International Symposium on Nonlinear Theory and its Applications(NOLTA)

      Pages: 104-107

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Problem-size scalability of amoeba-based neurocomputer for traveling salesman problem2011

    • Author(s)
      Liping Zhu, Masashi Aono, Song-Ju Kim, Masahiko Hara
    • Journal Title

      Proceedings of 2011 International Symposium on Nonlinear Theory and its Applications(NOLTA)

      Pages: 108-111

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Adaptive tug-of-war model for two-armed bandit problem, Proceedings of 2011 International Symposium on Nonlinear Theory and its Applications2011

    • Author(s)
      Song-Ju Kim, Etsushi Nameda, Masashi Aono, Masahiko Hara
    • Journal Title

      NOLTA

      Pages: 176-179

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Greedy versus social : Resource-competing oscillator network as a model of amoeba-based neurocomputer2011

    • Author(s)
      Masashi Aono, Yoshito Hirata, Masahiko Hara, Kazuyuki Aihara
    • Journal Title

      Natural Computing10

      Pages: 1219-1244

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Amoeba-based neurocomputing for 8-city traveling salesman problem2011

    • Author(s)
      Masashi Aono, Liping Zhu, Masahiko Hara
    • Journal Title

      International Journal of Unconventional Computing

      Volume: 7(6) Pages: 463-480

    • Related Report
      2011 Annual Research Report 2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] 粘菌ニューロコンピュータとその参照モデル:巡回セールスマン問題解決能力の問題サイズ依存性2011

    • Author(s)
      青野真士,金成主, Liping Zhu,原正彦
    • Journal Title

      電子情報通信学会,複雑コミュニケーションサイエンス研究会

      Pages: 29-35

    • Related Report
      2011 Final Research Report
  • [Journal Article] 粘菌の意思決定を模した網引きモデル:正確で速い並列探索アルゴリズムの物理的実装に向けて2011

    • Author(s)
      金成主,青野真士,行田悦資,原正彦
    • Journal Title

      電子情報通信学会,複雑コミュニケーションサイエンス研究会

      Pages: 36-41

    • Related Report
      2011 Final Research Report
  • [Journal Article] 粘菌コンピュータと確率探索アルゴリズム2011

    • Author(s)
      青野真士,金成主, Liping Zhu,行田悦資,原正彦
    • Journal Title

      システム/制御/情報

      Volume: 第55巻第12号 Pages: 526-531

    • Related Report
      2011 Final Research Report
  • [Journal Article] Greedy versus social : Resource-competing oscillator network as a model of amoeba-based neurocomputer2011

    • Author(s)
      Masashi Aono, Yoshito Hirata, Masahiko Hara, Kazuyuki Aihara
    • Journal Title

      Natural Computing

      Volume: 10 Issue: 4 Pages: 1219-1244

    • DOI

      10.1007/s11047-010-9224-y

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 粘菌コンピュータと確率探索アルゴリズム2011

    • Author(s)
      青野真士, 金成主, Liping Zhu, 行田悦資, 原正彦
    • Journal Title

      システム/制御/情報

      Volume: 55(12) Pages: 526-531

    • Related Report
      2011 Annual Research Report
  • [Journal Article] Performance enhancement of amoeba-based neurocomputer for 8-city traveling salesman problem2011

    • Author(s)
      Masashi Aono, Liping Zhu, Song-Ju Kim, Masahiko Hara
    • Journal Title

      Proceedings of 2011 International Symposium on Nonlinear Theory and its Applications (NOLTA)

      Volume: 2011 Pages: 104-107

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Problem-size scalability of amoeba-based neurocomputer for traveling salesman problem2011

    • Author(s)
      Liping Zhu, Masashi Aono, Song-Ju Kim, Masahiko Hara
    • Journal Title

      Proceedings of 2011 International Symposium on Nonlinear Theory and its Applications (NOLTA)

      Volume: 2011 Pages: 108-111

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Adaptive tug-of-war model for two-armed bandit problem2011

    • Author(s)
      Song-Ju Kim, Etsushi Nameda, Masashi Aono, Masahiko Hara
    • Journal Title

      Proceedings of 2011 International Symposium on Nonlinear Theory and its Applications (NOLTA)

      Volume: 2011 Pages: 176-179

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 粘菌ニューロコンピュータとその参照モデル:巡回セールスマン問題解決能力の問題サイズ依存性2011

    • Author(s)
      青野真士, 金成主, Liping Zhu, 原正彦
    • Journal Title

      電子情報通信学会,複雑コミュニケーションサイエンス研究会(CCS),予稿集

      Volume: CCS-2011-024 Pages: 29-35

    • Related Report
      2011 Annual Research Report
  • [Journal Article] 粘菌の意思決定を模した網引きモデル:正確で速い並列探索アルゴリズムの物理的実装に向けて2011

    • Author(s)
      金成主, 青野真士, 行田悦資, 原正彦
    • Journal Title

      電子情報通信学会,複雑コミュニケーションサイエンス研究会(CCS),予稿集

      Volume: CCS-2011-025 Pages: 36-41

    • Related Report
      2011 Annual Research Report
  • [Journal Article] 粘菌を組み込んだバイオコンピュータ2010

    • Author(s)
      青野真士,金成主,原正彦
    • Journal Title

      バイオサイエンスとインダストリー

      Volume: 68(5) Pages: 346-349

    • NAID

      10026587080

    • Related Report
      2011 Final Research Report
  • [Journal Article] 真性粘菌アメーバの時空間振動ダイナミクスによる自己組織的計算2010

    • Author(s)
      青野真士
    • Journal Title

      電気化学および工業物理化学

      Volume: 78(9) Pages: 779-782

    • NAID

      10026647700

    • Related Report
      2011 Final Research Report 2010 Annual Research Report
  • [Journal Article] 粘菌を組み込んだバイオコンピュータ2010

    • Author(s)
      青野真士, 金成主, 原正彦
    • Journal Title

      バイオサイエンスとインダストリー

      Volume: 68 Pages: 346-349

    • NAID

      10026587080

    • Related Report
      2010 Annual Research Report
  • [Presentation] 粘菌コンピューティング:時空間振動ダイナミクスによるボトムアップ型資源配分最適化2012

    • Author(s)
      青野真士
    • Organizer
      情報処理学会,第151回DPS研究会
    • Place of Presentation
      那覇,沖縄県青年会館
    • Year and Date
      2012-05-22
    • Related Report
      2011 Final Research Report
  • [Presentation] 時空間振動ダイナミクスによる資源配分と意思決定の全体最適化2011

    • Author(s)
      青野真士
    • Organizer
      東京大学工学部,ナノフォトニクスオープンセミナー
    • Place of Presentation
      東京,日本
    • Year and Date
      2011-11-17
    • Related Report
      2011 Final Research Report
  • [Presentation] 時空間振動ダイナミクスによる資源配分と意思決定の全体最適化2011

    • Author(s)
      青野真士
    • Organizer
      東京大学工学部,ナノフォトニクスオープンセミナー
    • Place of Presentation
      東京,日本(招待講演)
    • Year and Date
      2011-11-17
    • Related Report
      2011 Annual Research Report
  • [Presentation] 粘菌コンピューティング:時空間相関ダイナミクスを活用した資源配分の全体最適化2011

    • Author(s)
      青野真士
    • Organizer
      第2回複雑コミュニケーションサイエンス研究会
    • Place of Presentation
      宮古島,日本
    • Year and Date
      2011-11-11
    • Related Report
      2011 Annual Research Report 2011 Final Research Report
  • [Presentation] Performance enhancement of amoeba-based neurocomputer for 8-city traveling salesman problem2011

    • Author(s)
      Masashi Aono
    • Organizer
      International Symposium on Nonlinear Theory and its Applications(NOLTA)
    • Place of Presentation
      神戸,日本
    • Year and Date
      2011-09-05
    • Related Report
      2011 Final Research Report
  • [Presentation] Performance enhancement of amoeba-based neurocomputer for 8-city traveling salesman problem2011

    • Author(s)
      Masashi Aono
    • Organizer
      International Symposium on Nonlinear Theory and its Applications (NOLTA)
    • Place of Presentation
      神戸,日本
    • Year and Date
      2011-09-05
    • Related Report
      2011 Annual Research Report
  • [Presentation] Amoeba-based neurocomputing and resource-competing oscillator networks2011

    • Author(s)
      Masashi Aono
    • Organizer
      SIAM Conference on Applications of Dynamical Systems(2011)
    • Place of Presentation
      Snowbird, Utah, USA
    • Year and Date
      2011-05-24
    • Related Report
      2011 Final Research Report
  • [Presentation] Amoeba-based neurocomputing and resource-competing oscillator networks2011

    • Author(s)
      Masashi Aono
    • Organizer
      SIAM Conference on Applications of Dynamical Systems (2011)
    • Place of Presentation
      Snowbird, Utah, USA
    • Year and Date
      2011-05-24
    • Related Report
      2011 Annual Research Report
  • [Presentation] 粘菌コンピュータから見えてきたもの2011

    • Author(s)
      青野真士
    • Organizer
      理化学研究所社会知創成中村特別研究室+揺律機能研究チーム連携ワークショップ「生物を律する揺らぎのメカニズムを追い求めて」
    • Place of Presentation
      和光,日本
    • Year and Date
      2011-04-20
    • Related Report
      2011 Annual Research Report 2011 Final Research Report
  • [Presentation] Amoeba-based chaotic neurocomputing : Spatiotemporally-correlated search dynamics for optimization problems2011

    • Author(s)
      Masashi Aono
    • Organizer
      3rd International Conference on Chaos Revolution in Science, Technology, and Society(ICR2011)
    • Place of Presentation
      University of Indonesia, Depok City, Indonesia
    • Year and Date
      2011-02-22
    • Related Report
      2011 Final Research Report
  • [Presentation] Amoeba-based chaotic neurocomputing : Spatiotemporally-correlated search dynamics for optimization problems2011

    • Author(s)
      Masashi Aono
    • Organizer
      3rd International Conference on Chaos Revolution in Science, Technology, and Society (ICR2011)
    • Place of Presentation
      University of Indonesia, Depok City, Indonesia(招待講演)
    • Year and Date
      2011-02-22
    • Related Report
      2010 Annual Research Report
  • [Presentation] Amoeba-based neurocomputing : Spatio-temporal dynamics for overall optimization in resource allocation and decision making2010

    • Author(s)
      Masashi Aono
    • Organizer
      34th Mathematical Sciences based on Modeling, Analysis and Simulation Seminar, Meiji University Global COE Program
    • Place of Presentation
      Meiji University, Ikuta, Kanagawa, Japan
    • Year and Date
      2010-12-20
    • Related Report
      2011 Final Research Report
  • [Presentation] Amoeba-based neurocomputing : Spatio-temporal dynamics for overall optimization in resource allocation and decision making2010

    • Author(s)
      Masashi Aono
    • Organizer
      34th Mathematical Sciences based on Modeling, Analysis and Simulation Seminar, Meiji University Global COE Program
    • Place of Presentation
      Meiji University, Ikuta, Kanagawa, Japan(招待講演)
    • Year and Date
      2010-12-20
    • Related Report
      2010 Annual Research Report
  • [Presentation] 真正粘菌コンピュータと資源総量保存型振動子ネットワークによる並列探索2010

    • Author(s)
      青野真士
    • Organizer
      屋久島非線形問題若手ワークショップ~非線形科学と情報通信科学のフロンティア開拓~
    • Place of Presentation
      環境文化研修センター,屋久島,鹿児島,日本
    • Year and Date
      2010-11-06
    • Related Report
      2011 Final Research Report
  • [Presentation] 真正粘菌コンピュータと資源総量保存型振動子ネットワークによる並列探索2010

    • Author(s)
      青野真士
    • Organizer
      屋久島非線形問題若手ワークショップ~非線形科学と情報通信科学のフロンティア開拓~
    • Place of Presentation
      環境文化研修センター,屋久島,鹿児島,日本(招待講演)
    • Year and Date
      2010-11-06
    • Related Report
      2010 Annual Research Report
  • [Presentation] 真性粘菌コンピューティング2010

    • Author(s)
      青野真士
    • Organizer
      分子ロボティクス研究会7月定例会
    • Place of Presentation
      Campus Innovation Center,田町,東京,日本
    • Year and Date
      2010-07-30
    • Related Report
      2011 Final Research Report
  • [Presentation] 真性粘菌コンピューティング2010

    • Author(s)
      青野真士
    • Organizer
      分子ロボティクス研究会7月定例会
    • Place of Presentation
      Campus Innovation Center,田町,東京,日本(招待講演)
    • Year and Date
      2010-07-30
    • Related Report
      2010 Annual Research Report
  • [Presentation] Scalability of amoeba-based neurocomputer for traveling salesman problem2010

    • Author(s)
      Masashi Aono, Song-Ju Kim, Yoshito Hirata, Masahiko Hara, Kazuyuki Aihara
    • Organizer
      1st International Workshop on Computing with Spatiotemporal Dynamics
    • Place of Presentation
      The University of Tokyo, Hongo, Tokyo, Japan
    • Year and Date
      2010-06-23
    • Related Report
      2011 Final Research Report
  • [Presentation] Scalability of amoeba-based neurocomputer for traveling salesman problem2010

    • Author(s)
      Masashi Aono, Song-Ju Kim, Yoshito Hirata, Masahiko Hara, Kazuyuki Aihara
    • Organizer
      1^<st> International Workshop on Computing with Spatiotemporal Dynamics (CSD10)
    • Place of Presentation
      The University of Tokyo, Hongo, Tokyo, Japan(口頭発表)
    • Year and Date
      2010-06-23
    • Related Report
      2010 Annual Research Report
  • [Remarks]

    • Related Report
      2011 Final Research Report
  • [Remarks] 学会運営活動1.国際研究会Information Physics and Computing in Nano-scale Photonics and Materials 2012,オルレアン,フランス, 2012年9月:プログラム委員

    • URL

      http://www.youtube.com/user/MasashiAONO/videos

    • Related Report
      2011 Final Research Report
  • [Remarks] 2.電子情報通信学会複雑コミュニケーションサイエンス時限研究専門委員会:幹事補佐学会運営活動

    • Related Report
      2011 Final Research Report
  • [Remarks]

    • URL

      http://arn.local.frs.riken.jp/~aono/index-j.html

    • Related Report
      2011 Annual Research Report
  • [Remarks]

    • URL

      http://arn.local.frs.riken.jp/~aono/

    • Related Report
      2010 Annual Research Report
  • [Patent(Industrial Property Rights)] 量子ドットによる解探索システム2012

    • Inventor(s)
      青野真士,金成主,原正彦,成瀬誠,川添忠,大津元一
    • Industrial Property Rights Holder
      理化学研究所
    • Industrial Property Number
      2012-116725
    • Filing Date
      2012-05-22
    • Related Report
      2011 Final Research Report
    • Overseas

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Published: 2010-08-23   Modified: 2016-04-21  

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