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High-throughput definition of transcriptional units to grasp global expression states of non-coding RNA in budding yeast cells

Research Project

Project/Area Number 22710182
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeSingle-year Grants
Research Field Genome biology
Research InstitutionThe University of Tokyo

Principal Investigator

MIURA Fumihito  東京大学, 大学院・理学系研究科, 特任助教 (50447348)

Project Period (FY) 2010 – 2011
Project Status Completed (Fiscal Year 2011)
Budget Amount *help
¥4,420,000 (Direct Cost: ¥3,400,000、Indirect Cost: ¥1,020,000)
Fiscal Year 2011: ¥650,000 (Direct Cost: ¥500,000、Indirect Cost: ¥150,000)
Fiscal Year 2010: ¥3,770,000 (Direct Cost: ¥2,900,000、Indirect Cost: ¥870,000)
Keywordsトランスクリプトーム / 転写開始点 / 転写終結点 / 出芽酵母 / 対数増殖期 / 胞子形成 / 減数分裂 / ヌクレオソーム
Research Abstract

Simultaneous determinations of 5' and 3' terminal sequences of a mRNA molecule were conducted on budding yeast Saccharomyces cerevisiae with highly parallelized manner. Logarithmically growing cells, and cells before and six times every 2 hours after induction of sporulation were collected. Cloning-free GIS were applied for then, and sequencing was performed on a next-generation sequencer. Construction of a unique database storing transcription initiation and termination position of each budding yeast transcript as a pair is currently underway.

Report

(3 results)
  • 2011 Annual Research Report   Final Research Report ( PDF )
  • 2010 Annual Research Report
  • Research Products

    (13 results)

All 2011 2010 Other

All Journal Article (4 results) (of which Peer Reviewed: 1 results) Presentation (7 results) Remarks (2 results)

  • [Journal Article] Translation initiation : a regulatory role for poly(A) tracts in front of the AUG codon in Saccharomyces cerevisiae2011

    • Author(s)
      Xia, X
    • Journal Title

      Genetics

      Volume: 189 Pages: 469-478

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 進化したメチローム解析技術2010

    • Author(s)
      三浦史仁、伊藤隆司
    • Journal Title

      医学の歩み

      Volume: 236巻6号 Pages: 643-651

    • Related Report
      2011 Final Research Report
  • [Journal Article] ゲノム網羅的メチル化解析2010

    • Author(s)
      三浦史仁、伊藤隆司
    • Journal Title

      実験医学増刊「エピジェネティクスと疾患」

      Volume: 28巻15号 Pages: 2407-2414

    • Related Report
      2011 Final Research Report
  • [Journal Article] 進化したメチローム解析技術2010

    • Author(s)
      三浦史仁
    • Journal Title

      医学のあゆみ

      Volume: 236 Pages: 643-651

    • Related Report
      2010 Annual Research Report
  • [Presentation] ゲノム網羅的バイサルファイトシークエンシングの高感度化への取り組み2011

    • Author(s)
      三浦史仁
    • Organizer
      第34回日本分子生物学会年回
    • Place of Presentation
      神奈川
    • Year and Date
      2011-12-14
    • Related Report
      2011 Annual Research Report
  • [Presentation] ゲノム網羅的バイサルファイトシークエンシングの高感度化への取り組み2011

    • Author(s)
      三浦史仁、伊藤隆司
    • Organizer
      第34回日本分子生物学会年会
    • Place of Presentation
      横浜
    • Related Report
      2011 Final Research Report
  • [Presentation] サブナノグラムからはじめるゲノム網羅的バイサルファイトシークエンシング2011

    • Author(s)
      三浦史仁、榎本悠佑、伊藤隆司
    • Organizer
      日本エピジェネティクス研究会第5回年会
    • Place of Presentation
      熊本
    • Related Report
      2011 Final Research Report
  • [Presentation] Whole genome bisulfite sequencing from subnanogram quantities of DNA2011

    • Author(s)
      Fumihito Miura, Yusuke Enomoto, Ryo Dairiki and Takashi Ito
    • Organizer
      The 9th International Workshop on Advanced Genomics
    • Place of Presentation
      東京
    • Related Report
      2011 Final Research Report
  • [Presentation] サブナノグラムからはじめるゲノム網羅的バイサルファイトシークエンシング2010

    • Author(s)
      三浦史仁
    • Organizer
      第33回日本分子生物学会年会・第83回日本生化学会大会合同大会
    • Place of Presentation
      兵庫
    • Year and Date
      2010-12-08
    • Related Report
      2010 Annual Research Report
  • [Presentation] サブナノグラムからはじめるゲノム網羅的バイサルファイトシークエンシング2010

    • Author(s)
      三浦史仁、榎本悠佑、伊藤隆司
    • Organizer
      第33回日本分子生物学会年会
    • Place of Presentation
      神戸
    • Related Report
      2011 Final Research Report
  • [Presentation] ナノグラムからはじめるゲノム網羅的バイサルファイトシークエンシング2010

    • Author(s)
      三浦史仁、榎本悠佑、伊藤隆司
    • Organizer
      日本エピジェネティクス研究会第4回年会
    • Place of Presentation
      米子
    • Related Report
      2011 Final Research Report
  • [Remarks]

    • URL

      http://itolab.cb.k.u-tokyo.ac.jp/cgi-bin/DesktopTracks/bin/Browser

    • Related Report
      2011 Final Research Report
  • [Remarks]

    • URL

      http://itolab.cb.k.u-tokyo.ac.jp/cgi-bin/DesktopTracks/bin/Browser

    • Related Report
      2011 Annual Research Report

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Published: 2010-08-23   Modified: 2016-04-21  

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