Development of new system for making ortholog dataset
| Project/Area Number |
22710184
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| Research Category |
Grant-in-Aid for Young Scientists (B)
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| Allocation Type | Single-year Grants |
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| Research Field |
Genome biology
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| Research Institution | Shizuoka University |
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Principal Investigator |
HORIIKE Tokumasa 静岡大学, 若手グローバル研究リーダー育成拠点, 特任助教(テニュアトラック) (20535306)
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| Project Period (FY) |
2010 – 2011
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| Project Status |
Completed (Fiscal Year 2011)
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| Budget Amount *help |
¥4,420,000 (Direct Cost: ¥3,400,000、Indirect Cost: ¥1,020,000)
Fiscal Year 2011: ¥650,000 (Direct Cost: ¥500,000、Indirect Cost: ¥150,000)
Fiscal Year 2010: ¥3,770,000 (Direct Cost: ¥2,900,000、Indirect Cost: ¥870,000)
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| Keywords | ゲノム進化学 / オーソログ / 系統樹 / 系統解析 |
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| Research Abstract |
New system to construct ortholog dataset for organisms whose genome sequence data are available was developed. Ortholog is a homolog derived from speciation. The ortholog dataset is made with amino acid sequence data for all organisms by this system automatically. Since out-paralogs and horizontally transferred gene are removed from the dataset through the system, the dataset is suitable for phylogenetic analysis with massive amount of gene data.
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Report
(3 results)
Research Products
(13 results)
