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New approach towards ab-initio powder crystal structure determination using global optimization method

Research Project

Project/Area Number 22740077
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeSingle-year Grants
Research Field General mathematics (including Probability theory/Statistical mathematics)
Research InstitutionHigh Energy Accelerator Research Organization

Principal Investigator

OISHI-TOMIYASU Ryoko  大学共同利用機関法人高エネルギー加速器研究機構, 物質構造科学研究所, 特任助教 (30518824)

Project Period (FY) 2010-04-01 – 2013-03-31
Project Status Completed (Fiscal Year 2013)
Budget Amount *help
¥3,250,000 (Direct Cost: ¥2,500,000、Indirect Cost: ¥750,000)
Fiscal Year 2012: ¥910,000 (Direct Cost: ¥700,000、Indirect Cost: ¥210,000)
Fiscal Year 2011: ¥910,000 (Direct Cost: ¥700,000、Indirect Cost: ¥210,000)
Fiscal Year 2010: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Keywords結晶構造解析 / 粉末指数付け / ブラベー格子 / 二次形式 / 簡約理論 / 粉末未知構造解析 / 位相問題 / 平均テータ級数 / 多項式計画問題 / 大域的最適化 / 半正定値計画法
Research Abstract

Our study aims to create new application of mathematics to crystallography. A number of successful results were gained as a result, in both theoretical and practical aspects. Firstly, new algorithms and software were developed for error-stable Bravais lattice determination (BLD) and powder auto-indexing. As proved in several published papers, they are theoretically well-founded, error-stable and very prompt compared to all the existing methods. With regard to BLD, it was also proved that it is impossible to improve our algorithm as long as a similar methodology is adapted. Therefore, it may be said that the new software have decisive advantages in crystallography. In addition, a new method for ab-initio crystal structure determination was developed in order to enumerate all the solutions of so called "phase problem". For the method, additional study about its practical application is still necessary.

Report

(4 results)
  • 2013 Final Research Report ( PDF )
  • 2012 Annual Research Report
  • 2011 Annual Research Report
  • 2010 Annual Research Report
  • Research Products

    (41 results)

All 2014 2013 2012 2011 2010 Other

All Journal Article (13 results) (of which Peer Reviewed: 12 results) Presentation (15 results) Remarks (10 results) Patent(Industrial Property Rights) (3 results)

  • [Journal Article] Robust powder auto-indexing using many peaks2014

    • Author(s)
      R. O-Tomiyasu
    • Journal Title

      J. Appl. Cryst

      Volume: 47 Issue: 2 Pages: 593-598

    • DOI

      10.1107/s1600576714000922

    • Related Report
      2013 Final Research Report 2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Distribution rules of systematic absences on the Conway topograph and their application to powder auto-indexing2013

    • Author(s)
      R. O-Tomiyasu
    • Journal Title

      Acta Cryst

      Volume: A69 Issue: 6 Pages: 603-610

    • DOI

      10.1107/s0108767313021740

    • Related Report
      2013 Final Research Report 2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Reversed de Wolff figure of merit and its application to powder indexing solutions2013

    • Author(s)
      R. O-Tomiyasu
    • Journal Title

      J. Appl. Cryst

      Volume: 46 Issue: 5 Pages: 1277-1282

    • DOI

      10.1107/s0021889813018773

    • Related Report
      2013 Final Research Report 2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Rapid Bravais-lattice determination algorithm for lattice parameters containing large observation errors2012

    • Author(s)
      R. O-Tomiyasu
    • Journal Title

      Acta Cryst

      Volume: A68 Issue: 5 Pages: 525-535

    • DOI

      10.1107/s0108767312024579

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Application of matrix decomposition algorithms for singular matrices to Pawley method in Z-Rietveld2012

    • Author(s)
      R. Oishi-Tomiyasu, M. Yonemura, T. Morishima, A. Hoshikawa, S. Torii, T. Ishigaki and T. Kamiyama
    • Journal Title

      J. Appl. Cryst

      Volume: 45 Issue: 2 Pages: 299-308

    • DOI

      10.1107/s0021889812003998

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Application of matrix decomposition algorithms for singular matrices to Pawley method in Z-Rietveld2012

    • Author(s)
      R.Oishi-Tomiyasu, M.Yonemura, T.Morishima, A.Hoshikawa, S.Torii, T.Ishigaki, T.Kamiyama
    • Journal Title

      Journal of Applied Crystallography

      Volume: 45 Pages: 299-308

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Application of matrix decomposition algorithms for singular matrices to Pawley method in Z-Rietveld2012

    • Author(s)
      R.Oishi-Tomiyasu, M.Yonemura, T.Morishima, A.Hoshikawa, S.Torii, T.Ishigaki, T.Kamiyama
    • Journal Title

      Journal of applied crystallography

      Volume: 45 Pages: 299-308

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Algorithm and performance of a new powder indexing software Conograph2011

    • Author(s)
      R. Oishi-Tomiyasu, T. Kamiyama
    • Journal Title

      Acta Cryst

      Volume: A67

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Super High Resolution Powder Diffractometer at J-PARC2011

    • Author(s)
      S. Torii, M. Yonemura, T. Y. Surya Panca Putra, J. Zhang, P. Miao, T. Muroya, R. Tomiyasu, T. Morishima, S. Sato, H. Sagehashi, Y. Noda, T. Kamiyama
    • Journal Title

      J. Phys. Soc. Jpn, Supplement B

      Volume: 80

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Algorithm and performance of a new powder indexing software Conograph2011

    • Author(s)
      R.Oishi-Tomiyasu, T.Kamiyama
    • Journal Title

      Acta Crystallographica section A

      Volume: A67

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] On execution of Pawley method without requiring intensity constraints on overlapping reflections2010

    • Author(s)
      R. Oishi-Tomiyasu, M. Yonemura, A. Hoshikawa, S. Torii, T. Ishigaki & T. Kamiyama
    • Journal Title

      Acta Cryst

      Volume: A66

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] 数学者の立場からの粉末構造解析(解の一意性に関わる問題を中心に)2010

    • Author(s)
      富安亮子
    • Journal Title

      日本中性子科学会学会誌「波紋」サイエンス記事

      Volume: Vol.20, No.4 Pages: 274-280

    • NAID

      130007516746

    • Related Report
      2013 Final Research Report
  • [Journal Article] Rapid Bravais-lattice determination algorithm for lattice constants containing large obeservation errors

    • Author(s)
      R.Oishi-Tomiyasu
    • Journal Title

      掲載確定(Acta crystallographica section A)

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Presentation] 新しい粉末指数づけアルゴリズムとその実行結果について2011

    • Author(s)
      富安亮子、神山崇
    • Organizer
      日本結晶学会
    • Place of Presentation
      北海道大学
    • Related Report
      2011 Annual Research Report
  • [Presentation] On the distribution of vanishing Fourier coefficients of average theta series on the Voronoi graph and its application to crystallography2011

    • Author(s)
      富安亮子
    • Organizer
      第14回整数論オータムワークショップ
    • Place of Presentation
      白馬ハイマウントホテル
    • Related Report
      2011 Annual Research Report
  • [Presentation] Algorithm and performance of a new powder indexing software Conograph2011

    • Author(s)
      R.Oishi-Tomiyasu, T.Kamiyama
    • Organizer
      IUCr2011 XXII Congress and General Assembly
    • Place of Presentation
      Av.de la Capital de Espana Madrid(スペイン)
    • Related Report
      2011 Annual Research Report
  • [Presentation] On the distribution of vanishing Fourier coefficients of average theta series in the Conway topograph and its application to crystallography", Ryoko Tomiyasu, International conference2010

    • Author(s)
      Ryoko Tomiyasu
    • Organizer
      国際会議"Functions in Number Theory and Their Probabilistic Aspects"
    • Place of Presentation
      京都大学
    • Related Report
      2010 Annual Research Report
  • [Presentation] CM体の相対イデアル類群とPfister formの対応について2010

    • Author(s)
      富安亮子
    • Organizer
      研究集会「代数的整数論とその周辺」
    • Place of Presentation
      京都大学
    • Related Report
      2010 Annual Research Report
  • [Presentation] On execution of Pawley method without intensity constraints on overlapping reflections2010

    • Author(s)
      R.Oishi-Tomiyasu, M.Yonemura, A.Hoshikawa, S.Torii, T.Ishigaki, T.Kamiyama
    • Organizer
      ECM26
    • Place of Presentation
      Darmstadtium congress centre, Germany
    • Related Report
      2010 Annual Research Report
  • [Presentation] Application of topographs to auto-indexing of powder diffraction patterns2010

    • Author(s)
      Ryoko Oishi-Tomiyasu
    • Organizer
      MathCryst Satellite Conference of ECM26
    • Place of Presentation
      Darmstadtium congress centre, Germany
    • Related Report
      2010 Annual Research Report
  • [Presentation] 結晶学の格子決定問題(粉末指数づけ)への格子簡約理論の応用

    • Author(s)
      富安亮子
    • Organizer
      日本応用数理学会2012年会
    • Place of Presentation
      稚内全日空ホテル
    • Related Report
      2013 Final Research Report
  • [Presentation] 新しい粉末指数づけアルゴリズムとその実行結果について

    • Author(s)
      富安亮子, 神山崇
    • Organizer
      日本結晶学会年会
    • Place of Presentation
      北海道大学
    • Related Report
      2013 Final Research Report
  • [Presentation] On the distribution of vanishing Fourier coefficients of average theta series on the Voronoi graph and its application to crystallography

    • Author(s)
      R. O-Tomiyasu
    • Organizer
      第14回整数論オータムワークショップ「簡約理論とその応用」
    • Place of Presentation
      白馬ハイマウントホテル
    • Related Report
      2013 Final Research Report
  • [Presentation] Algorithm and performance of a new powder indexing software Conograph

    • Author(s)
      R. O-Tomiyasu, T. Kamiyama
    • Organizer
      IUCr2011
    • Place of Presentation
      Municipal Conference Centre, Spain
    • Related Report
      2013 Final Research Report
  • [Presentation] On the distribution of vanishing Fourier coefficients of average theta series in the Conway topograph and its application to crystallography

    • Author(s)
      R. O-Tomiyasu
    • Organizer
      International conference "Functions in Number Theory and Their Probabilistic Aspects"
    • Place of Presentation
      京都大学
    • Related Report
      2013 Final Research Report
  • [Presentation] CM 体の相対イデアル類群とPfister form の対応について

    • Author(s)
      富安亮子
    • Organizer
      研究集会「代数的整数論とその周辺」
    • Place of Presentation
      京都大学
    • Related Report
      2013 Final Research Report
  • [Presentation] On execution of Pawley method without intensity constraints on overlapping reflections

    • Author(s)
      R. O-Tomiyasu, M. Yonemura, A. Hoshikawa, S. Torii, T. Ishigaki, T. Kamiyama
    • Organizer
      ECM26
    • Place of Presentation
      Darmstadtium congress centre, Germany
    • Related Report
      2013 Final Research Report
  • [Presentation] Application of topographs to auto-indexing of powder diffraction patterns

    • Author(s)
      R. O-Tomiyasu
    • Organizer
      MathCryst Satellite Conference of ECM26
    • Place of Presentation
      Darmstadtium congress centre, Germany
    • Related Report
      2013 Final Research Report
  • [Remarks] Conograph GUI (各ソフトウェアのダウンロード用)

    • URL

      http://research.kek.jp/people/rtomi/ConographGUI/web_page.html

    • Related Report
      2013 Final Research Report
  • [Remarks] Conograph CUI (各ソフトウェアのダウンロード用)

    • URL

      http://research.kek.jp/people/rtomi/InstructionsConograph.html

    • Related Report
      2013 Final Research Report
  • [Remarks] Peak search program for Conograph (各ソフトウェアのダウンロード用)

    • URL

      http://research.kek.jp/people/rtomi/InstructionsPeakSearch.html

    • Related Report
      2013 Final Research Report
  • [Remarks] Bravais lattice determination module for Conograph (各ソフトウェアのダウンロード用)

    • URL

      http://research.kek.jp/people/rtomi/InstructionsBLDConograph.html

    • Related Report
      2013 Final Research Report
  • [Remarks] Download site of Conograph GUI test version

    • URL

      http://research.kek.jp/people/rtomi/ConographGUI/web_page.html

    • Related Report
      2012 Annual Research Report
  • [Remarks] Instructions for Conograph CUI program

    • URL

      http://research.kek.jp/people/rtomi/InstructionsConograph.html

    • Related Report
      2012 Annual Research Report
  • [Remarks] Instructions for PeakSearch CUI program

    • URL

      http://research.kek.jp/people/rtomi/InstructionsPeakSearch.html

    • Related Report
      2012 Annual Research Report
  • [Remarks] Powder auto-indexing software Conograph (ソース配布用)

    • URL

      http://sourceforge.jp/projects/conograph/

    • Related Report
      2012 Annual Research Report
  • [Remarks]

    • URL

      http://research.kek.jp/people/rtomi/

    • Related Report
      2011 Annual Research Report
  • [Remarks]

    • URL

      http://research.kek.jp/people/rtomi/

    • Related Report
      2010 Annual Research Report
  • [Patent(Industrial Property Rights)] 情報処理装置, 情報処理方法及びプログラム2014

    • Inventor(s)
      富安亮子
    • Industrial Property Rights Holder
      高エネルギー加速器研究機構
    • Industrial Property Rights Type
      特許
    • Industrial Property Number
      2011-058571
    • Filing Date
      2014-02-28
    • Related Report
      2013 Final Research Report
  • [Patent(Industrial Property Rights)] 情報処理装置、情報処理方法及びプログラム2014

    • Inventor(s)
      富安亮子
    • Industrial Property Rights Holder
      高エネルギー加速器研究機構
    • Industrial Property Rights Type
      特許
    • Filing Date
      2014-02-28
    • Related Report
      2012 Annual Research Report
  • [Patent(Industrial Property Rights)] 情報処理装置、情報処理方法及びプログラム2011

    • Inventor(s)
      富安亮子
    • Industrial Property Rights Holder
      高エネルギー加速器研究機構
    • Industrial Property Number
      2011-058571
    • Filing Date
      2011-03-16
    • Related Report
      2010 Annual Research Report

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Published: 2010-08-23   Modified: 2019-07-29  

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