• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

Single-Molecules Tunnel-Current Imaging for DNA duplex by using STM.

Research Project

Project/Area Number 22750078
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeSingle-year Grants
Research Field Analytical chemistry
Research InstitutionOsaka University

Principal Investigator

OHSHIRO Takahito  大阪大学, 産業科学研究所, 特任助教(常勤) (10462665)

Project Period (FY) 2010 – 2011
Project Status Completed (Fiscal Year 2011)
Budget Amount *help
¥4,030,000 (Direct Cost: ¥3,100,000、Indirect Cost: ¥930,000)
Fiscal Year 2011: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2010: ¥2,860,000 (Direct Cost: ¥2,200,000、Indirect Cost: ¥660,000)
Keywords表面分析 / DNA / 走査型トンネル顕微鏡 / 電気計測 / トンネル電流 / 単分子
Research Abstract

I developed methods on single-molecule tunnel-current identification with STM and nanogap-electrode. By using these methods, the electron-conductance values were determined for perfect-matched and miss-matched DNA duplexes, and single DNA/ RNA nucleotides, and post-transcriptional modified-nucleotides. Based on these relative conductance values, the sequence of oligonucleotides was successfully determined. In addition, methodologies, for a molecule-control by using nanopore, molecule-recognition by using photonic waveguide, and a construction of DNA-based nanostructures, were also developed.

Report

(3 results)
  • 2011 Annual Research Report   Final Research Report ( PDF )
  • 2010 Annual Research Report
  • Research Products

    (39 results)

All 2012 2011 2010

All Journal Article (14 results) (of which Peer Reviewed: 14 results) Presentation (24 results) Patent(Industrial Property Rights) (1 results)

  • [Journal Article] Synthesis and Chracterization of Small Circular Double-Stranded RNAs2011

    • Author(s)
      N. Ito, H. Abe, T. Ohshiro, Y. Nakashima, M. Maeda, and Y. Ito
    • Journal Title

      Chemical Communication.

      Volume: 47巻 Pages: 2125-2127

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Electrical detection of single methylcytosines in a DNA oligomer.2011

    • Author(s)
      M. Tsutsui., K. Matsubara, T. Ohshiro, M. Furuhashi, M. Taniguchi, T. Kawai
    • Journal Title

      J. Am. Chem. Soc.

      Volume: 133巻 Pages: 9124-9128

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Synthsis, Structure, and Biological Activity of Dumbbell-Shaped Nanocircular RNAs for RNA Interference2011

    • Author(s)
      N. Abe, H. Abe, C. Nagai, M. Harada, H. Hatakeyama, H. Harashima, T. Ohshiro, M. Nishihara, K. Furukawa, M. Maeda, S. Tsuneda, Y. Ito
    • Journal Title

      Bioconjugate Chemistry

      Volume: 22巻 Pages: 2082-2092

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Development of microfabricated TiO2 channel wave guides2011

    • Author(s)
      M. Furuhashi, M. Fujiwara, T. Ohshiro, M. Tsutsui, K. Matsubara, M. Taniguchi, T. Kawai
    • Journal Title

      AIP Advances

      Volume: 1巻 Pages: 32102-32102

    • NAID

      120004448547

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Synthesis, Structure, and Biological Activity of Dumbbell-Shaped Nanocircular RNAs for RNA Interference2011

    • Author(s)
      Abe N, Abe H, Nagai C, Harada C, Hatakeyama H, Harashima H., Ohshiro T, Maeda M, Tsuneda S, Ito Y
    • Journal Title

      Bioconjugate Chemistry

      Volume: 22 Issue: 10 Pages: 2082-2092

    • DOI

      10.1021/bc2003154

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Electrical Detection of Single Methylcytosines in a DNA Oligomer2011

    • Author(s)
      Tomoji Kawai
    • Journal Title

      Journal of the American Chemical Society

      Volume: 133 Issue: 23 Pages: 9124-9128

    • DOI

      10.1021/ja203839e

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Development of microfabricated TiO_2 channel waveguides2011

    • Author(s)
      M.Furuhashi, M.Fujiwara, T.Ohshiro, M.Tsutsui, K.Matsubara, M.Taniguchi, S.Takeuchi, T.Kawai
    • Journal Title

      AIP Advances

      Volume: Vol.1 Issue: 3 Pages: 32102-32102

    • DOI

      10.1063/1.3615716

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Synthesis and Characterization of Small Circular Double-Stranded RNAs.2011

    • Author(s)
      N.Ito, H.Abe, T.Ohshiro, Y.Nakashima, M.Maeda, Y.Ito.
    • Journal Title

      Chem.Comm

      Volume: 47 Pages: 2125-2127

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Single-Molecule Imaging of DNA Duplex Immobilized on Surfaces with Scanning Tunneling Microscope2010

    • Author(s)
      T. Ohshiro, M. Mizuo
    • Journal Title

      Chemical Communication

      Volume: 46巻 Pages: 2581-2583

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] A Facile Method Towards Cyclic Assembly of Gold Nanoparticles Using DNA Template Alone2010

    • Author(s)
      T. Ohshiro, T. Zako, R. Watanabe-Tamaki, T. Tanaka, Mizuo, S
    • Journal Title

      Chemical Communication

      Volume: 46巻 Pages: 6132-6134

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Atomically controlled fabrications of subnanometer scale electrode gaps2010

    • Author(s)
      M. Tustsui, T. Ohshiro
    • Journal Title

      J. Appl. Phys.

      Volume: 108巻 Pages: 64312-64312

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Single-molecule Imaging of DNA Duplex Immobilized on Surfaces with Scanning Tunneling Microscope2010

    • Author(s)
      T.Ohshiro, M.Mizuo
    • Journal Title

      Chem.Comm

      Volume: 46 Pages: 2581-2583

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A Facile Method Towards Cyclic Assembly of Gold Nanoparticles Using DNA template Alone.2010

    • Author(s)
      T.Ohshiro, T.Zako, R.Watanabe-Tamaki, T.Tanaka, M.Mizuo
    • Journal Title

      Chem.Comm

      Volume: 46 Pages: 6132-6134

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Atomically controlled fabrications of subnameter scale electrode gaps.2010

    • Author(s)
      M.Tustui, T.Ohshiro, K.Matsubara, M.Furuhashi, M.Taniguchi, T.Kawai.
    • Journal Title

      J.Appl.Phys.

      Volume: 108 Pages: 64312-64312

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Presentation] トンネル電流を指標とした単分子DNA/ RNA配列決定法の開発2012

    • Author(s)
      大城敬人, 松原一喜, 筒井真楠, 古橋匡幸, 谷口正輝, 川合知二
    • Organizer
      日本化学会第92春季年会
    • Place of Presentation
      慶応大学(神奈川)
    • Year and Date
      2012-03-28
    • Related Report
      2011 Final Research Report
  • [Presentation] トンネル電流を指標とした単分子DNA/RNA配列決定法の開発2012

    • Author(s)
      大城敬人
    • Organizer
      日本化学会第92春季年会
    • Place of Presentation
      慶応大学日吉キャンパス
    • Year and Date
      2012-03-28
    • Related Report
      2011 Annual Research Report
  • [Presentation] Single-Molecule Identification of DNA/ RNA Towards Tunnel-Current Based Genome Sequencing2012

    • Author(s)
      Takahito Ohshiro, Kazuki Matsubara, Makusu Tsutsui, Masayuki Furuhashi, Masateru Taniguchi, Tomoji Kawai
    • Organizer
      International Symposium on Innovative Nano-Biodevices(ISIN2012)
    • Place of Presentation
      Nagoya University(Nagoya)
    • Year and Date
      2012-03-21
    • Related Report
      2011 Final Research Report
  • [Presentation] Single-Molecule Identification of DNA/RNA Towards Tunnel-Current Based Genome Sequencing2012

    • Author(s)
      Takahito Ohshiro
    • Organizer
      International Symposium on Innovative Nano-Biodevices (ISIN2012)
    • Place of Presentation
      名古屋大学豊田講堂
    • Year and Date
      2012-03-21
    • Related Report
      2011 Annual Research Report
  • [Presentation] ゲーティングナノデバイスによる単一バイオ分子計測2012

    • Author(s)
      大城敬人, 佐々木優太, 筒井真楠, 川野, 谷口正輝, 川合知二
    • Organizer
      第59回応用物理学関係連合講演会
    • Place of Presentation
      早稲田大学(東京)
    • Year and Date
      2012-03-16
    • Related Report
      2011 Final Research Report
  • [Presentation] ゲーティングナノデバイスによる単一バイオ分子計測2012

    • Author(s)
      大城敬人
    • Organizer
      第59回応用物理学関連連合講演会
    • Place of Presentation
      早稲田大学
    • Year and Date
      2012-03-16
    • Related Report
      2011 Annual Research Report
  • [Presentation] トンネル電流による単分子DNA/ RNAの配列決定2011

    • Author(s)
      大城敬人, 松原一喜, 筒井真楠, 古橋匡幸, 谷口正輝, 川合知二
    • Organizer
      日本分析化学第60回年回
    • Place of Presentation
      名古屋大学(名古屋)
    • Year and Date
      2011-09-14
    • Related Report
      2011 Final Research Report
  • [Presentation] トンネル電流による単分子DNA/RNAの配列決定2011

    • Author(s)
      大城敬人
    • Organizer
      日本分析化学第60回年会
    • Place of Presentation
      名古屋大学東山キャンパス
    • Year and Date
      2011-09-14
    • Related Report
      2011 Annual Research Report
  • [Presentation] トンネル電流を指標とした単分子DNA/ RNA鎖の配列決定2011

    • Author(s)
      大城敬人, 松原一喜, 筒井真楠, 古橋匡幸, 谷口正輝, 川合知二
    • Organizer
      第72回応用物理学
    • Place of Presentation
      山形大学(山形)
    • Year and Date
      2011-08-25
    • Related Report
      2011 Final Research Report
  • [Presentation] トンネル電流を指標とした単分子DNA/RNA鎖の配列決定2011

    • Author(s)
      大城敬人
    • Organizer
      第72回応用物理学会
    • Place of Presentation
      山形大学
    • Year and Date
      2011-08-25
    • Related Report
      2011 Annual Research Report
  • [Presentation] Single-Molecule Tunnel-Current Detection Towards a Sequencing of Oligonucleotides, Global Technology Congress2011

    • Author(s)
      Takahito Ohshiro, Kazuki Matsubara, Makusu Tsutsui, Masayuki Furuhashi, Masateru Taniguchi, Tomoji Kawai
    • Organizer
      1^<st> Next Generation Sequencer Congress
    • Place of Presentation
      Hyatt at Fisherman' s Wharf(San Francisco, USA)
    • Year and Date
      2011-07-06
    • Related Report
      2011 Final Research Report
  • [Presentation] Single-Molecule Tunnel-Current Detection Towards a Sequencing of Oligonucleotides2011

    • Author(s)
      Takahito Ohshiro
    • Organizer
      Global Technology Congress, 1^<st> Next Generation Sequencer Congress
    • Place of Presentation
      ハイアットハーバーサイド、サンフランシスコ、米国
    • Year and Date
      2011-07-06
    • Related Report
      2011 Annual Research Report
  • [Presentation] トンネル電流を指標とした神経伝達分子の単分子計測2011

    • Author(s)
      大城敬人, 筒井真楠, 松原一喜, 古橋匡幸, 谷口正輝, 川合知二
    • Organizer
      日本化学会第91春季年会
    • Place of Presentation
      神奈川大学横浜キャンパス
    • Year and Date
      2011-03-28
    • Related Report
      2010 Annual Research Report
  • [Presentation] トンネル電流を指標とした神経伝達分子の単分子計測2011

    • Author(s)
      大城敬人, 松原一喜, 筒井真楠, 古橋匡幸, 谷口正輝, 川合知二
    • Organizer
      日本化学会第91春季年会
    • Place of Presentation
      神奈川大学(横浜)
    • Year and Date
      2011-03-26
    • Related Report
      2011 Final Research Report
  • [Presentation] トンネル電流を指標とした単分子DNAコドンの配列決定2011

    • Author(s)
      大城敬人, 松原一喜, 筒井真楠, 古橋匡幸, 谷口正輝, 川合知二
    • Organizer
      第58回応用物理学関係連合講演会
    • Place of Presentation
      神奈川工科大(厚木)
    • Year and Date
      2011-03-24
    • Related Report
      2011 Final Research Report
  • [Presentation] トンネル電流を指標とした生理活性核酸分子の単分子計測2011

    • Author(s)
      大城敬人, 筒井真楠, 松原一喜, 古橋匡幸, 谷口正輝, 川合知二
    • Organizer
      第58回応用物理学関係連合講演会
    • Place of Presentation
      神奈川工業大学
    • Year and Date
      2011-03-24
    • Related Report
      2010 Annual Research Report
  • [Presentation] Single-Molecule Identification of DNA/ RNA Towards Tunnel-Current Based Genome Sequencing2011

    • Author(s)
      Takahito Ohshiro, Kazuki Matsubara, Makusu Tsutsui, Masayuki Furuhashi, Masateru Taniguchi, Tomoji Kawai
    • Organizer
      International Symposium : Advanced Science and Technology for Single Molecular Analysis of DNA and Rerated Molecules(ISSMA2011)
    • Place of Presentation
      Kyoto International Convention Center(Kyoto, Japan)
    • Year and Date
      2011-01-22
    • Related Report
      2011 Final Research Report
  • [Presentation] Single-molecule Imaging of DNA Duplex Immobilized on Surfaces with Scanning Tunneling Microscope2010

    • Author(s)
      T.Ohshiro, M.Mizuo
    • Organizer
      The International Chemical Congress of Pacific Basin Societies (PacificChem 2010)
    • Place of Presentation
      ハワイコンベンションセンター
    • Year and Date
      2010-12-19
    • Related Report
      2010 Annual Research Report
  • [Presentation] Single-molecule Imaging of DNA Immobilized on Surfaces with Scanning Tunneling Microscope2010

    • Author(s)
      Takahito Ohshiro, Mizuo Maeda
    • Organizer
      Pacifichem 2011
    • Place of Presentation
      Hawaii Convention Center(Hawaii, USA)
    • Year and Date
      2010-12-18
    • Related Report
      2011 Final Research Report
  • [Presentation] Single-Molecule Identification of DNA/ RNA Towards Tunnel-Current based Genome Sequencing2010

    • Author(s)
      Takahito Ohshiro, Kazuki Matsubara, Makusu Tsutsui, Masayuki Furuhashi, Masateru Taniguchi, Tomoji Kawai
    • Organizer
      7^<th> Handai Nanoscience and Nanotecnonology International Sympisium
    • Place of Presentation
      Osaka University(Osaka, Japan)
    • Year and Date
      2010-11-10
    • Related Report
      2011 Final Research Report
  • [Presentation] トンネル電流を指標とした生理活性核酸分子の単分子計測2010

    • Author(s)
      大城敬人, 筒井真楠, 松原一喜, 古橋匡幸, 谷口正輝, 川合知二
    • Organizer
      第72回応用物理学会
    • Place of Presentation
      長崎大学
    • Year and Date
      2010-09-16
    • Related Report
      2010 Annual Research Report
  • [Presentation] トンネル電流を指標とした生理活性核酸分子の単分子計測2010

    • Author(s)
      大城敬人, 松原一喜, 筒井真楠, 古橋匡幸, 谷口正輝, 川合知二
    • Organizer
      第71回応用物理学会
    • Place of Presentation
      長崎大学(長崎)
    • Year and Date
      2010-09-08
    • Related Report
      2011 Final Research Report
  • [Presentation] 走査型トンネル顕微鏡による基板上に固定したDNA二重鎖の単分子観察2010

    • Author(s)
      大城敬人, 前田瑞夫
    • Organizer
      第59回高分子年会
    • Place of Presentation
      国際フォーラム(横浜)
    • Year and Date
      2010-05-26
    • Related Report
      2011 Final Research Report
  • [Presentation] STMによる基板固定化したDNA二重鎖の単分子観察2010

    • Author(s)
      大城敬人, 前田瑞夫
    • Organizer
      第59回高分子年会
    • Place of Presentation
      パシフィコ横浜
    • Year and Date
      2010-05-26
    • Related Report
      2010 Annual Research Report
  • [Patent(Industrial Property Rights)] ポリヌクレオチドの塩基配列決定する方法および、ポリヌクレオチドの塩基配列を決定する装置2012

    • Inventor(s)
      川合知二、谷口正輝、大城敬人、筒井真楠、松原一喜
    • Industrial Property Rights Holder
      大阪大学
    • Industrial Property Number
      2012-077975
    • Filing Date
      2012-03-29
    • Related Report
      2011 Annual Research Report

URL: 

Published: 2010-08-23   Modified: 2016-04-21  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi