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Functional elucidation of the AMP metabolic pathway in Archaea

Research Project

Project/Area Number 22750150
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeSingle-year Grants
Research Field Chemistry related to living body
Research InstitutionKyoto University

Principal Investigator

SATO Takaaki  京都大学, 大学院・工学研究科, 助教 (60571411)

Project Period (FY) 2010 – 2011
Project Status Completed (Fiscal Year 2011)
Budget Amount *help
¥4,160,000 (Direct Cost: ¥3,200,000、Indirect Cost: ¥960,000)
Fiscal Year 2011: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Fiscal Year 2010: ¥2,210,000 (Direct Cost: ¥1,700,000、Indirect Cost: ¥510,000)
Keywordsアーキア / 微生物代謝 / ペントース代謝 / AMP / バイオテクノロジー / 核酸代謝 / ヌクレオシド代謝
Research Abstract

In order to elucidate the function of an archaeal AMP metabolic pathway, biochemical and structural analyses of enzymes composing the pathway were performed. The results revealed that the AMP metabolic pathway is dramatically activated by AMP and ADP and degrades not only AMP but also CMP and UMP. These results suggested that the physiological functions of this pathway may be involved in the assimilation of extracellular nucleotides and/or in salvaging energy from AMP/CMP/UMP when intracellular energy levels are low, and AMP/ADP concentrations are relatively high.

Report

(4 results)
  • 2011 Annual Research Report   Final Research Report ( PDF )
  • 2010 Annual Research Report
  • Products Report
  • Research Products

    (19 results)

All 2013 2012 2011 2010

All Journal Article (5 results) (of which Peer Reviewed: 5 results,  Open Access: 1 results) Presentation (11 results) (of which Int'l Joint Research: 2 results,  Invited: 1 results) Book (3 results)

  • [Journal Article] Dynamic, ligand-dependent conforma-tional change triggers the reaction of ribose-1, 5-bisphosphate isomerase from Thermococcus kodakarensis KOD12012

    • Author(s)
      Akira Nakamura, Masahiro Fujihashi, Riku Aono, Takaaki Sato, Yosuke Nishiba, Shosuke Yoshida, Ayumu Yano, Haruyuki Atomi, Tadayuki Imanaka, and Kunio Miki
    • Journal Title

      J. Biol. Chem

      Volume: (in press) Issue: 25 Pages: 20784-20796

    • DOI

      10.1074/jbc.m112.349423

    • Related Report
      2011 Annual Research Report 2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Enzymatic characterization of AMP phosphorylase and ribose-1,5-bisphosphate isomerase functioning in an archaeal AMP metabolic pathway.2012

    • Author(s)
      Riku Aono, Takaaki Sato, Ayumu Yano, Shosuke Yoshida, Yuichi Nishitani, Kunio Miki, Tadayuki Imanaka, and Haruyuki Atomi
    • Journal Title

      Journal of Bacteriology

      Volume: 194 Issue: 24 Pages: 6847-6855

    • DOI

      10.1128/jb.01335-12

    • NAID

      120005304191

    • Related Report
      Products Report
    • Peer Reviewed / Open Access
  • [Journal Article] Application of hyperthermophiles and their enzymes2011

    • Author(s)
      Atomi, H., Sato, T., Kanai, T
    • Journal Title

      Cur. Opi. Biotech

      Volume: vol.22 Issue: 5 Pages: 618-626

    • DOI

      10.1016/j.copbio.2011.06.010

    • Related Report
      2011 Annual Research Report 2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Novel Metabolic Pathways in Archaea2011

    • Author(s)
      Takaaki Sato and Haruyuki Atomi
    • Journal Title

      Current Opinion in Microbiology

      Volume: vol.14, No.3 Issue: 3 Pages: 307-314

    • DOI

      10.1016/j.mib.2011.04.014

    • Related Report
      2011 Annual Research Report 2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Microbial inorganic carbon fixation2010

    • Author(s)
      T.Sato, H.Atomi
    • Journal Title

      Encyclopedia of Life Sciences

      Volume: DOI:10.1002/9780470015902.a0021900. Pages: 1-12

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Presentation] 超好熱性アーキア Thermococcus kodakarensis 由来ボキナーゼファミリータンパク質TK2285の機能解析2013

    • Author(s)
      佐藤 喬章, 藤橋 雅宏, 宮本 幸花, 三木 邦夫, 跡見 晴幸
    • Organizer
      日本農芸化学会2013年度大会
    • Place of Presentation
      東北大学
    • Year and Date
      2013-03-25
    • Related Report
      Products Report
  • [Presentation] Functional characterization of three ribokinase homologs on the genome of the hyperthermophilic archaeon Thermococcus kodakarensis2013

    • Author(s)
      Takaaki Sato, Riku Aono, Masahiro Fujihashi, Yukika Miyamoto, Keiko Kuwata, Eriko Kusaka, Haruo Fujita, Kunio Miki and Haruyuki Atomi
    • Organizer
      Biotechnology and Chemistry for GREEN GROWTH (招待講演) (国際学会)
    • Place of Presentation
      Osaka, Japan
    • Year and Date
      2013-03-11
    • Related Report
      Products Report
    • Int'l Joint Research / Invited
  • [Presentation] 超好熱性アーキア由来 ribokinase family タンパク質の機能解析2013

    • Author(s)
      佐藤 喬章, 藤橋 雅宏, 宮本 幸花, 桑田 啓子, 日下 絵里子, 藤田 春雄, 三木 邦夫, 跡見 晴幸
    • Organizer
      第7回ゲノム微生物学会大会
    • Place of Presentation
      長浜バイオ大学
    • Year and Date
      2013-03-08
    • Related Report
      Products Report
  • [Presentation] Dynamic, ligand-dependent conformational change triggers the reaction of ribose-1,5-bisphosphate isomerase from Thermococcus kodakarensis2012

    • Author(s)
      Takaaki Sato, Akira Nakamura, Riku Aono, Masahiro Fujihashi, Yosuke Nishiba, Shosuke Yoshida, Ayumu Yano, Tadayuki Imanaka, Kunio Miki and Haruyuki Atomi
    • Organizer
      Extremophiles 2012 (国際学会)
    • Place of Presentation
      Seville, Spain
    • Year and Date
      2012-09-10
    • Related Report
      Products Report
    • Int'l Joint Research
  • [Presentation] Archaea特異的AMP代謝経路の生理的機能の解明2011

    • Author(s)
      佐藤喬章、青野陸、中村顕、西谷優一、藤橋雅宏、矢野歩、吉田昭介、今中忠行、三木邦夫、跡見晴幸
    • Organizer
      極限環境生物学会
    • Place of Presentation
      長崎大学坂本キャンパス1良順会館
    • Year and Date
      2011-11-28
    • Related Report
      2011 Final Research Report
  • [Presentation] Novel enzymes involved in pentose metabolism in the Archaea2011

    • Author(s)
      Takaaki Sato, Riku Aono, Akira Nakamura, Yuichi Nishitani, Masahiro Fujihashi, Ayumu Yano, Shosuke Yoshida, Tadayuki Imanaka, Kunio Miki, and Haruyuki Atomi
    • Organizer
      Japanese-German Workshop on Enzyme Technology
    • Place of Presentation
      Toyama, Japan
    • Year and Date
      2011-09-14
    • Related Report
      2011 Annual Research Report 2011 Final Research Report
  • [Presentation] Unique metabolism involving archaeal Rubiscos2011

    • Author(s)
      Takaaki Sato
    • Organizer
      Wageningen University and Research Centre/Kyoto University Joint Workshop
    • Place of Presentation
      Kyoto, Japan
    • Year and Date
      2011-08-26
    • Related Report
      2011 Annual Research Report 2011 Final Research Report
  • [Presentation] 超好熱性アーキアThermococcus kodakarensisにおけるペントース代謝の解析2010

    • Author(s)
      佐藤喬章、今中忠行、跡見晴幸
    • Organizer
      極限環境生物学会
    • Place of Presentation
      京都大学宇治キャンパスおうばくプラザ
    • Year and Date
      2010-11-16
    • Related Report
      2011 Final Research Report
  • [Presentation] 超好熱性アーキアThermococcus kodakarensisにおけるペントース代謝の解析2010

    • Author(s)
      佐藤喬章、今中忠行、跡見晴幸
    • Organizer
      第11回極限環境生物学会年会
    • Place of Presentation
      京都大学宇治キャンパス(京都)
    • Year and Date
      2010-11-15
    • Related Report
      2010 Annual Research Report
  • [Presentation] Studies on a novel AMP metabolic pathway in Archaea2010

    • Author(s)
      Takaaki Sato, Ayumu Yano, Shosuke Yoshida, Tadayuki Imanaka, and Haruyuki Atomi
    • Organizer
      8th Extremophiles
    • Place of Presentation
      Ponta Delgada, Azores, Portugal
    • Year and Date
      2010-09-14
    • Related Report
      2011 Final Research Report
  • [Presentation] Studies on a novel AMP metabolic pathway in Archaea2010

    • Author(s)
      T.Sato, A.Yano, S.Yoshida, T.Imanaka, H.Atomi
    • Organizer
      8^<th> Extremophiles
    • Place of Presentation
      Ponta Delgada, Azores, Portugal.
    • Year and Date
      2010-09-14
    • Related Report
      2010 Annual Research Report
  • [Book] "Microbial inorganic carbon fixation" Encyclopedia of Life Sciences2010

    • Author(s)
      Takaaki Sato, and Haruyuki Atomi
    • Related Report
      2011 Final Research Report
  • [Book] "超好熱菌ゲノム情報に基づいた新規代謝酵素・経路の解明"酵素利用技術大系、第5編第5章第2節2010

    • Author(s)
      跡見晴幸、佐藤喬章、横大路裕介、今中忠行
    • Related Report
      2011 Final Research Report
  • [Book] 酵素利用技術大系 第5編 第5章 第2節「超好熱菌ゲノム情報に基づいた新規代謝酵素・経路の解明」2010

    • Author(s)
      跡見晴幸、佐藤喬章、横大路裕介、今中忠行
    • Publisher
      株式会社エヌ・ティー・エス 小宮山眞 監修
    • Related Report
      2010 Annual Research Report

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Published: 2010-08-23   Modified: 2017-12-13  

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