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Development of a method for regulating transcription by light sensitive hairpin-type peptide nucleic acid

Research Project

Project/Area Number 22750155
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeSingle-year Grants
Research Field Chemistry related to living body
Research InstitutionOsaka University

Principal Investigator

KAIHATSU Kunihiro  大阪大学, 産業科学研究所, 助教 (70419464)

Research Collaborator KATO Nobuo  大阪大学, 産業科学研究所, 教授 (50150537)
SAWADA Shinjiro  大阪大学, 大学院・理学研究科, 博士後期課程
Project Period (FY) 2010 – 2012
Project Status Completed (Fiscal Year 2012)
Budget Amount *help
¥3,900,000 (Direct Cost: ¥3,000,000、Indirect Cost: ¥900,000)
Fiscal Year 2012: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2011: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2010: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Keywords転写制御 / バイオテクノロジー / 核酸 / 遺伝子 / 有機化学 / アゾベンゼン
Research Abstract

We synthesized a hairpin-type peptide nucleic acid-AZO(hairpin-type PNA-AZO) that tethers a Watson-Crick strand and a Hoogsteen strand with visible light-sensitive azobenzene linkers. We confirmed the azobenzene linkers enhanced the affinity to its complementary DNA sequence and afforded a 1;1 complex formation with its target DNA sequence. Visible light irradiation to the hairpin-type PNA-AZO altered its binding property to the target DNA and thetrans-isoform exhibited higher binding affinity compared to the cis-isoform. We further examined if hairpin-type-PNA-AZO can regulate transcription of plasmid encoding hemagglutinine(HA) protein of influenza A/H1N1 virus and green fluorescence protein(GFP) of Aequorea victoria in HeLa cell by fluorescence microscopy. As a result, the trans-form of hairpin-type PNA-AZO reduced the expression of HA-GFP protein in cells, while the cis-form didn’t interfer the expression. From these results, we can regulatetranscription of DNA in cells by controlling the configuration of azobenzene unit of hairpin-type PNA-AZO via visible light irradiation.

Report

(4 results)
  • 2012 Annual Research Report   Final Research Report ( PDF )
  • 2011 Annual Research Report
  • 2010 Annual Research Report
  • Research Products

    (25 results)

All 2013 2012 2011 2010 Other

All Journal Article (6 results) (of which Peer Reviewed: 5 results) Presentation (18 results) Patent(Industrial Property Rights) (1 results)

  • [Journal Article] Sequence-specific and visual identification of influenza virus gene by azobenzene-tethered bis-peptide nucleic acid2013

    • Author(s)
      K. Kaihatsu, S. Sawada, S. Nakamura, T. Nakaya, T. Yasunaga, N. Kato
    • Journal Title

      PLoS ONE

      Volume: 8 Issue: 5 Pages: e64017-e64017

    • DOI

      10.1371/journal.pone.0064017

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Sequence-specific and visual identification of influenza virus gene by azobenzene-tethered bis-peptide nucleic acid2013

    • Author(s)
      Kunihiro Kaihatsu
    • Journal Title

      PLoS ONE

      Volume: 8 Pages: 1-1

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Synthesis and application of visible light sensitive azobenzene2012

    • Author(s)
      S. Sawada, N. Kato, K. Kaihatsu
    • Journal Title

      Current Pharm. Bio

      Volume: 13 Pages: 2642-8

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Synthesis and application of visible light sensitive azobenzene2012

    • Author(s)
      Shinjiro Sawada
    • Journal Title

      Current Pharmaceutical Biotechnology

      Volume: 13 Pages: 2642-2648

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Genome Specific Diagnosis of Influenza Virus Strains by Hairpin-type Peptide Nucleic Acid2011

    • Author(s)
      K. Kaihatsu, N. Kato
    • Journal Title

      Antiviral Res

      Volume: Vol. 90

    • Related Report
      2012 Final Research Report
  • [Journal Article] Synthesis and application of visible light sensitive azobenzene

    • Author(s)
      S.Sawada, N.Kato, K.Kaihatsu
    • Journal Title

      Current Pharmaceutical and Biology

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Presentation] ウイルスゲノムの迅速診断を目指した新規三重鎖形成型ペプチド核酸の開発2013

    • Author(s)
      澤田慎二郎、加藤修雄、開發邦宏
    • Organizer
      日本化学会第92 春季年会(2012)
    • Place of Presentation
      慶応大学、横浜市
    • Year and Date
      2013-03-27
    • Related Report
      2012 Final Research Report
  • [Presentation] ウイルスゲノムの迅速診断を目指した新規三重鎖形成型ペプチド核酸の開発2012

    • Author(s)
      澤田慎二郎、加藤修雄、開發邦宏
    • Organizer
      日本化学会第92春季年会(2012)
    • Place of Presentation
      慶応大学、横浜市
    • Year and Date
      2012-03-27
    • Related Report
      2011 Annual Research Report
  • [Presentation] ペプチド核酸の DNA、 RNA 識別に及ぼす化学修飾の影響2012

    • Author(s)
      開發邦宏、澤田慎二郎、早矢仕恬子、加藤修雄
    • Organizer
      第9回バイオオプティクス研究会
    • Place of Presentation
      山口大学、山口県
    • Related Report
      2012 Final Research Report
  • [Presentation] ペプチド核酸を用いたインフルエンザウイルスの効率的増殖阻害2012

    • Author(s)
      開發邦宏、菅野尭、澤田慎二郎、中村昇太、後藤直久、安永照雄、中屋隆明、加藤修雄
    • Organizer
      アンチセンス・遺伝子・デリバリーシンポジウム 2012
    • Place of Presentation
      仙台市民会館、宮城県
    • Related Report
      2012 Final Research Report
  • [Presentation] Diagnosis of influenza viruses by peptide nucleic acid-modified with a novel intercalator2012

    • Author(s)
      Kunihiro Kaihatsu
    • Organizer
      25th International Symposium of Antiviral Research
    • Place of Presentation
      Hotel Royton Sapporo, Hokkaido
    • Related Report
      2012 Annual Research Report
  • [Presentation] ペプチド核酸を用いたインフルエンザウイルスの効率的増殖阻害2012

    • Author(s)
      開發 邦宏
    • Organizer
      アンチセンス・遺伝子・デリバリーシンポジウム2012
    • Place of Presentation
      仙台市民会館、宮城県
    • Related Report
      2012 Annual Research Report
  • [Presentation] インターカレーター修飾ペプチド核酸によるDNAの1塩基変異識別2012

    • Author(s)
      早矢仕 恬子
    • Organizer
      第6回バイオ関連化学会
    • Place of Presentation
      北海道大学、北海道
    • Related Report
      2012 Annual Research Report
  • [Presentation] Identification and inhibition of influenza virus genome replication by a peptide nucleic acid2012

    • Author(s)
      Kunihiro Kaihatsu
    • Organizer
      The 39th International Symposium on Nucleic Acids Chemistry
    • Place of Presentation
      名古屋大学、愛知県
    • Related Report
      2012 Annual Research Report
  • [Presentation] ペプチド核酸のDNA、 RNA識別に及ぼす化学修飾の影響2012

    • Author(s)
      開發 邦宏
    • Organizer
      第9回バイオオプティクス研究会
    • Place of Presentation
      山口大学、山口県
    • Related Report
      2012 Annual Research Report
  • [Presentation] High sensitive detection of virus genome RNA by azobenzene linked bis-peptide nucleic acid2011

    • Author(s)
      S. Sawada, N. Kato, K. Kaihatsu
    • Organizer
      The 38th International Symposium on Nucleic Acid Chemistry
    • Place of Presentation
      Sapporo University, Sapporo City
    • Related Report
      2012 Final Research Report
  • [Presentation] Inhibition of reverse transcription of influenza A virus genome RNA by peptide nucleic acids2011

    • Author(s)
      K. Kaihatsu
    • Organizer
      International Conference & Exhibition on Virology-2011
    • Place of Presentation
      Baltimore, MA, USA
    • Related Report
      2012 Final Research Report
  • [Presentation] Regulation of cellular uptake and duplex DNA displacement by visible sensitive peptide analogue2011

    • Author(s)
      S. Sawada, K. Kaihatsu, N. Kato
    • Organizer
      Th 14thSanken International Symposium, The 9thSanken Nanotechnology Symposium
    • Place of Presentation
      Royal Oak Hotel, Otsu, Japan
    • Related Report
      2012 Final Research Report
  • [Presentation] Inhibition of reverse transcription of influenza A virus genome RNA by peptide nucleic acids2011

    • Author(s)
      開發邦宏
    • Organizer
      International Conference & Exhibition on Virology-2011
    • Place of Presentation
      Baltimore, MA, USA(招待講演)
    • Related Report
      2011 Annual Research Report
  • [Presentation] High sensitive detection of virus genome RNA by azobenzene linked bis-peptide nucleic acid2011

    • Author(s)
      澤田慎二郎、加藤修雄、開發邦宏
    • Organizer
      The 38th International Symposium on Nucleic Acid Chemistry
    • Place of Presentation
      北海道大学、札幌市
    • Related Report
      2011 Annual Research Report
  • [Presentation] Application of peptide nucleic acid for the inhibition and detection of influenza viruses2010

    • Author(s)
      K. Kaihatsu, S. Nakamura, N. Goto, T. Nakaya, T. Yasunaga, N. Kato
    • Organizer
      Pachifichem2010
    • Place of Presentation
      Hawaii, USA
    • Related Report
      2012 Final Research Report
  • [Presentation] Regulation of cellular uptake and duplex DNA displacement by visible sensitive peptide analogue2010

    • Author(s)
      S.Sawada, K.Kaihatsu, N.Kato
    • Organizer
      The 14^<th> Sanken International Symposium, The 9^<th> Sanken Nanotechnology Symposium
    • Place of Presentation
      Royal Oak Hotel, Otsu, Japan
    • Related Report
      2010 Annual Research Report
  • [Presentation] Regulation of cellular uptake and duplex DNA strand displacement by visible light sensitive bis-peptide nucleic acid2010

    • Author(s)
      S.Sawada, K.Kaihatsu, N.Kato
    • Organizer
      PACIFICHEM 2010
    • Place of Presentation
      Hawaiian Convention Center, Honoruru Hawaii, USA
    • Related Report
      2010 Annual Research Report
  • [Presentation] ペプチド核酸を用いたインフルエンザウイルスゲノム診断技術2010

    • Author(s)
      開發邦宏、澤田慎二郎、加藤修雄
    • Organizer
      第7回 バイオオプティクス研究会、理研シンポジウム「蛍光相関分光と情報伝達(7)」合同シンポジウム
    • Place of Presentation
      東京農工大学、調布市、東京都(招待講演)
    • Related Report
      2010 Annual Research Report
  • [Patent(Industrial Property Rights)] アゾベンゼン化合物2012

    • Inventor(s)
      開發邦宏、澤田慎二郎、中村昇太、後藤直久、安永照雄、中屋隆明、加藤修雄
    • Industrial Property Rights Holder
      開發邦宏
    • Industrial Property Number
      2012-081288
    • Filing Date
      2012-03-30
    • Related Report
      2012 Final Research Report 2011 Annual Research Report

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Published: 2010-08-23   Modified: 2019-07-29  

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