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Concerted regulation of chromosome-templated processes by histones and multi-functional transcription factors

Research Project

Project/Area Number 22770003
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeSingle-year Grants
Research Field Genetics/Genome dynamics
Research InstitutionThe University of Tokyo

Principal Investigator

YAMADA Takatomi  東京大学, 大学院・総合文化研究科, 助教 (30451850)

Project Period (FY) 2010 – 2012
Project Status Completed (Fiscal Year 2012)
Budget Amount *help
¥4,160,000 (Direct Cost: ¥3,200,000、Indirect Cost: ¥960,000)
Fiscal Year 2012: ¥910,000 (Direct Cost: ¥700,000、Indirect Cost: ¥210,000)
Fiscal Year 2011: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Fiscal Year 2010: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Keywordsヒストン / 多機能性転写因子 / 染色体
Research Abstract

Chromosomal DNA is a dynamic molecule that is replicated, transcribed, andrecombined, yet it is packaged into a highly condensed structure termed chromatin. We are interested in how, in chromatin environment, these processes are coordinated so that an appropriate reaction occur at an appropriate timing.We used fission yeast as a model organism, and analyzed functions of Atf1-Pcr1 and histones in transcription and homologous recombination. The former is a complex of DNA-binding transcription factors, and the latter is the most abundant protein that constitutes chromatin. Our findings are summarized as follows.(1) We have identified the transcriptional activation domain of Atf1. We also showed that this domain is involved not only in transcription, but also in recombination.(2) We compared histone modification patterns at Atf1-Pcr1 dependent recombination steis and Atf1-Pcr1 dependent transcriptional start site. While recombination was associated with acetylation of histone H3 lyse9 (H3K9ac), transcription was associated with H3K9ac, acetylation of H3lysine14, and trimethylation of H3 lysine4. (3) We also showed that H3K9ac is associated with and is important for recombination, regardless of Atf1-Pcr1 localization.

Report

(4 results)
  • 2012 Annual Research Report   Final Research Report ( PDF )
  • 2011 Annual Research Report
  • 2010 Annual Research Report
  • Research Products

    (20 results)

All 2013 2012 2011 2010

All Journal Article (6 results) (of which Peer Reviewed: 6 results) Presentation (14 results)

  • [Journal Article] Acetylated Histone H3K9 is associated with meiotic recombination hotspots, and plays a role in recombination redundantly with other factors including the H3K4 methylase Set1 in fission yeast2013

    • Author(s)
      Shintaro Yamada, Kunihiro Ohta, andTakatomi Yamada,
    • Journal Title

      Nucleic Acids Research

      Volume: vol.41 Pages: 3504-3517

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Acetylated Histone H3K9 is associated with meiotic recombination hotspots, and plays a role in recombination redundantly with other factors including the H3K4 methylase Set1 in fission yeast2013

    • Author(s)
      Shintaro Yamada
    • Journal Title

      NUcleic Acids Research

      Volume: 41 Pages: 3504-3517

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A central coupler for recombination initiation linking chromosome architecture to S-phase checkpoint2012

    • Author(s)
      Tomoichiro Miyoshi, Masaru Ito, Kazuto Kugou, Shintaro Yamada, Masaki Furuichi, Arisa Oda, Takatomi Yamada, Kouji Hirota, Hisao Masai, and Kunihiro Ohta
    • Journal Title

      Molecular Cell

      Volume: vol.47 Pages: 722-733

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] A Central Coupler for Recombination Initiation Linking Chromosome Architecture to S Phase Checkpoint2012

    • Author(s)
      Tomoichiro Miyoshi
    • Journal Title

      Molecular Cell

      Volume: 47 Pages: 722-733

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] OhtaFission yeast ATF/CREB family protein Atf21 plays important roles in production of normal spores.2011

    • Author(s)
      Tomohiko Morita, Takatomi Yamada, Shintaro Yamada, Kouji Matsumoto, and Kunihiro
    • Journal Title

      Genes to Cells

      Volume: vol.16 Pages: 217-230

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Fission yeast ATF/CREB family protein Atf21 plays important roles in production of normal spores.2011

    • Author(s)
      Tomohiko Morita, Takatomi Yamada, Shintaro Yamada, Kouji Matsumoto, Kunihiro Ohta
    • Journal Title

      Genes to Cells

      Volume: 16 Pages: 217-230

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Presentation] ヒストンによる減数分裂期相同組換えの開始制御機構2012

    • Author(s)
      山田貴富 山田真太郎 藤田侑里香 久郷和人 太田邦史
    • Organizer
      第35回日本分子生物学会年会
    • Place of Presentation
      福岡
    • Related Report
      2012 Final Research Report
  • [Presentation] ヒストンによる減数分裂期相同組換えの開始制御機構2012

    • Author(s)
      山田貴富
    • Organizer
      第35回日本分子生物学会年会
    • Place of Presentation
      福岡国際会議場(福岡県福岡市)
    • Related Report
      2012 Annual Research Report
  • [Presentation] Histone modifications around meiotic recombination hotspot in fission yeast2011

    • Author(s)
      Shintaro Yamada, Kunihiro Ohta, Takatomi Yamada
    • Organizer
      第34回日本分子生物学会
    • Place of Presentation
      横浜パシフィコ横浜
    • Year and Date
      2011-12-15
    • Related Report
      2011 Annual Research Report
  • [Presentation] Histone modifications around meiotic recombination hotspots in fission yeast2011

    • Author(s)
      Takatomi Yamada, Shintaro Yamada, Kunihiro Ohta
    • Organizer
      The EMBO Conference on Meiosis (2^<nd>)
    • Place of Presentation
      イタリアカパシオ/ペストゥム
    • Year and Date
      2011-09-20
    • Related Report
      2011 Annual Research Report
  • [Presentation] 分裂酵母の減数分裂期組換えに関与するヒストン修飾2011

    • Author(s)
      山田真太郎, 山田貴富, 太田邦史
    • Organizer
      第44回酵母遺伝学フォーラム
    • Place of Presentation
      福岡九州大学医学部百年講堂
    • Year and Date
      2011-09-05
    • Related Report
      2011 Annual Research Report
  • [Presentation] modifications around meiotic recombination hotspot in fission yeast2011

    • Author(s)
      Shintaro Yamada, Kunihiro Ohta, andTalkatomi YamadaHistone
    • Organizer
      第34回日本分子生物学会年会
    • Place of Presentation
      横浜
    • Related Report
      2012 Final Research Report
  • [Presentation] modifications around meiotic recombination hotspots in fission yeast2011

    • Author(s)
      Takatomi Yamada, Shintaro Yamada, and Kunihiro OhtaHistone
    • Organizer
      The EMBO Conference on Meiosis (2nd)
    • Place of Presentation
      イタリア カパシオペストゥム
    • Related Report
      2012 Final Research Report
  • [Presentation] 分裂酵母の減数分裂期組換えに関与するヒストン修飾2011

    • Author(s)
      山田真太郎 山 田貴富 太田邦史
    • Organizer
      第44回酵母遺伝学フォーラム
    • Place of Presentation
      福岡
    • Related Report
      2012 Final Research Report
  • [Presentation] 分裂酵母のATF/CREBファミリータンパク質Atf21の機能と特徴2010

    • Author(s)
      山田貴富, 森田智彦, 小澤高嶺, 山田真太郎, 松本幸次, 太田邦史
    • Organizer
      第33回日本分子生物学会 第83回日本生化学会合同大会
    • Place of Presentation
      神戸 ポートアイランド
    • Year and Date
      2010-12-09
    • Related Report
      2010 Annual Research Report
  • [Presentation] 分裂酵母ATF/CREBファミリー転写因子Atf21の機能解析2010

    • Author(s)
      山田貴富, 森田智彦, 山田真太郎, 松本幸次, 太田邦史
    • Organizer
      第43回酵母遺伝学フォーラム
    • Place of Presentation
      奈良 ならまちセンター
    • Year and Date
      2010-09-10
    • Related Report
      2010 Annual Research Report
  • [Presentation] A histone modification pattern around ATF/CREB-dependent meiotic recombination hotspots in fission yeast2010

    • Author(s)
      Takatomi Yamada, Shintaro Yamada, Kunihiro Ohta
    • Organizer
      FASEB Summer Research Conferences, Yeast Chromosome Structure Replication & Segregation
    • Place of Presentation
      米国アリゾナ州ケアフリー
    • Year and Date
      2010-08-11
    • Related Report
      2010 Annual Research Report
  • [Presentation] 分裂酵母のATF/CREBファミリータンパク質Atf21 の機能と特徴2010

    • Author(s)
      山田貴富 森田智彦 小澤高嶺 山田真太郎 松本幸次 太田邦史
    • Organizer
      第33回日本分子生物学会 第 83 回日本生化学会合同大会
    • Place of Presentation
      神戸
    • Related Report
      2012 Final Research Report
  • [Presentation] 分裂酵母ATF/CREB ファミリー転写因子Atf21の機能解析2010

    • Author(s)
      山田貴富 森田智彦 山田真太郎 松本幸次 太田邦史
    • Organizer
      第43回酵母遺伝学フォーラム
    • Place of Presentation
      奈良
    • Related Report
      2012 Final Research Report
  • [Presentation] modification pattern around ATF/CREB-dependent meiotic recombination hotspots in fission yeastFASEB2010

    • Author(s)
      Takatomi Yamada, Shintaro Yamada, andKunihiro OhtaHistone
    • Organizer
      Summer Research Conferences,Yeast Chromosome Structure Replication & Segregation
    • Place of Presentation
      アメリカ アリゾナ州
    • Related Report
      2012 Final Research Report

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Published: 2010-08-23   Modified: 2019-07-29  

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