• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

Phylogenetic origin of Passeriformes, Falconiformes and Gruiformes based on retroposon insertions

Research Project

Project/Area Number 22770080
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeSingle-year Grants
Research Field Biodiversity/Systematics
Research InstitutionTokyo Institute of Technology

Principal Investigator

NISHIHARA Hidenori  東京工業大学, 大学院・生命理工学研究科, 助教 (10450727)

Project Period (FY) 2010 – 2011
Project Status Completed (Fiscal Year 2011)
Budget Amount *help
¥4,160,000 (Direct Cost: ¥3,200,000、Indirect Cost: ¥960,000)
Fiscal Year 2011: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Fiscal Year 2010: ¥2,210,000 (Direct Cost: ¥1,700,000、Indirect Cost: ¥510,000)
Keywords系統 / ゲノム / 進化 / 鳥類 / 転移因子
Research Abstract

Retoropozon insertion analysis was performed to reveal the phylogenetic relationships in Aves by using the whole genomic data of zebrafinch(Taeniopygia guttata) and the BAC sequence of condor. This study found that Raptores are polyphyletic and that divergence of Neoaves ancestor into higher-order lineages occurred in a short period of time. In addition, the phylogenetic analysis of Gruiformes identified a monophyletic clade called "core-group" with five retroposon insertion loci. This study revealed a complicated evolutionary history of Neoaves.

Report

(3 results)
  • 2011 Annual Research Report   Final Research Report ( PDF )
  • 2010 Annual Research Report
  • Research Products

    (17 results)

All 2012 2011 2010 2009

All Journal Article (12 results) (of which Peer Reviewed: 12 results) Presentation (5 results)

  • [Journal Article] Phylogeny of galactolipid synthase homologs together with their enzymatic analyses revealed a possible origin and divergence time for photosynthetic Membrane biogenesis2012

    • Author(s)
      Yuzawa, Y., Nishihara, H., Haraguchi, T., Masuda, S., Shimojima, M., Shimoyama, A., Yuasa, H., Okada, N., and Ohta, H.
    • Journal Title

      DNA Res

      Volume: 19 Pages: 91-102

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Phylogeny of galactolipid synthase homologs together with their enzymatic analyses revealed a possible origin and divergence time for photosynthetic Membrane biogenesis2012

    • Author(s)
      Yuzawa Y, Nishihara H, Haraguchi T, Masuda S, Shimojima M, Shimoyama A, Yuasa H, Okada N, Ohta H
    • Journal Title

      DNA Res

      Volume: 19 Issue: 1 Pages: 91-102

    • DOI

      10.1093/dnares/dsr044

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] B chromosomes have a functional effect on female sex determination in Lake Victoria cichlid fishes2011

    • Author(s)
      Yoshida, K., Terai, Y., Mizoiri, S., Aibara, M., Nishihara, H., Watanabe, M., Kuroiwa, A., Hirai, H., Hirai, Y., Matsuda, Y., and Okada, N.
    • Journal Title

      PLoS Genet

      Volume: 7

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] A Mammalian Conserved Element Derived from SINE Displays Enhancer Properties Recapitulating Satb2 Expression in Early-Born Callosal Projection Neurons2011

    • Author(s)
      Tashiro, K., Teissier, A., Kobayashi, N., Nakanishi, A., Sasaki, T., Yan, K., Tarabykin, V., Vigier, L., Sumiyama, K., Hirakawa, M., Nishihara, H., Pierani, A., and Okada, N
    • Journal Title

      PLoS ONE

      Volume: 6(12)

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Reverse evolution in RH1 for adaptation of cichlids to water depth in Lake Tanganyika2011

    • Author(s)
      Nagai, H., Terai, Y., Sugawara, T., Imai, H., Nishihara, H., Hori, M., and Okada, N.
    • Journal Title

      Mol Biol Evol

      Volume: 28 Pages: 1769-1776

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] A Mammalian Conserved Element Derived from SINE Displays Enhancer Properties Recapitulating Satb2 Expression in Early-Born Callosal Projection Neurons2011

    • Author(s)
      Tashiro K, Teissier A, Kobayashi N, Nakanishi A, Sasaki T, Yan K, Tarabykin V, Vigier L, Sumiyama K, Hirakawa M, Nishihara H, Pierani A, Okada N
    • Journal Title

      PLoS One

      Volume: 6(12) Issue: 12 Pages: e28497-e28497

    • DOI

      10.1371/journal.pone.0028497

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] B chromosomes have a functional effect on female sex determination in lake victoria cichlid fishes2011

    • Author(s)
      Yoshida K, Terai Y, Mizoiri S, Aibara M, Nishihara H, Watanabe M, Kuroiwa A, Hirai H, Hirai Y, Matsuda Y, Okada N
    • Journal Title

      PLoS Genet

      Volume: 7(8) Issue: 8 Pages: e1002203-e1002203

    • DOI

      10.1371/journal.pgen.1002203

    • NAID

      120006627278

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Reverse Evolution in RH1 for adaptation of cichlids to water depth in Lake Tanganyika2011

    • Author(s)
      Nagai, H., Terai, Y., Sugawara, T., Imai, H., Nishihara, H., Hori, M.and Okada, N.
    • Journal Title

      Molecular Biology and Evolution

      Volume: 28(6) Issue: 6 Pages: 1769-1776

    • DOI

      10.1093/molbev/msq344

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Reverse evolution in RH1 for adaptation of cichlids to water depth in Lake Tanganyika.2011

    • Author(s)
      Nagai H, Terai Y, Sugawara T, Imai H, Nishihara H, Hori M, Okada N.
    • Journal Title

      Molecular Biology and Evolution

      Volume: (In press)

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Emergence of mammals by emergency : exaptation2010

    • Author(s)
      Okada, N., Sasaki, T., Shimogori, T., and Nishihara, H.
    • Journal Title

      Genes Cells

      Volume: 15 Pages: 801-812

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Characterization of a novel SINE super family from invertebrates :"Ceph-SINEs" from the genomes of squids and cuttlefish2010

    • Author(s)
      Akasaki, T., Nikaido, M., Nishihara, H., Tsuchiya, K., Segawa, S., and Okada, N.
    • Journal Title

      Gene

      Volume: 454 Pages: 8-19

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Emergence of mammals by emergency : exaptation.2010

    • Author(s)
      Okada N, Sasaki T, Shimogori T, Nishihara H.
    • Journal Title

      Genes to Cells

      Volume: 15 Pages: 801-812

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Presentation] A Mammalian Conserved Element Derived from SINE Displays Enhancer Properties Recapitulating Satb2 Expression in Early-Born Callosal Projection Neurons2012

    • Author(s)
      Hidenori Nishihara
    • Organizer
      The 59th NIBB Conference "NEOCORTICAL ORGANIZATION"
    • Place of Presentation
      Okazaki Conference Center, Okazaki, Aichi
    • Year and Date
      2012-03-12
    • Related Report
      2011 Annual Research Report
  • [Presentation] Functional analysis of the SINE-derived enhancer for Satb2 expression in neocortex2011

    • Author(s)
      西原秀典
    • Organizer
      日本進化学会第13回大会
    • Place of Presentation
      京都大学(京都)
    • Year and Date
      2011-07-31
    • Related Report
      2011 Annual Research Report
  • [Presentation] Molecular functional analysis of the neocortex-specific Satb2 enhancer derived from SINEs : Toward resolution of the evolutionary process of exaptation2011

    • Author(s)
      Hidenori Nishihara
    • Organizer
      SMBE 2011-Annual Meeting of the Society for Molecular Biology and Evolution
    • Place of Presentation
      Kyoto University, Kyoto
    • Year and Date
      2011-07-28
    • Related Report
      2011 Annual Research Report
  • [Presentation] 大陸移動と哺乳類の進化2010

    • Author(s)
      西原秀典、丸山茂徳、岡田典弘
    • Organizer
      日本進化学会
    • Place of Presentation
      東京
    • Year and Date
      2010-08-05
    • Related Report
      2010 Annual Research Report
  • [Presentation] レトロポゾンの挿入パターンを指標としたツル目の系統解析2009

    • Author(s)
      蔵本多恵、西原秀典、岡田典弘
    • Organizer
      日本分子生物学会年会
    • Place of Presentation
      横浜
    • Year and Date
      2009-12-12
    • Related Report
      2011 Final Research Report

URL: 

Published: 2010-08-23   Modified: 2016-04-21  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi