• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

Mechanism of catalytic nitric oxide reduction by membrane-bound nitric oxide reductase : comparison with oxygen reduction reaction

Research Project

Project/Area Number 22770136
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeSingle-year Grants
Research Field Functional biochemistry
Research InstitutionThe Institute of Physical and Chemical Research

Principal Investigator

TOSHA Takehiko  独立行政法人理化学研究所, 城生体金属科学研究室, 研究員 (00548993)

Research Collaborator PISLIAKOV Andrei  独立行政法人理化学研究所, 杉田理論生物化学研究室, 基礎科学特別研究員 (70565770)
ADELROTH Pia  ストックホルム大学, Department of Biochemistry & Biophysics, 准教授
Project Period (FY) 2010 – 2011
Project Status Completed (Fiscal Year 2011)
Budget Amount *help
¥4,290,000 (Direct Cost: ¥3,300,000、Indirect Cost: ¥990,000)
Fiscal Year 2011: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2010: ¥2,730,000 (Direct Cost: ¥2,100,000、Indirect Cost: ¥630,000)
Keywords一酸化窒素 / 金属酵素 / 結晶構造解析 / 生体分子分光 / 膜タンパク質 / プロトンポンプ / ヘム / 呼吸酵素 / 一酸化窒素還元酵素 / 呼吸鎖末端酸化酵素 / X線結晶構造解析 / 共鳴ラマン分光 / 酵素反応機構 / 膜蛋白質 / 反応中間体
Research Abstract

Structures of reduced and CN-bound oxidized nitric oxide reductase(NOR), which is involved in anaerobic respiration chain, were determined by X-ray crystallography. Resonance Raman measurement indicated that the substrate, NO, bound to the active site heme in a bent conformation. The proton transfer mechanism was also examined by molecular dynamics simulation, suggesting the structural factor(s) controlling the catalytic proton transfer in NOR. These findings help us understanding the molecular mechanism of the NO reduction reaction in NOR and the functional conversion from NOR to aerobic respiration enzyme during the molecular evolution.

Report

(3 results)
  • 2011 Annual Research Report   Final Research Report ( PDF )
  • 2010 Annual Research Report
  • Research Products

    (34 results)

All 2012 2011 2010 Other

All Journal Article (14 results) (of which Peer Reviewed: 10 results) Presentation (16 results) Remarks (4 results)

  • [Journal Article] Proton Transfer in the Quinol-dependent Nitric Oxide Reductase from Geobacillus Stearothermophilus during Reduction of Oxygen2012

    • Author(s)
      L. Salomonsson, J. Reimann, T. Tosha, N. Krause, N. Gonska, Y. Shiro and P. Adelroth
    • Journal Title

      Biochim. Biophys. Acta

      Volume: (印刷中)

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] 一酸化窒素還元酵素の結晶構造から見えてきた呼吸酵素の機能変換2012

    • Author(s)
      日野智也,當舎武彦,城宜嗣
    • Journal Title

      生物物理

      Volume: (印刷中)

    • NAID

      10030494649

    • Related Report
      2011 Final Research Report
  • [Journal Article] Crystal Structure of Quinol-Dependent Nitric Oxide Reductase from Geobacillus Stearothermophilus2012

    • Author(s)
      Y. Matsumoto, T. Tosha, A. V. Pisliakov, T. Hino, H. Sugimoto, S. Nagano, Y. Sugita and Y. Shiro
    • Journal Title

      Nat. Struct. Mol. Biol

      Volume: 19 Pages: 238-245

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Structural Basis for Nitrous Oxide Generation by Bacterial Nitric Oxide Reductases2012

    • Author(s)
      Y. Shiro, H. Sugimoto, T. Tosha, S. Nagano and T. Hino
    • Journal Title

      Phil. Trans. Royal Soc. B

      Volume: 367 Pages: 1195-1203

    • Related Report
      2011 Final Research Report
  • [Journal Article] Molecular Structure and Function of Bacterial Nitric Oxide Reductase2012

    • Author(s)
      T. Hino, S. Nagano, H. Sugimoto, T. Tosha and Y. Shiro
    • Journal Title

      Biochim. Biophys. Acta

      Volume: 1817 Pages: 680-687

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Ferritin Protein Nanocage Ion Channels : Gating by N-terminal Extensions2012

    • Author(s)
      T.Tosha, R.K.Behera, H.-L.Ng, O.Bhattasali, T.Alber, E.C.Theil
    • Journal Title

      The Journal of Biological Chemistry

      Volume: (印刷中) Issue: 16 Pages: 13016-13025

    • DOI

      10.1074/jbc.m111.332734

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 一酸化窒素還元酵素の結晶構造から見えてきた呼吸酵素の機能変換2012

    • Author(s)
      日野智也、當舎武彦、城宜嗣
    • Journal Title

      生物物理

      Volume: (印刷中)

    • NAID

      10030494649

    • Related Report
      2011 Annual Research Report
  • [Journal Article] Molecular Structure and Function of Bacterial Nitric Oxide Reductase2012

    • Author(s)
      T.Hino, S.Nagano, H.Sugimoto, T.Tosha, Y.Shiro
    • Journal Title

      Biochimica et Biophysica Acta-Bioenergetics

      Volume: (印刷中)

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Crystal Structure of Quinol-Dependent Nitric Oxide Reductase from Geobacillus stearithermophilus2012

    • Author(s)
      Y.Matsumoto, T.Tosha, A.V.Pisliakov, T.Hino, H.Sugimoto, S.Nagano, Y.Sugita, Y.Shiro
    • Journal Title

      Nat.Strl.Mol.Biol.

      Volume: 19 Issue: 2 Pages: 238-245

    • DOI

      10.1038/nsmb.2213

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structural Basis for Nitrous Oxide Generation by Bacterial Nitric Oxide Reductases2011

    • Author(s)
      Y.Shiro, H.Sugimoto, T.Tosha, S.Nagano, T.Hino
    • Journal Title

      Philosophical Transactions of the Royal Society B

      Volume: 00 Issue: 1593 Pages: 1-9

    • DOI

      10.1098/rstb.2011.0310

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Moving Iron Through Ferritin Protein Nanocages Depends on Residues Throughout Each Four α-Helix Bundle Subunit2011

    • Author(s)
      S.Haldar, L.E.Bevers, T.Tosha, E.C.Theil
    • Journal Title

      The Journal of Biological Chemistry

      Volume: 286 Issue: 29 Pages: 25620-25627

    • DOI

      10.1074/jbc.m110.205278

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] CD and MCD Spectroscopic Studies of the Two Dps Mini-ferritin Proteins from B.Anthracis : Role of O_2 and H_2O_2 Substrates in Reactivity of the Di-iron Catalytic Centers2010

    • Author(s)
      J.K.Schwartz, et al.
    • Journal Title

      Biochemistry

      Volume: 49 Pages: 10516-10525

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Moving Metal Ions Through Ferritin Protein Nanocages from Three-fold Pores to Catalytic Sites2010

    • Author(s)
      T.Tosha, et al.
    • Journal Title

      J.Am.Chem.Soc.

      Volume: 132 Pages: 14562-14569

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Recovering Iron from Caged Ferric Oxide Nanominerals in Ferritin

    • Author(s)
      S.Haldar
    • Journal Title

      Indian J.Chem.Sect.A

      Volume: (印刷中)

    • Related Report
      2010 Annual Research Report
  • [Presentation] Quinol-dependent Nitric Oxide Reductase : A Key Enzyme in the Molecular Evolution of Respiratory Enzymes2011

    • Author(s)
      T.Tosha
    • Organizer
      Theil Fest
    • Place of Presentation
      Children's Hospital Research Institute, California, USA(招待講演)
    • Year and Date
      2011-09-17
    • Related Report
      2011 Annual Research Report
  • [Presentation] Functional Role of Ca Ion in Nitric Oxide Reductase from Geobacillus Stearother mophilus2011

    • Author(s)
      T.Tosha, Y.Matsumoto, S.Nagano, Y.Shiro
    • Organizer
      15th International Conference on Biological Inorganic Chemistry
    • Place of Presentation
      University of British Columbia, Vancouver, BC, Canada(口頭)
    • Year and Date
      2011-08-09
    • Related Report
      2011 Annual Research Report
  • [Presentation] 金属蛋白質における構造機能相関:蛋白質ならではの機能制御機構2011

    • Author(s)
      當舎武彦
    • Organizer
      錯体化学若手の会夏の学校2011
    • Place of Presentation
      石川県羽咋市(招待講演)
    • Year and Date
      2011-08-01
    • Related Report
      2011 Annual Research Report
  • [Presentation] Structural basis for molecular evolution in respiratory enzymes : from NO reductase to O2 reductase2011

    • Author(s)
      T. Tosha
    • Organizer
      Mini Symposium on Energy Conversion in Bacteria
    • Place of Presentation
      Stockholm, Sweden
    • Year and Date
      2011-06-16
    • Related Report
      2011 Final Research Report
  • [Presentation] Structural basis for molecular evolution in respiratory enzymes : from NO reductase to O_2 reductase2011

    • Author(s)
      T.Tosha
    • Organizer
      Mini Symposium on Energy Conversion in Bacteria
    • Place of Presentation
      Stockholm University, Stockholm, Sweden(口頭)
    • Year and Date
      2011-06-16
    • Related Report
      2011 Annual Research Report
  • [Presentation] 緑膿菌由来シアン化型一酸化窒素還元酵素のX線結晶構造解析2011

    • Author(s)
      佐藤希美,當舎武彦,日野智也,杉本宏,左子芳彦,城宜嗣
    • Organizer
      平成23年度日本結晶学会
    • Place of Presentation
      札幌
    • Related Report
      2011 Final Research Report
  • [Presentation] Spectroscopic characterization of the ferrous-NO form as a model of active species using Zn-substituted bacterial nitric oxide reductase2011

    • Author(s)
      N. Okada, T. Tosha, and Y. Shiro
    • Organizer
      第49回日本生物物理学会年会
    • Place of Presentation
      兵庫
    • Related Report
      2011 Final Research Report
  • [Presentation] Functional Role of Ca Ion in Nitric Oxide Reductase from Geobacillus Stearothermophilus2011

    • Author(s)
      T. Tosha, Y. Matsumoto, S. Nagano, and Y. Shiro
    • Organizer
      15th International Conference on Biological Inorganic Chemistry
    • Place of Presentation
      Vancouver, Canada
    • Related Report
      2011 Final Research Report
  • [Presentation] 金属蛋白質における構造機能相関:蛋白質ならではの機能制御機構2011

    • Author(s)
      當舎武彦
    • Organizer
      錯体化学若手の会夏の学校2011
    • Place of Presentation
      羽咋
    • Related Report
      2011 Final Research Report
  • [Presentation] Quinol and Ca Binding Sites in Bacterial Nitric Oxide Reductase2010

    • Author(s)
      T.Tosha
    • Organizer
      Pacifichem 2010
    • Place of Presentation
      米国、ハワイ、ホノルル
    • Year and Date
      2010-12-17
    • Related Report
      2010 Annual Research Report
  • [Presentation] 呼吸酵素における分子進化の構造基盤2010

    • Author(s)
      當舎武彦
    • Organizer
      分子アンサンブル2010
    • Place of Presentation
      埼玉県和光市
    • Year and Date
      2010-11-17
    • Related Report
      2010 Annual Research Report
  • [Presentation] Construction of E.coli overexpression system for membrane-bound bacterial nitric oxide reductase2010

    • Author(s)
      T.Tosha
    • Organizer
      第48回日本生物物理学会年会
    • Place of Presentation
      仙台市
    • Year and Date
      2010-09-22
    • Related Report
      2010 Annual Research Report
  • [Presentation] 膜結合型一酸化窒素還元酵素におけるカルシウム結合部位の同定とその機能的役割2010

    • Author(s)
      當舎武彦
    • Organizer
      第10回日本蛋白質科学会
    • Place of Presentation
      札幌市
    • Year and Date
      2010-06-17
    • Related Report
      2010 Annual Research Report
  • [Presentation] Quinol and Ca Binding Sites in Bacterial Nitric Oxide Reductase2010

    • Author(s)
      T. Tosha, Y. Matsumoto, S. Nagano, and Y. Shiro
    • Organizer
      Pacifichem2010
    • Place of Presentation
      Hawaii, USA
    • Related Report
      2011 Final Research Report
  • [Presentation] Construction of E. coli overexpression system for membrane-bound bacterial nitric oxide reductase2010

    • Author(s)
      T. Tosha, A. Kohara, Y. Shiro
    • Organizer
      第48回日本生物物理学会年会
    • Place of Presentation
      東北大学
    • Related Report
      2011 Final Research Report
  • [Presentation] 膜結合型一酸化窒素還元酵素におけるカルシウム結合部位の同定とその機能的役割2010

    • Author(s)
      當舎武彦,松本悠史,永野真吾,城宜嗣
    • Organizer
      第10回日本蛋白質科学会年会
    • Place of Presentation
      札幌
    • Related Report
      2011 Final Research Report
  • [Remarks] 新着レビュー(発表論文37)松本悠史,當舎武彦,城宜嗣"キノール依存型一酸化窒素還元酵素の結晶構造からみた呼吸酵素の分子進化"

    • URL

      http://first.lifesciencedb.jp/archives/4335#more-4335

    • Related Report
      2011 Final Research Report
  • [Remarks] 理化学研究所プレスリリース"プロトンの通り道から呼吸酵素の起源にせまる-立体構造比較から呼吸酵素の分子進化を推測可能に-"

    • URL

      http://www.riken.jp/r-world/info/release/press/2012/120123/index.html

    • Related Report
      2011 Final Research Report
  • [Remarks]

    • URL

      http://www.riken.jp/r-word/info/release/press/2012/120123/detail.html

    • Related Report
      2011 Annual Research Report
  • [Remarks]

    • URL

      http://www.spring8.or.jp/ja/news_publications/press_release/2012/120123

    • Related Report
      2011 Annual Research Report

URL: 

Published: 2010-08-23   Modified: 2016-04-21  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi