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Electron crystallographic analysis of two dimensional crystals of membrane proteins maintaining proton gradient

Research Project

Project/Area Number 22770147
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeSingle-year Grants
Research Field Biophysics
Research InstitutionNagoya University (2012-2013)
Kyoto University (2010-2011)

Principal Investigator

TANI Kazutoshi  名古屋大学, 細胞生理学研究センター, 特任准教授 (20541204)

Co-Investigator(Renkei-kenkyūsha) FUJIYOSHI Yoshinori  名古屋大学, 細胞生理学研究センター, 特任教授 (80142298)
ABE Kazuhiro  名古屋大学, 細胞生理学研究センター, 助教 (60596188)
Project Period (FY) 2010-04-01 – 2014-03-31
Project Status Completed (Fiscal Year 2013)
Budget Amount *help
¥4,420,000 (Direct Cost: ¥3,400,000、Indirect Cost: ¥1,020,000)
Fiscal Year 2013: ¥650,000 (Direct Cost: ¥500,000、Indirect Cost: ¥150,000)
Fiscal Year 2012: ¥910,000 (Direct Cost: ¥700,000、Indirect Cost: ¥210,000)
Fiscal Year 2011: ¥910,000 (Direct Cost: ¥700,000、Indirect Cost: ¥210,000)
Fiscal Year 2010: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Keywords高分解能電子顕微鏡解析 / 電子線結晶学 / 二次元結晶 / アクアポリン / aquaporin-4 / H+,K+-ATPase / 膜タンパク質 / 構造生物学 / 電子顕微鏡 / 三次元構造 / 水チャネル / アクアポリン-4 / H+, K+-ATPase / H+K+-ATPase
Research Abstract

Our developed software package for electron crystallography is very powerful and effective to determine three dimensional structures of membrane proteins reconstituted into lipid bilayers including aquaporin-4 and gastric H+,K+-ATPase. Using electron crystallography of two-dimensional crystals, we could elucidate their structures and conformational changes during molecular passages.

Report

(5 results)
  • 2013 Annual Research Report   Final Research Report ( PDF )
  • 2012 Annual Research Report
  • 2011 Annual Research Report
  • 2010 Annual Research Report
  • Research Products

    (46 results)

All 2014 2013 2012 2011 2010 Other

All Journal Article (26 results) (of which Peer Reviewed: 26 results,  Open Access: 1 results,  Acknowledgement Compliant: 1 results) Presentation (11 results) (of which Invited: 1 results) Book (3 results) Remarks (6 results)

  • [Journal Article] Crystal structure of a claudin provides insight into the architecture of tight junctions2014

    • Author(s)
      H. Suzuki, T. Nishizawa, K. Tani, Y. Yamazaki, A. Tamura, R. Ishitani, N. Dohmae, S. Tsukita, O. Nureki and Y. Fujiyoshi
    • Journal Title

      Science

      Volume: 344 Pages: 304-307

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Three-dimensional structure of bovine heart NADH : ubiquinone oxidoreductase (complex I) by electron microscopy of a single negatively stained two-dimensional crystal2014

    • Author(s)
      S. Shimada, K. S-Itoh, S. Amano, Y. Akira, A. Miyazawa, T. Tsukihara, K. Tani, C. Gerle and S. Yoshikawa
    • Journal Title

      Microscopy

      Volume: 63 Pages: 167-174

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Water channel structures analysed by electron crystallography2014

    • Author(s)
      K. Tani and Y. Fujiyoshi
    • Journal Title

      Biochim. Biophys. Acta

      Volume: 1840 Pages: 1605-1613

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Crystal structure of a claudin provides insight into the architecture of tight junctions2014

    • Author(s)
      Suzuki H, Nishizawa T, Tani K, Yamazaki Y, Tamura A, Ishitani R, Dohmae N, Tsukita S, Nureki O, Fujiyoshi Y
    • Journal Title

      Science

      Volume: 344 Issue: 6181 Pages: 304

    • DOI

      10.1126/science.1248571

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Three-dimensional structure of bovine heart NADH:ubiquinone oxidoreductase (complex I) by electron microscopy of a single negatively stained two-dimensional crystal2014

    • Author(s)
      S. Shimada
    • Journal Title

      Microscopy

      Volume: 63 Issue: 2 Pages: 167-174

    • DOI

      10.1093/jmicro/dft082

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Water channel structures analysed by electron crystallography2014

    • Author(s)
      K.Tani
    • Journal Title

      Biochim. Biophys. Acta.

      Volume: 1840 Issue: 5 Pages: 1605-1613

    • DOI

      10.1016/j.bbagen.2013.10.007

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Two-dimensional crystallization of intact F-ATP synthase isolated from bovine heart mitochondria2013

    • Author(s)
      S. Maeda, K. S-Itoh, K. Mieda, M. Yamamoto, Y. Nakashima, Y. Ogasawara, C. Jiko, K. Tani, A. Miyazawa, C. Gerle and S. Yoshikawa
    • Journal Title

      Acta Cryst

      Volume: F69 Pages: 1368-1370

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Carbon sandwich preparation preserves quality of two-dimensional crystals for cryo-electron microscopy2013

    • Author(s)
      F. Yang, K. Abe, K. Tani and Y. Fujiyoshi
    • Journal Title

      Microscopy

      Volume: 62 Pages: 597-606

    • Related Report
      2013 Annual Research Report 2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Two alternative conformations of a voltage-gated sodium channel2013

    • Author(s)
      C. J. Tsai, K. Tani, K. Irie, Y. Hiroaki, T. Shimomura, D. G. McMillan, G. M. Cook, G. F.X. Schertler, Y. Fujiyoshi and X. D. Li
    • Journal Title

      J. Mol. Biol

      Volume: 425 Pages: 4074-4088

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Visualization of two distinct states of disassembly in the bacterial V-ATPase from Thermus Thermophilus2013

    • Author(s)
      K. Tani, C.P. Arthur, M. Tamakoshi, K. Yokoyama, K. Mitsuoka, Y. Fujiyoshi and C. Gerle
    • Journal Title

      Microscopy

      Volume: 62 Pages: 467-474

    • Related Report
      2013 Annual Research Report 2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Strand formation by a trimeric unit repeat of four-transmembrane proteins in Euglena2013

    • Author(s)
      H. Suzuki, Y. Ito, Y. Yamazaki, K. Mineta, M. Uji, K. Abe, K. Tani, Y. Fujiyoshi and S. Tsukita
    • Journal Title

      Nat. Commun

      Volume: 4 Pages: 1-8

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Two-dimensional crystallization of intact F-ATP synthase isolated from bovine heart mitochondria2013

    • Author(s)
      S. Maeda
    • Journal Title

      Acta Cryst.

      Volume: F69 Issue: 12 Pages: 1368-1370

    • DOI

      10.1107/s1744309113029072

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Two alternative conformations of a voltage-gated sodium channel.2013

    • Author(s)
      CJ. Tsai, K. Tani, K. Irie, Y. Hiroaki, T. Shimomura, DG. McMillan, GM. Cook, GFX. Schertler, Y. Fujiyoshi and XD. Li
    • Journal Title

      J. Mol. Biol.

      Volume: 425 Issue: 22 Pages: 4074-4088

    • DOI

      10.1016/j.jmb.2013.06.036

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The four-transmembrane protein IP39 of Euglena forms strands by a trimeric unit repeat2013

    • Author(s)
      Suzuki H. Itoh Y., et al.
    • Journal Title

      Nature communication

      Volume: 4 Issue: 1 Pages: 1-766

    • DOI

      10.1038/ncomms2731

    • Related Report
      2013 Annual Research Report 2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Visualization of two distinct states of disassembly in the bacterial V-ATPase from Thermus thermophilus.2013

    • Author(s)
      K. Tani, C. P. Arthur, M. Tamakoshi, K. Yokoyama, K. Mitsuoka, Y. Fujiyoshi and C. Gerle
    • Journal Title

      Microscopy

      Volume: 62 Issue: 4 Pages: 467-474

    • DOI

      10.1093/jmicro/dft020

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Cryo-EM structure of gastric H+, K+-ATPase with a single occupied cation-binding site2012

    • Author(s)
      K. Abe, K. Tani, T. Friedrich and Y. Fujiyoshi
    • Journal Title

      Proc. Natl. Acad. Sci. U.S.A.

      Volume: 109 Pages: 18401-18406

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Cryo-EM structure of gastric H+,K+-ATPase with a single occupied cation-binding site.2012

    • Author(s)
      K. Abe, K. Tani, T. Friedrich and Y. Fujiyoshi
    • Journal Title

      Proc. Natl. Acad. Sci. U S A.

      Volume: 109 Issue: 45 Pages: 18401-18406

    • DOI

      10.1073/pnas.1212294109

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Water permeability and characterization of aquaporin-112011

    • Author(s)
      K. Yakata, K. Tani$ and Y. Fujiyoshi ($Corresponding author. )
    • Journal Title

      J. Struct. Biol

      Volume: 174 Pages: 315-320

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Conformational rearrangement of gastric H^+, K^+-ATPase induced by an acid suppressant2011

    • Author(s)
      K. Abe, K. Tani and Y. Fujiyoshi
    • Journal Title

      Nat. Commun

      Volume: 2 Pages: 155-155

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Asymmetric Configurations and N-terminal Rearrangements in Connexin26 Gap Junction Channels2011

    • Author(s)
      A. Oshima, K. Tani, M. M. Toloue, Y. Hiroaki, A. Smock, S. Inukai, A. Cone, B. J. Nicholson, G. E. Sosinsky and Y. Fujiyoshi
    • Journal Title

      J. Mol. Biol

      Volume: 405 Pages: 724-735

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Water permeability and characterization of aquaporin-112011

    • Author(s)
      K.Yakata, K.Tani, Y.Fujiyoshi
    • Journal Title

      JOURNAL OF STRUCTURAL BIOLOGY

      Volume: 174 Issue: 2 Pages: 315-320

    • DOI

      10.1016/j.jsb.2011.01.003

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Conformational rearrangement of gastric H^+,K^+-ATPase induced by an acid suppressant.2011

    • Author(s)
      K.Abe
    • Journal Title

      Nat.Commun.

      Volume: 2

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Influence of the cytoplasmic domains of aquaporin-4 on water conduction and array formation2010

    • Author(s)
      T. Mitsuma, K. Tani, Y. Hiroaki, A. Kamegawa, H. Suzuki, H. Hibino, Y. Kurachi and Y. Fujiyoshi
    • Journal Title

      J. Mol. Biol

      Volume: 402 Pages: 669-681

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Structural and functional characterization of H^+, K^+-ATPase with bound fluorinated phosphate analogs2010

    • Author(s)
      K. Abe, K. Tani and Y. Fujiyoshi
    • Journal Title

      J. Struct. Biol

      Volume: 170 Pages: 60-68

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Influence of the cytoplasmic domains of aquaporin-4 on water conduction and array formation.2010

    • Author(s)
      T.Mitsuma
    • Journal Title

      J.Mol.Biol.

      Volume: 402 Pages: 669-681

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structural and functional characterization of H^+,K^+-ATPase with bound fluorinated phosphate analogs.2010

    • Author(s)
      K.Abe
    • Journal Title

      J.Struct.Biol.

      Volume: 170 Pages: 60-68

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Presentation] Strand-forming polymerization of four-transmembrane proteins in Euglena through intermolecular interactions of tandem trimers2013

    • Author(s)
      伊藤泰行, 鈴木博視, 山崎裕自, 峯田克彦, 氏昌未, 阿部一啓, 谷一寿, 藤吉好則, 月田早智子
    • Organizer
      第62回日本細胞生物学会大会
    • Place of Presentation
      ウィンクあいち
    • Related Report
      2013 Final Research Report
  • [Presentation] Two alternative conformations of a voltage-gated sodium channel2013

    • Author(s)
      谷一寿, Ching-Ju Tsai, 入江克雅, 廣明洋子, 下村拓史, Duncan G. McMillan, Gregory M. Cook, Gebhard X. Schertler, 藤吉好則, Xiao-Dan Li
    • Organizer
      第51回日本生物物理学会年会
    • Place of Presentation
      京都国際会館
    • Related Report
      2013 Final Research Report
  • [Presentation] ELECTRON CRYSTALLOGRAPHY OF EUGLENOID FOUR-TRANSMEMBRANE PROTEIN REVEALED THE LINEAR POLYMERIZATION BY A COMBINATION OF THREE-WAYS OF INTERMOLECULAR INTERACTION2013

    • Author(s)
      鈴木博視, 伊藤泰行, 谷一寿, 山崎裕自, 氏昌未, 峯田克彦, 月田早智子, 藤吉好則
    • Organizer
      Biophysical Society 57th Annual Meeting
    • Place of Presentation
      Philadelphia, PA, USA
    • Related Report
      2013 Final Research Report 2012 Annual Research Report
  • [Presentation] Strand-forming polymerization of four-transmembrane proteins in Euglena through intermolecular interactions of tandem trimers2013

    • Author(s)
      伊藤泰行
    • Organizer
      日本細胞生物学会
    • Place of Presentation
      ウィンクあいち
    • Related Report
      2013 Annual Research Report
  • [Presentation] Two alternative conformations of a voltage-gated sodium channel2013

    • Author(s)
      谷一寿
    • Organizer
      日本生物物理学会
    • Place of Presentation
      京都国際会館
    • Related Report
      2013 Annual Research Report
  • [Presentation] Two alternative inactivated conformations of a voltage-gated sodium channel2013

    • Author(s)
      K. Tani
    • Organizer
      Nagoya Symposium
    • Place of Presentation
      名古屋
    • Related Report
      2012 Annual Research Report
  • [Presentation] Unique properties and conserved conformational changes found in gastric H+,K+-ATPase2013

    • Author(s)
      K. Abe
    • Organizer
      Nagoya Symposium
    • Place of Presentation
      名古屋
    • Related Report
      2012 Annual Research Report
  • [Presentation] Involvement of cytoplasmic construction with aquaporin-4 functions.2010

    • Author(s)
      K.Tani
    • Organizer
      第48回日本生物物理学会
    • Place of Presentation
      東北大学(仙台市)
    • Year and Date
      2010-09-20
    • Related Report
      2010 Annual Research Report
  • [Presentation] Involvement of cytoplasmic construction with aquaporin-4 functions2010

    • Author(s)
      谷一寿, 三潴忠典, 廣明洋子, 亀川亜希子, 鈴木博視, 藤吉好則
    • Organizer
      第48回日本生物物理学会年会
    • Place of Presentation
      東北大学
    • Related Report
      2013 Final Research Report
  • [Presentation] 極低温電子顕微鏡による膜タンパク質の二次元結晶構造解析

    • Author(s)
      谷一寿
    • Organizer
      日本顕微鏡学会
    • Place of Presentation
      幕張メッセ国際会議場
    • Related Report
      2013 Annual Research Report 2013 Final Research Report
  • [Presentation] 結晶構造解析によるチャネルの立体構造と機能の解明

    • Author(s)
      谷一寿
    • Organizer
      第20回連続研究会~次世代ナノ統合シュミレーションソフトウェアの研究開発~
    • Place of Presentation
      福井
    • Related Report
      2013 Final Research Report
    • Invited
  • [Book] 現代生物科学入門 構造機能生物学2011

    • Author(s)
      藤吉好則, 中川敦史, 前田雄一郎, 小田俊郎, 嶋田一夫, 西田紀貴, 谷一寿, 加藤博章
    • Publisher
      岩波書店
    • Related Report
      2013 Final Research Report
  • [Book] STRUCTURE AND INHIBITOR OF WATER CHANNEL IN BRAIN., "Water : The Forgotten Biological Molecule", D. L. Bihan and H. Fukuyama ed2011

    • Author(s)
      Y. Tanimura, K. Tani, H. Suzuki, K. Nishikawa, A. Kamegawa, Y. Hiroaki, Y. Fujiyoshi
    • Publisher
      Pan Stanford Publishing
    • Related Report
      2013 Final Research Report
  • [Book] 構造生物学(現代生物科学入門第3巻)2011

    • Author(s)
      藤吉好則
    • Total Pages
      220
    • Publisher
      岩波書店
    • Related Report
      2010 Annual Research Report
  • [Remarks]

    • URL

      http://www.cespi.nagoya-u.ac.jp/BasicBiol/tani/tani_jp.htm

    • Related Report
      2013 Final Research Report
  • [Remarks] 谷一寿, 第7回(平成25年度)風戸賞受賞

    • Related Report
      2013 Final Research Report
  • [Remarks] 研究内容および成果

    • URL

      http://www.cespi.nagoya-u.ac.jp/BasicBiol/tani/tani_jp.htm

    • Related Report
      2013 Annual Research Report
  • [Remarks] 細胞生理学研究センター

    • URL

      http://www.cespi.nagoya-u.ac.jp

    • Related Report
      2012 Annual Research Report
  • [Remarks] 電子線結晶学の解析プログラム

    • URL

      http://www.cespi.nagoya-u.ac.jp/BasicBiol/software/software.htm

    • Related Report
      2012 Annual Research Report
  • [Remarks]

    • URL

      http://www.researcherid.com/rid/B-3705-2008

    • Related Report
      2011 Annual Research Report

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Published: 2010-08-23   Modified: 2019-07-29  

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