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Single molecule reaction analysis of P-types ATPase using electrochemical fast-scanning atomic force microscopy

Research Project

Project/Area Number 22770148
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeSingle-year Grants
Research Field Biophysics
Research InstitutionUniversity of Tsukuba

Principal Investigator

YOKOKAWA Masatoshi  筑波大学, 数理物質系, 助教 (50447885)

Project Period (FY) 2010 – 2011
Project Status Completed (Fiscal Year 2011)
Budget Amount *help
¥4,290,000 (Direct Cost: ¥3,300,000、Indirect Cost: ¥990,000)
Fiscal Year 2011: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2010: ¥2,730,000 (Direct Cost: ¥2,100,000、Indirect Cost: ¥630,000)
KeywordsP 型ATPase / SERCA / Na+-Pump / 高速AFM / 一分子解析 / 高速原子間力顕微鏡 / P型ATPase / 筋小胞体カルシウムポンプ / ナトリウムポンプ / 一分子反応解析 / 電気生理
Research Abstract

Ion pumps transport specific cationic ion across the biomembrane against a concentration gradient through the energy obtained from ATP hydrolysis. Recent progresses in crystallographic study of sarcoplasmic reticulum Ca^<2+>-ATPase (SERCA), which is one of the best-characterized P-type ATPases, allow us to discuss the transport mechanisms involving dynamical structural changes of P-type ATPases.
In this study, we constructed a novel method to analyze molecular reaction of P-type ATPase at a single molecular level and real time scale using a newly developed fast-scanning atomic force microscopy. Using the system, we succeeded to observe single molecule of SERCA and plasma membrane sodium pump act as a pumping machine by direct detection of their repeatedly up-and-down conformational changes.

Report

(3 results)
  • 2011 Annual Research Report   Final Research Report ( PDF )
  • 2010 Annual Research Report
  • Research Products

    (12 results)

All 2011 2010 Other

All Journal Article (5 results) (of which Peer Reviewed: 5 results) Presentation (4 results) Book (3 results)

  • [Journal Article] Protein-DNA interactions in high speed AFM : single molecule diffusion analysis of human RAD542011

    • Author(s)
      Sanchez H, Suzuki Y, Yokokawa M, Takeyasu K, Wyman C
    • Journal Title

      Integr. Biol.

      Volume: 3(11) Pages: 1127-34

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Motion of the Ca^<2+>-pump captured2011

    • Author(s)
      Yokokawa M, Takeyasu K
    • Journal Title

      FEBS J

      Volume: 278(17) Issue: 17 Pages: 3025-31

    • DOI

      10.1111/j.1742-4658.2011.08222.x

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Motion of the Ca^<2+>-pump captured2011

    • Author(s)
      Yokokawa M
    • Journal Title

      FEBS J

      Volume: 278 Pages: 3025-31

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Acid-sensing ion channel (ASIC)1a undergoes a height transition in response to acidification2010

    • Author(s)
      Yokokawa M, Carnally SM, Henderson RM, Takeyasu K, Edwardson JM
    • Journal Title

      FEBS Lett

      Volume: 584(14) Issue: 14 Pages: 3107-10

    • DOI

      10.1016/j.febslet.2010.05.050

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Acid-sensing ion channel (ASIC)1a undergoes a height transition in response to acidification2010

    • Author(s)
      Yokokawa M
    • Journal Title

      FEBS Lett.

      Volume: 584 Pages: 3107-10

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Presentation] Coulometric detection of an analyte in a liquid plug using a one-electrode system2011

    • Author(s)
      Ikemoto K, Seki T, Kojima K, Sassa F, Yokokawa M, Suzuki H
    • Organizer
      第28 回「センサ・マイクロマシンと応用システム」シンポジウム
    • Place of Presentation
      タワーホール船堀(東京)
    • Year and Date
      2011-09-26
    • Related Report
      2011 Final Research Report
  • [Presentation] Dual Q-dot transport on microtubule array with polarity defined by nanotracks and microtubule motility control2011

    • Author(s)
      Yokokawa M, Fujimoto F, Kitamura M, Yokokawa R, Kotera H
    • Organizer
      The24^<th> International Conference on Micro Electro Mechanical Systems, Jan
    • Place of Presentation
      Cancun,Mexico
    • Related Report
      2011 Final Research Report
  • [Presentation] Polarity orientation of individual microtubules by nanochannels2010

    • Author(s)
      Yokokawa M, Kitamura M, Yokokawa R, Kotera H
    • Organizer
      第27 回「センサ・マイクロマシンと応用システム」シンポジウム
    • Place of Presentation
      くにびきメッセ(松江)
    • Year and Date
      2010-10-14
    • Related Report
      2011 Final Research Report
  • [Presentation] マイクロ-ナノ構造を用いた微小管の個別極性配向と並列ナノ操作技術の確立2010

    • Author(s)
      横川雅俊,北邨益飛,横川隆司,小寺秀俊
    • Organizer
      第21回化学とマイクロ・ナノシステム研究会
    • Place of Presentation
      東京大学
    • Year and Date
      2010-06-10
    • Related Report
      2011 Final Research Report
  • [Book] Electrochemical microdevices

    • Author(s)
      Yokokawa M, Itoh D, Suzuki H
    • Publisher
      Biochemical Sensors : Mimicking Olfactory and Gustatory Senses.(In press)
    • Related Report
      2011 Final Research Report
  • [Book] Nanotechnology for highly sensitive detections

    • Author(s)
      Yokokawa M, Itoh D, Suzuki H
    • Publisher
      Applications of Nanomaterials in Sensors and Diagnostics. In press
    • Related Report
      2011 Final Research Report
  • [Book] Biological Application of Fast-Scanning Atomic Force Microscopy

    • Author(s)
      Suzuki Y, Yokokawa M, Yoshimura S, Takeyasu K
    • Publisher
      Scanning Probe Microscopy in Nanoscience and Nanotechnology
    • Related Report
      2011 Final Research Report

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Published: 2010-08-23   Modified: 2016-04-21  

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