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Analysis of the mRNA silencing mechanism by small RNA in E. coli

Research Project

Project/Area Number 22770175
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeSingle-year Grants
Research Field Molecular biology
Research InstitutionSuzuka University of Medical Science

Principal Investigator

MORITA Teppei  鈴鹿医療科学大学, 薬学部, 助手 (10444366)

Project Period (FY) 2010 – 2011
Project Status Completed (Fiscal Year 2011)
Budget Amount *help
¥4,290,000 (Direct Cost: ¥3,300,000、Indirect Cost: ¥990,000)
Fiscal Year 2011: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Fiscal Year 2010: ¥2,470,000 (Direct Cost: ¥1,900,000、Indirect Cost: ¥570,000)
Keywords低分子RNA / 遺伝子発現抑制 / 大腸菌 / 塩基対形成 / RNAシャペロン / 遺伝子発現制御
Research Abstract

SgrS is a well-characterized Hfq-binding sRNA. In this project, I tried to define the SgrS region required for translation repression of ptsG mRNA, and to clarify the mechanism by which Hfq promotes the base-pairing between SgrS and ptsG mRNA. The major findings are : 1) SgrS168-181(14 nt) is a minimal base-pair region for translational repression of ptsG mRNA ; 2) the polyU tail of rho-independent terminator is essential for Hfq action ; 3) the subregion between 711 and 750 of RNase E is sufficient for the functional interaction with Hfq to support the rapid degradation of ptsG mRNA.

Report

(3 results)
  • 2011 Annual Research Report   Final Research Report ( PDF )
  • 2010 Annual Research Report
  • Research Products

    (39 results)

All 2011 2010

All Journal Article (9 results) (of which Peer Reviewed: 8 results) Presentation (30 results)

  • [Journal Article] PolyU tail of rho-independent terminator of bacterial small RNAs is essential for Hfq action2011

    • Author(s)
      Hironori Otaka, Hirokazu Ishikawa, Teppei Morita, and Hiroji Aiba
    • Journal Title

      Proc. Natl. Acad. Sci. USA

      Volume: 108(32) Pages: 13059-13064

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] 原核生物の制御RNA2011

    • Author(s)
      森田鉄兵、饗場弘二
    • Journal Title

      医学のあゆみ

      Volume: 238(5) Pages: 394-399

    • Related Report
      2011 Annual Research Report 2011 Final Research Report
  • [Journal Article] Hfq binding at RhlB-recognition region of RNase E is crucial for the rapid degradation of target mRNAs mediated by sRNAs in E2011

    • Author(s)
      Ikeda, Y., Yagi, M., Morita, T., and Aiba, H
    • Journal Title

      Coli. Mol. Microbiol

      Volume: 79(2) Pages: 419-432

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] RNase E action at a distance : degradation of target mRNAs mediated by an Hfq-binding small RNA in bacteria2011

    • Author(s)
      Morita, T., and Aiba, H
    • Journal Title

      Genes Dev

      Volume: 25(4) Pages: 294-298

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] PolyU tail of rho-independent terminator of bacterial small RNAs is essential for Hfq action2011

    • Author(s)
      Hironori Otaka, Hirokazu Ishikawa, Teppei Morita, Hiroji Aiba
    • Journal Title

      Proc.Natl.Acad.Sci.USA

      Volume: 108(32) Issue: 32 Pages: 13059-13064

    • DOI

      10.1073/pnas.1107050108

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Hfq binding at RhlB-recognition region of RNase E is crucial for the rapid degradation of target mRNAs mediated by sRNAs in E.coli.2011

    • Author(s)
      Ikeda, Y., Yagi, M., Morita, T., Aiba, H.
    • Journal Title

      Mol.Microbiol.

      Volume: 79(2) Pages: 419-432

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] RNase E action at a distance : degradation of target mRNAs mediated by an Hfq-binding small RNA in bacteria.2011

    • Author(s)
      Morita, T., Aiba, H.
    • Journal Title

      Genes Dev.

      Volume: 25(4) Pages: 294-298

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A minimal base-pairing region of a bacterial small RNA SgrS required for translational repression of ptsG mRNA2010

    • Author(s)
      Maki, K., Morita, T., Otaka, H., and Aiba, H
    • Journal Title

      Mol. Microbiol

      Volume: 76(3) Pages: 782-792

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] A minimal base-pairing region of a bacterial small RNA SgrS required for translational repression of ptsG mRNA2010

    • Author(s)
      Maki, K., Morita, T., Otaka, H., Aiba H.
    • Journal Title

      Mol.Microbiol.

      Volume: 76(3) Pages: 782-792

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Presentation] Poly tail of rho-independent terminator of bacterial small RNA acts an essential Hfq-binding site for riboregulation.2011

    • Author(s)
      大鷹弘紀、石川博一、森田鉄兵、饗場弘二
    • Organizer
      The 16^<th> Annual meeting of the RNA society,第13回日本RNA学会総会合同会
    • Place of Presentation
      京都国際会議場(京都)
    • Related Report
      2011 Final Research Report
  • [Presentation] Identification of Hfq binding sites on RNase E in E. coli2011

    • Author(s)
      池田幸樹、八木美江子、森田鉄兵、金井昭夫、饗場弘二
    • Organizer
      The 16^<th> Annual meeting of the RNA society,第13回日本RNA学会総会合同会
    • Place of Presentation
      京都国際会議場(京都)
    • Related Report
      2011 Final Research Report
  • [Presentation] Both polyU tail and the upstream region of rho-independent terminator are required for the functional interaction of SgrS with Hfq2011

    • Author(s)
      石川博一、大鷹弘紀、森田鉄兵、饗場弘二
    • Organizer
      The 16^<th> Annual meeting of the RNA society,第13回日本RNA学会総会合同会
    • Place of Presentation
      京都国際会議場(京都)
    • Related Report
      2011 Annual Research Report 2011 Final Research Report
  • [Presentation] Generation of functional E. coli DicF small RNA and the role of the 3' polyU stretch in Hfq binding2011

    • Author(s)
      森田鉄兵、飯田芳文、饗場弘二
    • Organizer
      The 16^<th> Annual meeting of the RNA society,第13回日本RNA学会総会合同会
    • Place of Presentation
      京都国際会議場(京都)
    • Related Report
      2011 Final Research Report
  • [Presentation] 遺伝子発現制御機構における大腸菌低分子RNA3'末端ポリU配列の役割2011

    • Author(s)
      大鷹弘紀、石川博一、森田鉄兵、饗場弘二
    • Organizer
      第8回21世紀大腸菌研究会
    • Place of Presentation
      ホテル木曽路(長野)
    • Related Report
      2011 Annual Research Report 2011 Final Research Report
  • [Presentation] 大腸菌小分子RNAのHfq作用領域の解析:塩基対形成領域と転写終結領域間の役割2011

    • Author(s)
      石川博一、大鷹弘紀、森田鉄兵、饗場弘二
    • Organizer
      第8回21世紀大腸菌研究会
    • Place of Presentation
      ホテル木曽路(長野)
    • Related Report
      2011 Annual Research Report 2011 Final Research Report
  • [Presentation] 遺伝子発現制御機構における大腸菌低分子RNA3'末端ポリU配列の役割2011

    • Author(s)
      大鷹弘紀、石川博一、森田鉄兵、饗場弘二
    • Organizer
      第5回細菌学若手コロッセウム
    • Place of Presentation
      桂浜荘(高知)
    • Related Report
      2011 Annual Research Report 2011 Final Research Report
  • [Presentation] 大腸菌小分子RNAのHfq作用領域の解析:塩基対形成領域と転写終結領域間の役割2011

    • Author(s)
      石川博一、大鷹弘紀、森田鉄兵、饗場弘二
    • Organizer
      第5回細菌学若手コロッセウム
    • Place of Presentation
      桂浜荘(高知)
    • Related Report
      2011 Annual Research Report 2011 Final Research Report
  • [Presentation] 遺伝子発現制御機構における大腸菌低分子RNA3'末端ポリU配列の役割2011

    • Author(s)
      大鷹弘紀、石川博一、森田鉄兵、饗場弘二
    • Organizer
      RNAフロンティアミーティング
    • Place of Presentation
      あいち健康プラザ(愛知)
    • Related Report
      2011 Final Research Report
  • [Presentation]2011

    • Author(s)
      森田鉄兵、大鷹弘紀、石川博一、饗場弘二
    • Organizer
      第5回日本ゲノム微生物学会若手の会
    • Place of Presentation
      ろうきん研修所富士センター(静岡)
    • Related Report
      2011 Annual Research Report 2011 Final Research Report
  • [Presentation] Poly tail of rho-independent terminator of bacterial small RNA acts an essential Hfq-binding site for riboregulation2011

    • Author(s)
      大鷹弘紀、石川博一、森田鉄兵、饗場弘二
    • Organizer
      The 16^<th> Annual meeting of the RNA society,第13回日本RNA学会総会合同会
    • Place of Presentation
      京都国際会議場(京都)
    • Related Report
      2011 Annual Research Report
  • [Presentation] Identification of Hfq binding sites on RNase E in E.coli2011

    • Author(s)
      池田幸樹、八木美江子、森田鉄兵、金井昭夫、饗場弘二
    • Organizer
      The 16^<th> Annual meeting of the RNA society,第13回日本RNA学会総会合同会
    • Place of Presentation
      京都国際会議場(京都)
    • Related Report
      2011 Annual Research Report
  • [Presentation] Generation of functional E.coli DicF small RNA and the role of the 3' polyU stretch in Hfq bindiag2011

    • Author(s)
      森田鉄兵、飯田芳文、饗場弘二
    • Organizer
      The 16^<th> Annual meeting of the RNA society,第13回日本RNA学会総会合同会
    • Place of Presentation
      京都国際会議場(京都)
    • Related Report
      2011 Annual Research Report
  • [Presentation] 遺伝子発現制御機構における大腸菌低分子RNA3'末端ポリU配列の役割2011

    • Author(s)
      大鷹弘紀、石川博一、森田鉄兵、饗場弘二
    • Organizer
      RNAフロンティアミーティング2011
    • Place of Presentation
      あいち健康プラザ(愛知)
    • Related Report
      2011 Annual Research Report
  • [Presentation] 大腸菌RNase E/Hfqの結合領域の同定2010

    • Author(s)
      池田幸樹、八木美江子、森田鉄兵、饗場弘二
    • Organizer
      第7回21世紀大腸菌研究会
    • Place of Presentation
      熊本県阿蘇郡
    • Related Report
      2011 Final Research Report 2010 Annual Research Report
  • [Presentation] 大腸菌sRNAであるSgrSの機能領域の解析2010

    • Author(s)
      石川博一、大鷹弘紀、森田鉄兵、饗場弘二
    • Organizer
      第7回21世紀大腸菌研究会
    • Place of Presentation
      熊本県阿蘇郡
    • Related Report
      2011 Final Research Report 2010 Annual Research Report
  • [Presentation] Identification of Hfq binding sites onRNase E in E. coli2010

    • Author(s)
      池田幸樹、八木美江子、森田鉄兵、饗場弘二
    • Organizer
      The 11^<th> Asian and Oceanian Conference on Transcription
    • Place of Presentation
      沖縄県国頭郡
    • Related Report
      2011 Final Research Report
  • [Presentation] Implication of spacer length between base-pairing and Hfq-binding region in bacterial small RNA function2010

    • Author(s)
      石川博一、大鷹弘紀、森田鉄兵、饗場弘二
    • Organizer
      The 11^<th> Asian and Oceanian Conference on Transcription
    • Place of Presentation
      沖縄県国頭郡
    • Related Report
      2011 Final Research Report 2010 Annual Research Report
  • [Presentation] SgrS3'末端のポリU配列はRNA抑制機能に重要な役割を果たす2010

    • Author(s)
      大鷹弘紀、石川博一、森田鉄兵、饗場弘二
    • Organizer
      第12回日本RNA学会年会
    • Place of Presentation
      東京都千代田区
    • Related Report
      2011 Final Research Report 2010 Annual Research Report
  • [Presentation] 大腸菌小分子RNAの作用機構の解析:塩基対形成領域とHfq結合領域間の距離の重要性2010

    • Author(s)
      石川博一、大鷹弘紀、森田鉄兵、饗場弘二
    • Organizer
      第12回日本RNA学会年会
    • Place of Presentation
      東京都千代田区
    • Related Report
      2011 Final Research Report 2010 Annual Research Report
  • [Presentation] Heterogeneity of RNA degradosome of Escherichia coli : RNase E forms several distinct complexes with partner proteins2010

    • Author(s)
      池田幸樹、八木美江子、森田鉄兵、饗場弘二
    • Organizer
      International symposium on Biodiversity Sciences 2010
    • Place of Presentation
      愛知県名古屋市
    • Related Report
      2011 Final Research Report
  • [Presentation] Implication of spacer length between base-pairing and Hfq-binding region in bacterial small RNA function2010

    • Author(s)
      石川博一、大鷹弘紀、森田鉄兵、饗場弘二
    • Organizer
      International symposium on Biodiversity Sciences 2010
    • Place of Presentation
      愛知県名古屋市
    • Related Report
      2011 Final Research Report 2010 Annual Research Report
  • [Presentation] The 3' terminator poly-U tract of SgrS plays a crucial role in Hfq-dependent gene silencing2010

    • Author(s)
      大鷹弘紀、石川博一、森田鉄兵、饗場弘二
    • Organizer
      International symposium on Biodiversity Sciences 2010
    • Place of Presentation
      愛知県名古屋市
    • Related Report
      2011 Final Research Report 2010 Annual Research Report
  • [Presentation] 大腸菌小分子RNAであるSgrSの機能解析2010

    • Author(s)
      森田鉄兵、牧貴美香、大鷹弘紀、石川博一、饗場弘二
    • Organizer
      第4回細菌学・若手コロッセウム
    • Place of Presentation
      静岡県伊豆市
    • Related Report
      2011 Final Research Report
  • [Presentation] 大腸菌小分子RNAであるSgrSの機能解析2010

    • Author(s)
      森田鉄兵、牧貴美香、大鷹弘紀、石川博一、饗場弘二
    • Organizer
      第4回日本ゲノム微生物学会若手の会
    • Place of Presentation
      兵庫県神戸市
    • Related Report
      2011 Final Research Report 2010 Annual Research Report
  • [Presentation] Identification of Hfq binding sites on RNase E in E. coli2010

    • Author(s)
      池田幸樹、八木美江子、森田鉄兵、饗場弘二
    • Organizer
      第33回日本分子生物学会年会
    • Place of Presentation
      兵庫県神戸市
    • Related Report
      2011 Final Research Report
  • [Presentation] Identification of Hfq binding sites onRNase E in E.coli2010

    • Author(s)
      池田幸樹、八木美江子、森田鉄兵、饗場弘二
    • Organizer
      The 11^<th> Asian and Oceanian Conference on Transcription
    • Place of Presentation
      沖縄県国頭郡
    • Related Report
      2010 Annual Research Report
  • [Presentation] Heterogeneity of RNA degradosome of Escherichia coli : RNase E forms several distinct complexes with partner proteins2010

    • Author(s)
      池田幸樹、八木美江子、森田鉄兵、饗場弘二
    • Organizer
      International symposium on Biodiversity Sciences2010
    • Place of Presentation
      愛知県名古屋市
    • Related Report
      2010 Annual Research Report
  • [Presentation] 大腸菌小分子RNAであるSgrSの機能解析2010

    • Author(s)
      森田鉄兵、牧貴美香、大鷹弘紀、石川博一、饗場弘二
    • Organizer
      第4回細菌学・若手コロッセウム
    • Place of Presentation
      修善寺(静岡県伊豆市)
    • Related Report
      2010 Annual Research Report
  • [Presentation] Identification of Hfq binding sites on RNase E in E.coli2010

    • Author(s)
      池田幸樹、八木美江子、森田鉄兵、饗場弘二
    • Organizer
      第33回日本分子生物学会年会
    • Place of Presentation
      兵庫県神戸市
    • Related Report
      2010 Annual Research Report

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Published: 2010-08-23   Modified: 2016-04-21  

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