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Small RNA and epigenetic control of the tudor-piwi pathway in the germline

Research Project

Project/Area Number 22770210
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeSingle-year Grants
Research Field Developmental biology
Research InstitutionKyoto University

Principal Investigator

CHUMA Shinichiro  京都大学, 再生医科学研究所, 准教授 (20378889)

Project Period (FY) 2010 – 2011
Project Status Completed (Fiscal Year 2011)
Budget Amount *help
¥4,290,000 (Direct Cost: ¥3,300,000、Indirect Cost: ¥990,000)
Fiscal Year 2011: ¥2,080,000 (Direct Cost: ¥1,600,000、Indirect Cost: ¥480,000)
Fiscal Year 2010: ¥2,210,000 (Direct Cost: ¥1,700,000、Indirect Cost: ¥510,000)
Keywords生殖細胞 / ゲノム / RNA / 発生 / トランスポゾン / トランスポ
Research Abstract

The piwi-tudor pathway is essential for piRNA biogenesis and it acts to suppress retrotransposons in the germline. In this study, we carried out mass spec and high throughput sequencing analyses of the piwi-tudor complex and identified novel factors that function to control retrotransposons in germline stem cells at RNA and epigenetic levels. Genetic and biochemical analyses of a mutant of a mouse piwi revealed(1) an essential and physiological role of the piwi slicer activity in the germline and(2) a complementarity dependent rule required for the slicer activity mediated piRNA biogenesis. In a collaborative work, we characterized piwi pathway operation in an established cell line of spermatogonia and carried out multi-omics analyses. These results provide novel insights into key mechanisms that protect the germline genome from transposon activity.

Report

(3 results)
  • 2011 Annual Research Report   Final Research Report ( PDF )
  • 2010 Annual Research Report
  • Research Products

    (16 results)

All 2012 2011 2010 Other

All Journal Article (11 results) (of which Peer Reviewed: 6 results) Presentation (4 results) Remarks (1 results)

  • [Journal Article] piRNAs and their involvement in male germline development in mice2012

    • Author(s)
      Pillai RS, Chuma S
    • Journal Title

      Dev Growth Differ

      Volume: 54 Issue: 1 Pages: 78-92

    • DOI

      10.1111/j.1440-169x.2011.01320.x

    • Related Report
      2011 Annual Research Report 2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Human PSFconcentrates DNA and stimulates duplexcapture in DMC1-mediated homologous pairing2012

    • Author(s)
      Morozumi Y, Ino R, Takaku M, Hosokawa M, Chuma S, Kurumizaka H.
    • Journal Title

      Nucleic Acids Res

      Volume: 40(7) Pages: 3031-41

    • Related Report
      2011 Final Research Report
  • [Journal Article] Miwi catalysis is required for piRNA amplification-independent LINE1 transposon silencing2011

    • Author(s)
      Reuter M, et al
    • Journal Title

      Nature

      Volume: 480 Issue: 7376 Pages: 264-267

    • DOI

      10.1038/nature10672

    • Related Report
      2011 Annual Research Report 2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Tudor domain containing 7(Tdrd7) isessential for dynamic ribonucleoprotein(RNP) remodeling of chromatoid bodies during spermatogenesis2011

    • Author(s)
      Tanaka T, Hosokawa M, Vagin VV, Reuter M, Hayashi E, Mochizuki AL, Kitamura K, Yamanaka H, Kondoh G, Okawa K, Kuramochi-Miyagawa S, Nakano T, Sachidanandam R, Hannon GJ, Pillai RS, Nakatsuji N, ChumaS.
    • Journal Title

      Proc Natl Acad SciUSA

      Volume: 108(26) Pages: 10579-84

    • Related Report
      2011 Final Research Report
  • [Journal Article] MITOPLD is a mitochondrial protein essential for nuage formation and piRNA biogenesis in the mouse germline2011

    • Author(s)
      Watanabe T, Chuma S, Yamamoto Y, Kuramochi-Miyagawa S, Totoki Y, Toyoda A, Hoki Y, Fujiyama A, Shibata T, Sado T, NoceT, Nakano T, Nakatsuji N, Lin H, Sasaki H.
    • Journal Title

      Dev Cell

      Volume: 20(3) Pages: 364-75

    • Related Report
      2011 Final Research Report
  • [Journal Article] TDRD5 is required forretrotransposon silencing, chromatoidbody assembly, and spermiogenesis in mice2011

    • Author(s)
      Yabuta Y, Ohta H, Abe T, Kurimoto K, Chuma S, Saitou M.
    • Journal Title

      J Cell Biol

      Volume: 192(5) Pages: 781-95

    • Related Report
      2011 Final Research Report
  • [Journal Article] Tudor domain containing 7 (Tdrd7) is essential for dynamic ribonucleoprotein (RNP) remodeling of chromatoid bodies during spermatogenesis2011

    • Author(s)
      Tanaka T, et al
    • Journal Title

      Proc Natl Acad Sci USA

      Volume: 108 Issue: 26 Pages: 10579-10584

    • DOI

      10.1073/pnas.1015447108

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] MITOPLD Is a Mitochondrial Protein Essential for Nuage Formation and piRNA Biogenesis in the Mouse Germline2011

    • Author(s)
      Watanabe T
    • Journal Title

      Dev Cell

      Volume: 20 Pages: 364-375

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] TDRD5 is required for retrotransposon silencing, chromatoid body assembly, and spermiogenesis in mice2011

    • Author(s)
      Yabuta Y
    • Journal Title

      J Cell Biol

      Volume: 192 Pages: 781-795

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] MVH in piRNA processing and gene silencing of retrotransposons2010

    • Author(s)
      Kuramochi-Miyagawa S, Watanabe T, GotohK, Takamatsu K, Chuma S, Kojima-Kita K, Shiromoto Y, Asada N, Toyoda A, Fujiyama A, Totoki Y, Shibata T, Kimura T, Nakatsuji N, Noce T, Sasaki H, Nakano T.
    • Journal Title

      Genes Dev

      Volume: 24(9) Pages: 887-92

    • Related Report
      2011 Final Research Report
  • [Journal Article] MVH in piRNA processing and gene silencing of retrotransposons2010

    • Author(s)
      Kuramochi-Miyagawa S, et al
    • Journal Title

      Genes Dev

      Volume: 24 Pages: 887-892

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Presentation] Germline tudor familygenes, retrotransposon silencing and spermatogenesis in mice2011

    • Author(s)
      Shinichiro Chuma
    • Organizer
      日本分子生物学会第34回年会
    • Place of Presentation
      横浜
    • Year and Date
      2011-12-16
    • Related Report
      2011 Final Research Report
  • [Presentation] Mammalian tudorrelated genes in the male germline2011

    • Author(s)
      Shinichiro Chuma.
    • Organizer
      44th Meeting of SSR
    • Place of Presentation
      Portland
    • Related Report
      2011 Final Research Report
  • [Presentation] Germline tudor genes, germinal granules and spermatogenesis inmice2011

    • Author(s)
      Shinichiro Chuma
    • Organizer
      CSHA conference
    • Place of Presentation
      Suzhou, China
    • Related Report
      2011 Final Research Report
  • [Presentation] Mammalian tudor related genes in the male germline2011

    • Author(s)
      Chuma S
    • Organizer
      44th meeting of society for the study of reproduction
    • Place of Presentation
      Portland, USA(招待講演)
    • Related Report
      2011 Annual Research Report
  • [Remarks]

    • URL

      http://www.frontier.kyoto-u.ac.jp/rc01/index-j.htm

    • Related Report
      2011 Final Research Report

URL: 

Published: 2010-08-23   Modified: 2016-04-21  

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