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A transposon suppressor Dart-cancellar in wild rice

Research Project

Project/Area Number 22780007
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeSingle-year Grants
Research Field Breeding science
Research InstitutionNational Institute for Basic Biology

Principal Investigator

TSUGANE Kazuo  基礎生物学研究所, 多様性生物学研究室, 助教 (50343744)

Project Period (FY) 2010 – 2011
Project Status Completed (Fiscal Year 2011)
Budget Amount *help
¥3,900,000 (Direct Cost: ¥3,000,000、Indirect Cost: ¥900,000)
Fiscal Year 2011: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Fiscal Year 2010: ¥2,080,000 (Direct Cost: ¥1,600,000、Indirect Cost: ¥480,000)
Keywords植物分子育種 / トランスポソン / イネ / 抑制因子 / 野生イネ / DNAトランスポゾン
Research Abstract

Whole rice genome, which transposon content is 35 %, was sequenced with high accuracy and informative for transposon research. An active rice transposon nDart1-0 element was identified as a causative element for the mutable virescent line that shows green sectors in the virescent yellow leaves. The transposition of nonautonomous nDart1-0 element requires transposase supplied from an autonomous aDart1-27 element. An introduced aDart1-27 element from other variety by crossing has kept the active state. However, a hybrid line obtained by interspecific cross between an African wild rice species, Oryza longistaminata, and a mutable virescent line showed the only green leaf phenotype even though it carried both the nDart1-0 and aDart1-27 elements. Genetic analysis indicated the inhibition of nDart1-0 transposition was caused by a factor derived from Oryza longistaminata. It was revealed that the inhibitory factor regulated transposase mRNA in a posttranscriptional manner

Report

(3 results)
  • 2011 Annual Research Report   Final Research Report ( PDF )
  • 2010 Annual Research Report
  • Research Products

    (25 results)

All 2013 2012 2011 2010 Other

All Journal Article (10 results) (of which Peer Reviewed: 10 results) Presentation (11 results) Book (3 results) Remarks (1 results)

  • [Journal Article] Activation and epigenetic regulation of DNA transposon nDart1 in rice2012

    • Author(s)
      C.-H. Eun, K. Takagi, K.-I. Park, M. Maekawa, S. Iida and K. Tsugane
    • Journal Title

      Plant Cell Physiol

      Volume: 53 Issue: 5 Pages: 857-868

    • DOI

      10.1093/pcp/pcs060

    • NAID

      10030654499

    • Related Report
      2011 Annual Research Report 2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] DNA methylation in plants: Relationship with small RNA sandhistonemodi fications, and functions in transposoninactivation2012

    • Author(s)
      aze,H.,Tsugane, K.Kanno, T.And Nishimura,T
    • Journal Title

      Plant Cell Physiol

      Volume: 53 Issue: 5 Pages: 766-784

    • DOI

      10.1093/pcp/pcs008

    • Related Report
      2011 Annual Research Report 2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] DNA methylation in plants : Relationship with small RNAs and histone modifications, and functions in transposon inactivation2012

    • Author(s)
      Saze, H., Tsugane, K., Kanno, T., Nishimura, T.
    • Journal Title

      Plant Cell Physiol

      Volume: (in press)

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Activation and Epigenetic Regulation of DNA Transposon nDart1 in Rice2012

    • Author(s)
      Eun C.-H., Takagi, K., Park, K.I., Maekawa, M, Iida, S.Tsugane, K.
    • Journal Title

      Plant Cell Physiol

      Volume: (In press)

    • NAID

      10030654499

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Examination of transpositional activity of nDart1at different stages of rice development2011

    • Author(s)
      Hayashi-Tsugane, M., Maekawa, M.,Qian, Q., Kobayashi H., Iida, S. and Tsugane, K
    • Journal Title

      Genes Genet Syst

      Volume: 86 Pages: 215-219

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] A rice mutant displaying a heterochronically elongated internode carries a 100 kb deletion.2011

    • Author(s)
      M. Hayashi-Tsugane
    • Journal Title

      J. Genet. Genomics

      Volume: 38 Issue: 3 Pages: 123-128

    • DOI

      10.1016/j.jgg.2011.02.004

    • Related Report
      2011 Annual Research Report 2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Examination of transpositional activity of nDart1 at different stages of rice development.2011

    • Author(s)
      Hayashi-Tsugane, M.
    • Journal Title

      Genes Genet Syst.

      Volume: 86 Pages: 215-219

    • NAID

      10029679006

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A rice mutant displaying a heterochronically elongated internode carries a 100 kb deletion2011

    • Author(s)
      Hayashi-Tsugane, M., Maekawa, M., Kobayashi H., Iida, S., Tsugane, K.
    • Journal Title

      J.Genet.Genomics

      Volume: 38 Pages: 123-128

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Examination of transpositional activity of nDart1 at different stages of rice development2011

    • Author(s)
      Hayashi-Tsugane, M., Maekawa, M., Qian, Q., Kobayashi H., Iida, S., Tsugane, K.
    • Journal Title

      Genes Genet Syst

      Volume: 86 Pages: 215-219

    • NAID

      10029679006

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Transposition and target preferences of an active nonautonomous DNA transposon nDart1 and its relatives belonging to the hAT superfamily in rice2010

    • Author(s)
      K. Takagi, M. Maekawa, K. Tsugane and S. Iida
    • Journal Title

      Mol. Genet. Genomics

      Volume: 284 Issue: 5 Pages: 343-355

    • DOI

      10.1007/s00438-010-0569-9

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Presentation] A transposon suppressor Dart-canceller in the wild rice2013

    • Author(s)
      Kazuo Tsugane, HIdeki Nishimura, Mika Hayashi-Tsugane, Shigeru Iida, Maekawa Masahiko
    • Organizer
      54回日本植物生理学会年会
    • Place of Presentation
      岡山大学
    • Related Report
      2011 Final Research Report
  • [Presentation] Identification of the transposon-tagged gene essential for chloroplast biogenesis in rice2013

    • Author(s)
      Mika Hayashi-Tsugane, Hiroyuki Takahara, NIsar, Ahmed, Eiko Himi, Kyoko Takagi, Shigeru Iida, Maekawa Masahiko, Kazuo Tsugane
    • Organizer
      54回日本植物生理学会年会
    • Place of Presentation
      岡山大学
    • Related Report
      2011 Final Research Report
  • [Presentation] A transposon suppressor Dart-canceller in the wild rice2013

    • Author(s)
      Kazuo Tsugane
    • Organizer
      54回日本植物生理学会年会
    • Place of Presentation
      岡山大学 (岡山県)
    • Related Report
      2011 Annual Research Report
  • [Presentation] Identification of the transposon-tagged gene essential for chloroplast biogenesis in rice2013

    • Author(s)
      Mika Hayashi-Tsugane
    • Organizer
      54回日本植物生理学会年会
    • Place of Presentation
      岡山大学 (岡山県)
    • Related Report
      2011 Annual Research Report
  • [Presentation] イネ内在 性DNAトランスポゾンnDartのエピジ ェネティックな転移活性の制御2012

    • Author(s)
      栂根一夫、ウンチャンホ、高木恭子、栂 根美佳、飯田滋、前川雅彦
    • Organizer
      122回 日本育種学会講演会
    • Place of Presentation
      京都産業大学
    • Related Report
      2011 Final Research Report
  • [Presentation] 野生イネゲノム中の栽培イネトランス ポゾンを抑制する新規因子2012

    • Author(s)
      栂根一夫、栂根美佳、飯田滋、前川雅彦
    • Organizer
      日本遺伝学 会第84回大会
    • Place of Presentation
      九州 大学医学部
    • Related Report
      2011 Final Research Report
  • [Presentation] 野生イネゲノム中の栽培イネトランスポゾンを抑制する新規因子2012

    • Author(s)
      栂根一夫
    • Organizer
      日本遺伝学会第84回大会
    • Place of Presentation
      九州大学 (福岡県)
    • Related Report
      2011 Annual Research Report
  • [Presentation] アザシチジン処理で活性化した自律性因子Dartの特定2011

    • Author(s)
      西村秀希、氷見英子、飯田滋、栂根一夫、前川雅彦
    • Organizer
      122回日本育種学会講演会
    • Place of Presentation
      福井県・福井県立大学
    • Related Report
      2010 Annual Research Report
  • [Presentation] イオンビーム処理によるイネのDNAトランスポゾン、Dartの活性化2011

    • Author(s)
      前川雅彦、西村秀希、氷見英子、飯田滋、栂根一夫
    • Organizer
      122回日本育種学会講演会
    • Place of Presentation
      福井県・福井県立大学
    • Related Report
      2010 Annual Research Report
  • [Presentation] DNAトランスポゾンnDart1挿入により生じたイネ半優性矮化多分げつ変異体の解析2011

    • Author(s)
      栂根(林)美佳、前川雅彦、飯田滋、栂根一夫
    • Organizer
      34回日本分子生物学会年会
    • Place of Presentation
      神奈川県・パシフィコ横浜
    • Related Report
      2010 Annual Research Report
  • [Presentation] イネDNAトランスポゾンnDart1の挿入領域の特徴と利用

    • Author(s)
      栂根一夫、高木恭子、栂根(林)美佳、前川雅彦、飯田滋
    • Organizer
      121回日本育種学会講演会
    • Place of Presentation
      神奈川県・横浜市立大学(東日本大震災により講演会は中止発表は成立)
    • Related Report
      2010 Annual Research Report
  • [Book] Effective contribution of the nDart transposon-tagging system to rice functional genomics2011

    • Author(s)
      Maekawa M, Tsugane K, Iida S
    • Publisher
      Adv Genet Res
    • Related Report
      2011 Final Research Report
  • [Book] Adv Genet Res 42011

    • Author(s)
      Maekawa M.
    • Publisher
      Nova Pub.
    • Related Report
      2011 Annual Research Report
  • [Book] Adv Genet Res 42011

    • Author(s)
      Maekawa M, Tsugane K, Iida S
    • Publisher
      Nova publisher
    • Related Report
      2010 Annual Research Report
  • [Remarks]

    • URL

      http://www.nibb.ac.jp/dart/

    • Related Report
      2011 Final Research Report

URL: 

Published: 2010-08-23   Modified: 2016-04-21  

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