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Substrate recognition of glucosidase II in ER and its related enzymes

Research Project

Project/Area Number 22780082
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeSingle-year Grants
Research Field Applied biochemistry
Research InstitutionHokkaido University

Principal Investigator

OKUYAMA Masayuki  北海道大学, 大学院・農学研究院, 講師 (00344490)

Project Period (FY) 2010 – 2011
Project Status Completed (Fiscal Year 2011)
Budget Amount *help
¥4,030,000 (Direct Cost: ¥3,100,000、Indirect Cost: ¥930,000)
Fiscal Year 2011: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Fiscal Year 2010: ¥2,340,000 (Direct Cost: ¥1,800,000、Indirect Cost: ¥540,000)
Keywordsα-グルコシダーゼ / 基質特異性 / 分子進化 / α-グルコシダーゼII / 立体構造解析 / 部位特異的変異 / 小胞体グルコシダーゼ / タンパク質の分子進化 / 基質認識
Research Abstract

The purpose of this project was to clarify molecular evolution ofα-glucosidases distributed largely in organisms. An.-glucosidase, which hydrolyzesα-1, 3-glucosidic linkage in endoplasmic reticulum, also showed specificity forα-1, 4-glucosidic linkage. Structural studies of an.-glucosidase indicated that the loop structure, which covers the active pocket, was involved in substrate recognition. Trp residue in the active pocket of an yeast.-glucosidase had important role for substrate specificity. Novel.-glucosidase, which preferredα-1, 3-glucosidic linkage, was discovered from bacteria. It seems that an ancestor enzyme originally hadα-1, 3 specificity and its derivatives have acquired various specificity during the molecular evolution. Moreover, it appears that protein with a new function remained in the related family

Report

(3 results)
  • 2011 Annual Research Report   Final Research Report ( PDF )
  • 2010 Annual Research Report
  • Research Products

    (39 results)

All 2012 2011 2010

All Journal Article (11 results) (of which Peer Reviewed: 11 results) Presentation (28 results)

  • [Journal Article] Novel dextranase catalyzing cycloisomaltooligosaccharide-formation and its identification of catalytic amino acids and their functions using chemical rescue approach.2012

    • Author(s)
      Kim YM
    • Journal Title

      J Biol Chem

      Volume: 287 Issue: 24 Pages: 19927-19935

    • DOI

      10.1074/jbc.m111.339036

    • Related Report
      2011 Annual Research Report 2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Chemical constituents and free radical scavenging activity of corn pollen collected from Apis mellifera hives compared to floral corn pollen at Nan, Thailand2012

    • Author(s)
      Chantarudee A, Phuwapraisirisan P, Kimura K, Okuyama M, Mori H, Kimura A, Chanchao C
    • Journal Title

      BMC Complem Altern Med

      Volume: 12 Issue: 1 Pages: 45-45

    • DOI

      10.1186/1472-6882-12-45

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] In vitro antiproliferative/cytotoxic activity on cancer cell lines of a cardanol and a cardol enriched from Thai Apis mellifera propolis2012

    • Author(s)
      Teerasripreecha D, Phuwapraisirisan P, Puthong S, Kimura K, Okuyama M, Mori H, Kimura A, Chanchao C
    • Journal Title

      BMC Complement Altern Med

      Volume: (印刷中) Issue: 1

    • DOI

      10.1186/1472-6882-12-27

    • Related Report
      2011 Annual Research Report 2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Structural elucidation of dextran degradation mechanism by Streptococcus mutans dextranase belonging to glycoside hydrolase family 662012

    • Author(s)
      Suzuki N, Kim YM, Fujimoto Z, Momma M, Okuyama M, Mori H, Funane K, Kimura A
    • Journal Title

      J Biol Chem

      Volume: 287(24) Issue: 24 Pages: 19916-19926

    • DOI

      10.1074/jbc.m112.342444

    • NAID

      120005183151

    • Related Report
      2011 Annual Research Report 2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Function and Structure Studies of GH Family 31 and 97 .ALPHA.-Glycosidases2011

    • Author(s)
      Okuyama M
    • Journal Title

      Bioscience, Biotechnology, and Biochemistry

      Volume: 75 Issue: 12 Pages: 2269-2277

    • DOI

      10.1271/bbb.110610

    • NAID

      10030397269

    • ISSN
      0916-8451, 1347-6947
    • Related Report
      2011 Annual Research Report 2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Crystallization and preliminary crystallographic analysis of dextranase from Streptococcus mutans2011

    • Author(s)
      Suzuki N, Kim YM, Fujimoto Z, Momma M, Kang HK, Funane K, Okuyama M, Mori H,Kimura A
    • Journal Title

      Acta Crystallogr F

      Volume: F67 Issue: 12 Pages: 1542-1544

    • DOI

      10.1107/s1744309111038425

    • NAID

      120003660602

    • Related Report
      2011 Annual Research Report 2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Calcium Ion-Dependent Increase in Thermostability of Dextran Glucosidase from Streptococcus mutans2011

    • Author(s)
      Kobayashi M
    • Journal Title

      Bioscience, Biotechnology, and Biochemistry

      Volume: 75 Issue: 8 Pages: 1557-1563

    • DOI

      10.1271/bbb.110256

    • NAID

      10029591699

    • ISSN
      0916-8451, 1347-6947
    • Related Report
      2011 Annual Research Report 2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Truncation of N- and C-terminal regions of Streptococcus mutans dextranase enhances catalytic activity2011

    • Author(s)
      Kim YM
    • Journal Title

      Appl Microbiol Biotechnol

      Volume: 91 Issue: 2 Pages: 329-339

    • DOI

      10.1007/s00253-011-3201-y

    • Related Report
      2011 Annual Research Report 2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Truncation of N- and C-terminal regions of Streptococcus mutans dextranase enhances catalytic activity2011

    • Author(s)
      Kim YM, et al
    • Journal Title

      Appl.Microbiol.Biotechnol.

      Volume: (掲載決定)

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Suicide Substrate-based Inactivation of Endodextranase by .OMEGA.-Epoxyalkyl .ALPHA.-D-Glucopyranosides2010

    • Author(s)
      Kang HK, Kim YM, Nakai H, Kang MS, Hakamada W, Okuyama M, Mori H, Nishio T, and Kimura A.
    • Journal Title

      Journal of Applied Glycoscience

      Volume: 57 Issue: 4 Pages: 269-272

    • DOI

      10.5458/jag.57.269

    • NAID

      10026967780

    • ISSN
      1344-7882, 1880-7291
    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Suicide substrate-based inactivation of endodextranase by ω-epoxyalky1 α-D-gluco-pyranoside2010

    • Author(s)
      Kang HK, et al
    • Journal Title

      J.Appl.Glycosci.

      Volume: 57 Pages: 269-272

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Presentation] Bacteroides thetaiotaomicron由来.-galactosidaseの求核残基変異酵素が触媒する糖転移反応の解析2012

    • Author(s)
      渡辺健一
    • Organizer
      日本農芸化学会
    • Place of Presentation
      京都女子大学(京都)
    • Year and Date
      2012-03-23
    • Related Report
      2011 Final Research Report
  • [Presentation] Alteration of regioselectivity and synthesis of novel transglycosylation product by mutantα-glucosidase from Schwanniomyces occidentalis2012

    • Author(s)
      Kyung Mo Song
    • Organizer
      日本農芸化学会
    • Place of Presentation
      京都女子大学(京都)
    • Year and Date
      2012-03-23
    • Related Report
      2011 Final Research Report
  • [Presentation] BFunctional implication of amino acid residues in conserved region II of European honeybeeα-glucosidase on substrate specificity, transglucosylation and substrate inhibition2012

    • Author(s)
      Lukana Ngiwsara
    • Organizer
      日本農芸化学会
    • Place of Presentation
      京都女子大学(京都)
    • Year and Date
      2012-03-23
    • Related Report
      2011 Final Research Report
  • [Presentation] Bacteroides thetaiotaomicron由来α-galactosidaseの求核残基変異酵素が触媒する糖転移反応の解析2012

    • Author(s)
      渡辺健一, 他
    • Organizer
      日本農芸化学会
    • Place of Presentation
      京都女子大学(京都)
    • Year and Date
      2012-03-23
    • Related Report
      2011 Annual Research Report
  • [Presentation] Alteration of regioselectivity and synthesis of novel transglycosylation product by mutant alpha-glucosidase from Schwanniomyces occidentalis2012

    • Author(s)
      Kyung Mo Song, 他
    • Organizer
      日本農芸化学会
    • Place of Presentation
      京都女子大学(京都)
    • Year and Date
      2012-03-23
    • Related Report
      2011 Annual Research Report
  • [Presentation] Functional implication of amino acid residues in conserved region II of European honeybee alpha-glucosidase on substrate specificity, transglucosylation and substrate inhibition2012

    • Author(s)
      Lukana Ngiwsara, 他
    • Organizer
      日本農芸化学会
    • Place of Presentation
      京都女子大学(京都)
    • Year and Date
      2012-03-23
    • Related Report
      2011 Annual Research Report
  • [Presentation] 糖質加水分解酵素の機能と構造、日本生化学会北海道支部、日本生物物理学会北海道支部2011

    • Author(s)
      奥山正幸
    • Organizer
      北海道分子生物研究会合同シンポジウム
    • Place of Presentation
      北海道大学理学部大講堂(札幌)
    • Year and Date
      2011-11-11
    • Related Report
      2011 Final Research Report
  • [Presentation] 糖質加水分解酵素の機能と構造2011

    • Author(s)
      奥山正幸
    • Organizer
      日本生化学会北海道支部、日本生物物理学会北海道支部北海道分子生物研究会合同シンポジウム
    • Place of Presentation
      北海道大学理学部大講堂(札幌)
    • Year and Date
      2011-11-11
    • Related Report
      2011 Annual Research Report
  • [Presentation] アノマー反転型トレハラーゼ変異体により合成された新規非還元二糖の構造2011

    • Author(s)
      平内亨
    • Organizer
      日本応用糖質科学会
    • Place of Presentation
      北海道大学学術交流会館(札幌)
    • Year and Date
      2011-09-23
    • Related Report
      2011 Annual Research Report 2011 Final Research Report
  • [Presentation] Production and investigation of recombinantα-glucosidase from Podospora anserina2011

    • Author(s)
      Kyung Mo Song
    • Organizer
      日本応用糖質科学会
    • Place of Presentation
      北海道大学学術交流会館(札幌)
    • Year and Date
      2011-09-23
    • Related Report
      2011 Final Research Report
  • [Presentation] GH family 31に属するAspergillus niger由来α-glucosidaseの鎖長特異性の改変2011

    • Author(s)
      田上貴祥
    • Organizer
      日本応用糖質科学会
    • Place of Presentation
      北海道大学学術交流会館(札幌)
    • Year and Date
      2011-09-23
    • Related Report
      2011 Annual Research Report 2011 Final Research Report
  • [Presentation] Isomaltooligosaccharide 6-α-glucosyltransferaseサブサイト+1変異酵素の機能解析2011

    • Author(s)
      青山泰
    • Organizer
      日本応用糖質科学会
    • Place of Presentation
      北海道大学学術交流会館(札幌)
    • Year and Date
      2011-09-23
    • Related Report
      2011 Final Research Report
  • [Presentation] Dextran glucosidase(DexB)ウォーターパス改変体の機能と構造2011

    • Author(s)
      小林桃子
    • Organizer
      日本応用糖質科学会
    • Place of Presentation
      北海道大学学術交流会館(札幌)
    • Year and Date
      2011-09-23
    • Related Report
      2011 Final Research Report
  • [Presentation] 環状イソマルトオリゴ糖グルカノトランスフェラーゼのβ→αループ2はCI-8の優先的生成に寄与する2011

    • Author(s)
      齋藤みどり
    • Organizer
      日本応用糖質科学会
    • Place of Presentation
      北海道大学学術交流会館(札幌)
    • Year and Date
      2011-09-23
    • Related Report
      2011 Final Research Report
  • [Presentation] Production and investigation of recombinant α-glucosidase from Podospora anserina2011

    • Author(s)
      Kyung Mo Song, 他
    • Organizer
      日本応用糖質科学会
    • Place of Presentation
      北海道大学学術交流会館(札幌)
    • Year and Date
      2011-09-23
    • Related Report
      2011 Annual Research Report
  • [Presentation] Isomaltooligosaccharide 6-α-glucosyltra nsferaseサブサイト+1変異酵素の機能解析2011

    • Author(s)
      青山泰, 他
    • Organizer
      日本応用糖質科学会
    • Place of Presentation
      北海道大学学術交流会館(札幌)
    • Year and Date
      2011-09-23
    • Related Report
      2011 Annual Research Report
  • [Presentation] Dextran glucosidase (DexB)ウォーターパス改変体の機能と構造2011

    • Author(s)
      小林桃子, 他
    • Organizer
      日本応用糖質科学会
    • Place of Presentation
      北海道大学学術交流会館(札幌)
    • Year and Date
      2011-09-23
    • Related Report
      2011 Annual Research Report
  • [Presentation] 環状イソマルトオリゴ糖グルカノトランスフェラーゼのβ→αループ2はCI・8の優先的生成に寄与する2011

    • Author(s)
      粛藤みどり, 他
    • Organizer
      日本応用糖質科学会
    • Place of Presentation
      北海道大学学術交流会館(札幌)
    • Year and Date
      2011-09-23
    • Related Report
      2011 Annual Research Report
  • [Presentation] Improvement of production conditions of recombinant Podospora anserinaα-glucosidase2011

    • Author(s)
      Song Kyung-Mo
    • Organizer
      日本農芸化学会
    • Place of Presentation
      京都女子大(京都)
    • Year and Date
      2011-03-26
    • Related Report
      2011 Final Research Report
  • [Presentation] Improvement of production conditions of recombinant Podospora anserina α-glucosidase2011

    • Author(s)
      Song Kyung-Mo, 他
    • Organizer
      日本農芸化学会平成23年度大会
    • Place of Presentation
      京都女子大(京都市)
    • Year and Date
      2011-03-26
    • Related Report
      2010 Annual Research Report
  • [Presentation] α-グリコシダーゼの機能と構造に関する研究2010

    • Author(s)
      奥山正幸
    • Organizer
      若手研究者のための有機化学札幌セミナー
    • Place of Presentation
      北海道大学(札幌)
    • Year and Date
      2010-10-27
    • Related Report
      2011 Final Research Report
  • [Presentation] α-グリコシダーゼの機能と構造に関する研究2010

    • Author(s)
      奥山正幸
    • Organizer
      若手研究者のための有機化学札幌セミナー
    • Place of Presentation
      北海道大学(札幌市)(招待講演)
    • Year and Date
      2010-10-27
    • Related Report
      2010 Annual Research Report
  • [Presentation] spergillus nigerα-glucosidaseのサブサイト+1の改変2010

    • Author(s)
      田上貴祥
    • Organizer
      日本応用糖質科学会
    • Place of Presentation
      グランシップ静岡(静岡)
    • Year and Date
      2010-09-27
    • Related Report
      2011 Final Research Report
  • [Presentation] α-グリコシダーゼの機能と構造に関する研究2010

    • Author(s)
      奥山正幸
    • Organizer
      日本農芸化学会東北支部・北海道支部合同支部大会
    • Place of Presentation
      東北大学(仙台
    • Year and Date
      2010-09-27
    • Related Report
      2011 Final Research Report
  • [Presentation] α-グリコシダーゼ機能と構造に関する研究2010

    • Author(s)
      奥山正幸
    • Organizer
      日本農芸化学会東北支部・北海道支部合同支部大会
    • Place of Presentation
      東北大学(仙台市)(招待講演)
    • Year and Date
      2010-09-27
    • Related Report
      2010 Annual Research Report
  • [Presentation] Aspergillus niger α-glucosidaseのサブサイト+1の改変2010

    • Author(s)
      田上貴祥, 他
    • Organizer
      日本応用糖質科学会平成22年度大会
    • Place of Presentation
      グランシップ静岡(静岡市)
    • Year and Date
      2010-09-27
    • Related Report
      2010 Annual Research Report
  • [Presentation] α-グリコシダーゼの機能と構造に関する研究2010

    • Author(s)
      奥山正幸
    • Organizer
      日本農芸化学北海道支部大会
    • Place of Presentation
      北海道大学(札幌)
    • Year and Date
      2010-07-23
    • Related Report
      2011 Final Research Report
  • [Presentation] α-グリコシダーゼの機能と構造に関する研究2010

    • Author(s)
      奥山正幸
    • Organizer
      日本農芸化学北海道支部大会
    • Place of Presentation
      北海道大学(札幌市)(招待講演)
    • Year and Date
      2010-07-23
    • Related Report
      2010 Annual Research Report

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Published: 2010-08-23   Modified: 2016-04-21  

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