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Analysis of carbohydrate recognition by Pradimicins, natural small molecules with lectin-like properties

Research Project

Project/Area Number 22780109
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeSingle-year Grants
Research Field Bioproduction chemistry/Bioorganic chemistry
Research InstitutionThe Institute of Physical and Chemical Research

Principal Investigator

NAKAGAWA Yu  独立行政法人理化学研究所, 伊藤細胞制御化学研究室, 専任研究員 (90452284)

Project Period (FY) 2010 – 2011
Project Status Completed (Fiscal Year 2011)
Budget Amount *help
¥4,030,000 (Direct Cost: ¥3,100,000、Indirect Cost: ¥930,000)
Fiscal Year 2011: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Fiscal Year 2010: ¥2,340,000 (Direct Cost: ¥1,800,000、Indirect Cost: ¥540,000)
KeywordsAntibiotic / Carbohydrate recognition / Lectin / Natural product / Pradimicin / Solid-state NMR / Pradimicin A / 抗生物質 / 放線菌 / 糖受容体 / 天然物 / 固体NMR / 凝集 / 固相相互作用解析
Research Abstract

Pradimicins(PRMs) are natural antibiotics that recognize D-mannose(Man) in the presence of Ca^<2+> ion. In this study, a new strategy for analyzing molecular interaction of PRMs with Man in the solid state has been developed. The solid-state NMR analyses of the complexes of PRMs with Man revealed that PRMs bind Man in a Ca^<2+>-mediated manner, and successfully identified the Man binding site of PRMs.

Report

(3 results)
  • 2011 Annual Research Report   Final Research Report ( PDF )
  • 2010 Annual Research Report
  • Research Products

    (17 results)

All 2012 2011 Other

All Journal Article (8 results) (of which Peer Reviewed: 8 results) Presentation (7 results) Remarks (2 results)

  • [Journal Article] Carbohydrate-Binding Molecules with Non-Peptidic Skeletons2012

    • Author(s)
      Nakagawa, Y., and Ito, Y.
    • Journal Title

      Trends Glycosci. Glycotechnol

      Volume: (in press)

    • NAID

      10030975501

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Solid-state NMR analysis of calcium and D-mannose binding of BMY-28864, a water-soluble analogue of pradimicin A2012

    • Author(s)
      Nakagawa, Y., Doi, T., Takegoshi, K., Igarashi, Y., and Ito, Y.
    • Journal Title

      Bioorg. Med. Chem. Lett.

      Volume: 22 Pages: 1038-1041

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Solid-state NMR analysis of calcium and D-mannose binding of BMY-28864, a water-soluble analogue of pradimicin A2012

    • Author(s)
      Nakagawa, Y., et al
    • Journal Title

      Bioorg.Med.Chem.Lett.

      Volume: 22 Issue: 2 Pages: 1040-1043

    • DOI

      10.1016/j.bmcl.2011.11.106

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Carbohydrate-Binding Molecules with Non-Peptidic Skeletons2012

    • Author(s)
      Nakagawa, Y., Ito, Y.
    • Journal Title

      Trends Glycosci.Glycotechnol.

      Volume: 23(In press)

    • NAID

      10030975501

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Mapping of the Primary Mannose-Binding Site of Pradimicin A2011

    • Author(s)
      Nakagawa, Y., Doi, T., Masuda, Y., Takegoshi, K., Igarashi, Y., and Ito, Y.
    • Journal Title

      J. Am. Chem. Soc.

      Volume: 133 Pages: 17485-17493

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Solid-state NMR Spectroscopic Analysis of the Ca^<2+>-dependent Mannose Binding of Pradimicin A2011

    • Author(s)
      Nakagawa, Y., Masuda, Y., Yamada, K., Doi, T., Takegoshi, K., Igarashi, Y., and Ito, Y.
    • Journal Title

      Angew. Chem. Int. Ed.

      Volume: 50 Pages: 6084-6088

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Solid-state NMR spectroscopic analysis of the Ca^<2+>-dependent mannose binding of pradimicin A2011

    • Author(s)
      Nakagawa, Y., Masuda, Y., Yamada, K., Doi, T., Takegoshi, K., Igarashi, Y., Ito, Y.
    • Journal Title

      Angewandte Chemie International Edition

      Volume: 50 Issue: 27 Pages: 6084-6088

    • DOI

      10.1002/anie.201007775

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Mapping of the primary mannose binding site of pradimicin A2011

    • Author(s)
      Nakagawa, Y., Doi, T., Masuda, Y., Takegoshi, K., Igarashi, Y., Ito, Y.
    • Journal Title

      Journal of the American Chemical Society

      Volume: 133 Issue: 43 Pages: 17485-17493

    • DOI

      10.1021/ja207816h

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Presentation] Pradimicin Aの水溶性アナログ・BMY-28864とマンノースとの複合体の固体NMR解析2012

    • Author(s)
      中川優,土井崇嗣,竹腰清乃理,五十嵐康弘,伊藤幸成
    • Organizer
      日本農芸化学会2012年度大会
    • Place of Presentation
      京都
    • Year and Date
      2012-03-24
    • Related Report
      2011 Final Research Report
  • [Presentation] Pradimicin Aの水溶性アナログ・BMY-28864とマンノースとの複合体の固体NMR解析2012

    • Author(s)
      中川優, ほか
    • Organizer
      日本農芸化学会2012年度大会
    • Place of Presentation
      京都女子大学(京都)
    • Year and Date
      2012-03-24
    • Related Report
      2011 Annual Research Report
  • [Presentation] 固体NMRによるPraidimicin Aのマンノース認識機構解析2011

    • Author(s)
      中川優,増田裕一,山田啓太,土井崇嗣,竹腰清乃理,五十嵐康弘,伊藤幸成
    • Organizer
      第53回天然有機化合物討論会
    • Place of Presentation
      大阪
    • Year and Date
      2011-09-27
    • Related Report
      2011 Final Research Report
  • [Presentation] 固体NMRによるPraidimicin Aのマンノース認識機構解析2011

    • Author(s)
      中川優, ほか
    • Organizer
      第53回天然有機化合物討論会
    • Place of Presentation
      大阪国際交流センター(大阪)
    • Year and Date
      2011-09-27
    • Related Report
      2011 Annual Research Report
  • [Presentation] Praidimicin AによるCa^<2+>依存的マンノース結合の固体NMR解析2011

    • Author(s)
      中川優,増田裕一,山田啓太,土井崇嗣,竹腰清乃理,五十嵐康弘,伊藤幸成
    • Organizer
      第30回日本糖質学会
    • Place of Presentation
      長岡
    • Year and Date
      2011-07-13
    • Related Report
      2011 Final Research Report
  • [Presentation] Praidimicin AによるCa^<2+>依存的マンノース結合の固体NMR解析2011

    • Author(s)
      中川優, ほか
    • Organizer
      第30回日本糖質学会
    • Place of Presentation
      ハイブ長岡(長岡)
    • Year and Date
      2011-07-13
    • Related Report
      2011 Annual Research Report
  • [Presentation] Pradimicin Aによるマンノース認識機構の固体NMR解析2011

    • Author(s)
      中川優,増田裕一,山田啓太,土井崇嗣,竹腰清乃理,五十嵐康弘,伊藤幸成
    • Organizer
      日本農芸化学会2011年度大会
    • Place of Presentation
      京都
    • Year and Date
      2011-03-27
    • Related Report
      2011 Final Research Report
  • [Remarks] RIKEN RESEARCH Highlights

    • URL

      http://www.rikenresearch.riken.jp/eng/research/6837

    • Related Report
      2011 Final Research Report
  • [Remarks] SpectroscopyNOW. com

    • Related Report
      2011 Final Research Report

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Published: 2010-08-23   Modified: 2016-04-21  

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