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Proteomics analyses of bone and soft tissue tumors

Research Project

Project/Area Number 22791405
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeSingle-year Grants
Research Field Orthopaedic surgery
Research InstitutionJuntendo University

Principal Investigator

SUEHARA Yoshiyuki  順天堂大学, 医学部, 助教 (70509405)

Project Period (FY) 2010 – 2012
Project Status Completed (Fiscal Year 2012)
Budget Amount *help
¥4,030,000 (Direct Cost: ¥3,100,000、Indirect Cost: ¥930,000)
Fiscal Year 2012: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2011: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2010: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Keywordsプロテオミクス / 骨軟部腫瘍 / GIST / Ewing肉腫 / 滑膜肉腫 / Pfetin / NPM1 / SCRN1
Research Abstract

We conducted proteomics approaches to discover novel biomarkers of bone and soft tissue tumors. Also, we tried to validate possibilities of the biomarker and the functions of the proteins in the each tumors for developing clinical applications. In this project, we focused on GIST, Ewing sarcoma, synovial sarcoma, osteosarcoma as well as giant cell tumor. In the results, we identified several proteins was candidates of biomarkers and have succeeded to confirm the power of biomarker in the each larger scale validation using multi-institutional cohorts. Also we also illuminated the functions of these proteins in the each tumors based on cell proliferation, interactive proteins, regulated proteins..

Report

(4 results)
  • 2012 Annual Research Report   Final Research Report ( PDF )
  • 2011 Annual Research Report
  • 2010 Annual Research Report
  • Research Products

    (54 results)

All 2013 2012 2011 2010

All Journal Article (35 results) (of which Peer Reviewed: 35 results) Presentation (18 results) (of which Invited: 1 results) Book (1 results)

  • [Journal Article] Proteomic approach toward personalized sarcoma treatment : lessons from prognostic biomarker discovery in gastrointestinal stromal tumor2013

    • Author(s)
      Kondo T, Kawai A
    • Journal Title

      Proteomics Clin Appl

      Volume: 7(1-2) Issue: 1-2 Pages: 70-78

    • DOI

      10.1002/prca.201200085

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Identification of KIF5B-RET and GOPC-ROS1 fusions in lung adenocarcinomas through a comprehensive mRNA-based screen for tyrosine kinase fusions2012

    • Author(s)
      Yoshiyuki Suehara, Maria Arcila, Marc Ladanyi, et al
    • Journal Title

      Clin Cancer Res 2012

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Discovery of biomarkers for osteosarcoma by proteomics approaches2012

    • Author(s)
      Yoshiyuki Suehara, Daisuke Kubota, Tadashi Kondo, et al
    • Journal Title

      Sarcoma

      Pages: 425636-425636

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Validation Study on Pfetin and ATP-dependent RNA Helicase DDX39 as Prognostic Biomarkers in Gastrointestinal Stromal Tumour2012

    • Author(s)
      Daisuke Kubota, Yoshiyuki Suehara, Tadashi Kondo, et al
    • Journal Title

      Jpn J Clin Oncol

      Volume: 42(8) Pages: 730-41

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Intraneural lipomatous tumor of the median nerve2012

    • Author(s)
      Taketo Okubo, Tsuyoshi Saito, Yoshiyuki Suehara, Kazuo Kaneko, et al
    • Journal Title

      Three case reports with a review of literature (International Journal of Surgery Case Reports

      Volume: 3(9) Pages: 407-411

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Pedicle freezing with liquid nitrogen for malignant bone tumour in the radius: a new technique of osteotomy of the ulna2012

    • Author(s)
      Tomoaki Torigoe, Yoshiyuki Suehara, Yasuo Yazawa, et al
    • Journal Title

      Journal of orthopaedic surgery

      Volume: 20(1) Pages: 98-102

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Clinical proteomics identified ATP-dependent RNA helicase DDX39 as a novel biomarker to predict poor prognosis of patients with gastrointestinal stromal tumor2012

    • Author(s)
      Kazutaka Kikuta, Yoshiyuki Suehara, , Akira Kawai, Tadashi Kondo, et al
    • Journal Title

      Journal of proteomics

      Volume: 75(4) Pages: 1089-98

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Identification of KIF5B-RET and GOPC-ROS1 fusions in lung adenocarcinomas through a comprehensive mRNA-based screen for tyrosine kinase fusions.2012

    • Author(s)
      Suehara Y et al
    • Journal Title

      Clinical Cancer Research

      Volume: 18 Issue: 24 Pages: 6599-6608

    • DOI

      10.1158/1078-0432.ccr-12-0838

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Discovery of biomarkers for osteosarcoma by proteomics approaches.2012

    • Author(s)
      Suehara Y
    • Journal Title

      Hindawi Publishing Corporation

      Volume: 2012 Pages: 425636-425636

    • DOI

      10.1155/2012/425636

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Malignant granular cell tumor with unusual long clinical course. An autopsy case with review of literatures.2012

    • Author(s)
      Saito T, Suehara Y et al.
    • Journal Title

      Journal of Cancer Science and Therapy

      Volume: 4 Issue: 09 Pages: 260-263

    • DOI

      10.4172/1948-5956.1000152

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Low-grade myofibroblastic sarcoma of the distal femur2012

    • Author(s)
      Saito T, Suehara Y et al.
    • Journal Title

      International Journal of Surgery Case Reports

      Volume: 4 Issue: 2 Pages: 195-199

    • DOI

      10.1016/j.ijscr.2012.11.017

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Validation study on Pfetin and ATP-dependent RNA helicase DDX39 as prognostic biomarkers in gastrointestinal stromal tumour2012

    • Author(s)
      Kubota D, Kawai A, Kondo T
    • Journal Title

      Jpn J Clin Oncol

      Volume: 42 Issue: 8 Pages: 730-741

    • DOI

      10.1093/jjco/hys092

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Intraneural lipomatous tumor of the median nerve: Three case reports with a review of literature2012

    • Author(s)
      Okubo T, Suehara Y et al.
    • Journal Title

      International Journal of Surgery Case Reports

      Volume: 3 Issue: 9 Pages: 407-411

    • DOI

      10.1016/j.ijscr.2012.05.007

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Pedicle freezing with liquid nitrogen for malignant bone tumour in the radius: a new technique of osteotomy of the ulna.2012

    • Author(s)
      Torigoe T, Suehara Y et al.
    • Journal Title

      Journal of orthopaedic surgery

      Volume: 20 Pages: 98-102

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Clinical proteomics identified ATP-dependent RNA helicase DDX39 as a novel biomarker to predict poor prognosis of patients with gastrointestinal stromal tumor2012

    • Author(s)
      Kazutaka, Kikuta, Yoshiyuki, Suehara, et al
    • Journal Title

      Journal of proteomics

      Volume: 75 Pages: 1089-1098

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Secernin-1 as a novel prognostic biomarker candidate of synovial sarcoma revealed by proteomics2011

    • Author(s)
      Yoshiyuki Suehara, Akira Kawai, Setsuo Hirohashi, Tadashi Kondo, et al
    • Journal Title

      Journal of proteomics

      Volume: 74(6) Pages: 829-42

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Proteomic analysis of soft tissue sarcoma (International Journal of Clinical Oncology2011

    • Author(s)
      Yoshiyuki Suehara
    • Journal Title

      International Journal of Clinical Oncology

      Volume: 16(2) Pages: 727-33

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] A case of secondary malignant giant-cell tumor of bone with p53 mutation after long-term follow-up2011

    • Author(s)
      Tsuyoshi Saito, Yoshiyuki Suehara, Takashi Yao, et al
    • Journal Title

      Hum Pathol

      Volume: 42(5) Pages: 727-33

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] A case of de novo secondary malignant giant-cell tumor of bone with loss of heterozygosity of p53 gene that transformed within a short-term follow-up2011

    • Author(s)
      Tsuyoshi Saito, Yoshiyuki Suehara, Takashi Yao, et al
    • Journal Title

      Pathology Research and Practice

      Volume: 207(10) Pages: 664-9

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Pfetin as a Prognostic Biomarker for Gastrointestinal Stromal Tumor: Validation Study in Multiple Clinical Facilities2011

    • Author(s)
      Daisuke Kubota, Yoshiyuki Suehara, Akira Kawai and Tadashi Kondo, et al
    • Journal Title

      Jpn J Clin Oncol

      Volume: 41(10) Pages: 1194-1202

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Metastatic Soft Tissue Tumors2011

    • Author(s)
      Tomoaki Torigoe, Yoshiyuki Suehara, Yasuo Yazawa, et al
    • Journal Title

      Journal of Cancer Therapy

      Volume: 2(5) Pages: 746-751

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] The surgical Treatment and Outcome of Pathological Fracture in Patients with Giant Cell Tumor of Bone2011

    • Author(s)
      Tomoaki Torigoe, Yoshiyuki Suehara, Yasuo Yazawa, et al
    • Journal Title

      Surgical Science

      Volume: 2(5) Pages: 2228-231

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Secernin-1 as a novel prognostic biomarker candidate of synovial sarcoma revealed by proteomics2011

    • Author(s)
      Yoshiyuki Suehara, et al
    • Journal Title

      Journal of Proteomics

      Volume: 74 Pages: 829-842

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Proteomic analysis of soft tissue sarcoma2011

    • Author(s)
      Yoshiyuki Suehara, et al
    • Journal Title

      International Journal of Clinical Oncology

      Volume: 16 Pages: 727-733

    • NAID

      10029366251

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Pfetin as a Prognostic Biomarker for Gastrointestinal Stromal Tumor : Validation Study in Multiple Clinical Facilities2011

    • Author(s)
      Daisuke Kubota, Yoshiyuki, Suehara, et al
    • Journal Title

      Jpn J Clin Oncol

      Volume: 41 Pages: 1194-1202

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A case of de novo secondary malignant giant-cell tumor of bone with loss of heterozygosity of p53 gene that transformed within a short-term follow-up2011

    • Author(s)
      Tsuyoshi, Saito, Yoshiyuki, Suehara, et al
    • Journal Title

      Pathology Research and Practice

      Volume: 207 Pages: 664-669

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A case of secondary malignant giant-cell tumor of bone with p53 mutation after long-term follow-up2011

    • Author(s)
      Tsuyoshi, Saito, Yoshiyuki, Suehara, et al
    • Journal Title

      Hum Pathol

      Volume: 42 Pages: 727-733

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Late recurrence of giant cell tumor of bone after adjuvant treatment2010

    • Author(s)
      Yoshiyuki Suehara, Tatsuya Takagi, Toshiharu Matsumoto, et al
    • Journal Title

      Journal of Orthopaedic Surgery

      Volume: 18(1) Pages: 122-5

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Pfetin as a Prognostic Biomarker in Gastrointestinal Stromal Tumor: Novel Monoclonal Antibody and External Validation Study in Multiple Clinical Facilities2010

    • Author(s)
      Kazutaka Kikuta, Yoshiyuki Suehara, Akira Kawai, Setsuo Hirohashi, Tadashi Kondo, et al
    • Journal Title

      Jpn J Clin Oncol

      Volume: 40(1) Pages: 60-72

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Peroxiredoxin 2 as a chemotherapy responsiveness biomarker candidate in osteosarcoma revealed by proteomics2010

    • Author(s)
      Kazutaka Kikuta, Yoshiyuki Suehara, Setsuo Hirohashi, Tadashi Kondo, et al
    • Journal Title

      Proteomics Clin Appl

      Volume: 4(5) Pages: 560-567

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Bone versus soft-tissue sarcomas in the elderly2010

    • Author(s)
      Tomoaki Torigoe, Atsuhiko Terakado, Yoshiyuki Suehara, Hisashi Kurosawa, Tatsuya Takagi, Yasuo Yazawa
    • Journal Title

      Journal of Orthopaedic Surgery

      Volume: 18(1) Pages: 58-62

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Late recurrence of giant cell tumor of bone after adjuvant treatment.2010

    • Author(s)
      Suehara Y, et al.
    • Journal Title

      Journal of Orthopaedic Surgery

      Volume: 18 Pages: 122-5

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Pfetin as a Prognostic Biomarker in Gastrointestinal Stromal Tumor : Novel Monoclonal Antibody and External Validation Study in Multiple Clinical Facilities.2010

    • Author(s)
      Kikuta K, Suehera Y, et.al
    • Journal Title

      Jpn J Clin Oncol

      Volume: 40 Pages: 60-72

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Peroxiredoxin 2 as a chemotherapy responsiveness biomarker candidate in osteosarcoma revealed by proteomics2010

    • Author(s)
      Kikuta K, Suehera Y, et.al
    • Journal Title

      Proteomics Clin Appl

      Volume: 4 Pages: 560-567

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Treatment outcome of bone and soft tissue sarcoma in elderly patients2010

    • Author(s)
      Torigoe T, Suehera Y, et.al
    • Journal Title

      Journal of Orthopaedic Surgery

      Volume: 18 Pages: 58-62

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Presentation] KIF5B-RET: Discovery of a novel fusion oncogene in lung adenocarcinomas by a systematic screen for tyrosine kinase fusions and identification of patients for a RET targeted therapy trial.2012

    • Author(s)
      Suehara Y et al.
    • Organizer
      American Society of Clinical Oncology
    • Place of Presentation
      Chicago, USA
    • Related Report
      2012 Annual Research Report
  • [Presentation] PROTEOMIC APPROACH REVEALED NOVEL PROGNOSTIC BIOMARKERS IN GASTROINTESTINAL STROMAL TUMOR (GIST)2012

    • Author(s)
      Kondo T, Suehara Y et al.
    • Organizer
      Connective Tissue Oncology Society
    • Place of Presentation
      Prague, Czech Republic
    • Related Report
      2012 Annual Research Report
  • [Presentation] INTEGRATION OF PROTEOMIC AND TRANSCRIPTOMIC ANALYSIS REVEALS THE DISTINCTIVE MOLECULAR BACKGROUNDS FOR GASTROINTESTINAL STROMAL TUMOR OF THE SMALL INTESTINE2012

    • Author(s)
      Ichikawa H, Suehara Y et al.
    • Organizer
      Connective Tissue Oncology Society
    • Place of Presentation
      Prague, Czech Republic
    • Related Report
      2012 Annual Research Report
  • [Presentation] CHEMO-RESPONSIVENESS PREDICTIVE BIOMARKER DISCOVERY FOR OSTEOSARCOMA USING MICRORNA-MICROARRAY2012

    • Author(s)
      Kubota D, Suehara Y et al.
    • Organizer
      Connective Tissue Oncology Society
    • Place of Presentation
      Prague, Czech Republic
    • Related Report
      2012 Annual Research Report
  • [Presentation] PROTEOMIC ANALYSIS IDENTIFIED LUNG METASTASIS-RELATED PROTEINS IN OSTEOSARCOMA2012

    • Author(s)
      Mukaihara K, Suehara Y et al.
    • Organizer
      Connective Tissue Oncology Society
    • Place of Presentation
      Prague, Czech Republic
    • Related Report
      2012 Annual Research Report
  • [Presentation] ROLE OF POST TRANSLATIONAL MODIFICATION OF THE RUNX2 TRANSCRIPTION FACTOR IN OSTEOSARCOMA2012

    • Author(s)
      Ito T, Suehara Y et al.
    • Organizer
      Connective Tissue Oncology Society
    • Place of Presentation
      Prague, Czech Republic
    • Related Report
      2012 Annual Research Report
  • [Presentation] PROTEIN EXPRESSION PROFILING OF PLEURAL EFFUSION IN MALIGNANT PLEURAL MESOTHELIOMA2012

    • Author(s)
      Sugihara Y, Suehara Y et al.
    • Organizer
      Connective Tissue Oncology Society
    • Place of Presentation
      Prague, Czech Republic
    • Related Report
      2012 Annual Research Report
  • [Presentation] Proteomic analysis identified lung metastasis-related proteins in osteosarcoma2012

    • Author(s)
      Daisuke Kubota, Suehara Y et al.
    • Organizer
      Human Proteome Organisation
    • Place of Presentation
      Boston, U.S.
    • Related Report
      2012 Annual Research Report
  • [Presentation] 基礎研究の現状と診断:骨軟部腫瘍におけるタンパク質発現解析2012

    • Author(s)
      末原義之
    • Organizer
      第45回日本整形外科学会・骨軟部腫瘍学術集会
    • Place of Presentation
      東京
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] NUCLEOPHOSMIN EXPRESSION DEFINES A MORE AGGRESSIVE SUBSET OF EWING'S SARCOMA2011

    • Author(s)
      Yoshiyuki Suehara, et al.
    • Organizer
      Connective Tissue Oncology Society annual meeting
    • Place of Presentation
      Chicago, IL, USA
    • Related Report
      2011 Annual Research Report
  • [Presentation] Role of post-translational modification of the RUNX2 transcription factor in osteosarcoma2011

    • Author(s)
      Tatsuo Ito, Yoshiyuki Suehara, et al.
    • Organizer
      American Association for Cancer Research, 102nd Annual meeting
    • Place of Presentation
      Orland, FL, USA
    • Related Report
      2011 Annual Research Report
  • [Presentation] PFETIN AS A PROGNOSTIC BIOMARKER FOR GASTROINTESTINAL STROMAL TUMOR : VALIDATION STUDY IN MULTIPLE CLINICAL FACILITIES2011

    • Author(s)
      Daisuke Kubota, Yoshiyuki Suehara, et al.
    • Organizer
      Connective Tissue Oncology Society annual meeting
    • Place of Presentation
      Chicago, IL, USA
    • Related Report
      2011 Annual Research Report
  • [Presentation] Clinical characteristics and prognostic implications of nucleophosmin (NPM1) expression in Ewing's sarcoma2011

    • Author(s)
      末原義之, 他
    • Organizer
      第70回日本癌学会総会
    • Place of Presentation
      名古屋
    • Related Report
      2011 Annual Research Report
  • [Presentation] Peroxiredoxin 2 as a chemotherapy responsiveness biomarker candidate in osteosarcoma revealed by proteomics2010

    • Author(s)
      Suehara Y, et al.
    • Organizer
      Connective Tissue Oncology Society annual meeting
    • Place of Presentation
      Paris, France
    • Year and Date
      2010-11-13
    • Related Report
      2010 Annual Research Report
  • [Presentation] 滑膜肉腫予後予測マーカーの開発を目的としたプロテオーム解析2010

    • Author(s)
      末原義之, 他
    • Organizer
      第25回日本整形外科学会基礎学術集会
    • Place of Presentation
      京都
    • Year and Date
      2010-10-15
    • Related Report
      2010 Annual Research Report
  • [Presentation] Peroxiredoxin 2 as a chemotherapy responsiveness biomarker candidate in osteosarcoma revealed by proteomics2010

    • Author(s)
      末原義之, 他
    • Organizer
      第69回日本癌学会総会
    • Place of Presentation
      大阪
    • Year and Date
      2010-09-22
    • Related Report
      2010 Annual Research Report
  • [Presentation] 骨・軟部腫瘍の診断と予後における分子病理学的アプローチ 滑膜肉腫予後予測マーカーの開発を目的としたプロテオーム解析2010

    • Author(s)
      末原義之, 他
    • Organizer
      第43回日本整形外科学会骨軟部腫瘍学術集会
    • Place of Presentation
      東京(シンポジウム)
    • Year and Date
      2010-07-15
    • Related Report
      2010 Annual Research Report
  • [Presentation] 滑膜肉腫組織亜型に関するプロテオーム解析2010

    • Author(s)
      末原義之, 他
    • Organizer
      第99回日本病理学会
    • Place of Presentation
      東京
    • Year and Date
      2010-04-27
    • Related Report
      2010 Annual Research Report
  • [Book] 骨・軟部腫瘍2010

    • Author(s)
      末原義之, 鳥越知明
    • Publisher
      アトラス骨・関節画像診断
    • Related Report
      2012 Final Research Report

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Published: 2010-08-23   Modified: 2019-07-29  

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