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Construction of stabilized PNA/DNA invasion complex for the analysis of higher-order structure of DNA

Research Project

Project/Area Number 22850004
Research Category

Grant-in-Aid for Research Activity Start-up

Allocation TypeSingle-year Grants
Research Field Chemistry related to living body
Research InstitutionThe University of Tokyo

Principal Investigator

AIBA Yuichiro  The University of Tokyo, 先端科学技術研究センター, 特任助教 (10581085)

Project Period (FY) 2010
Project Status Completed (Fiscal Year 2010)
Budget Amount *help
¥1,625,000 (Direct Cost: ¥1,250,000、Indirect Cost: ¥375,000)
Fiscal Year 2010: ¥1,625,000 (Direct Cost: ¥1,250,000、Indirect Cost: ¥375,000)
Keywords核酸 / バイオテクノロジー / 遺伝子 / ゲノム / PNA
Research Abstract

Peptide Nucleic Acid (PNA) is a one of DNA analogues and it can form stable duplex with its complementary DNA. Furthermore, PNA can "invade" a double-stranded DNA sequence-selectively (formation of invasion complex) and this special recognition mode of double-stranded DNA is called "strand invasion". In this study, we developed a strategy to stabilize the invasion complex for the analysis of higher-order structure of DNA.

Report

(2 results)
  • 2010 Annual Research Report   Final Research Report ( PDF )
  • Research Products

    (23 results)

All 2011 2010 Other

All Journal Article (4 results) (of which Peer Reviewed: 4 results) Presentation (17 results) Remarks (2 results)

  • [Journal Article] Manipulation of Single-Stranded DNA Using Artificial Site-Selective DNA Cutter Composed of Ce(IV)/EDTA and Phosphonate- Oligonucleotide Conjugates2011

    • Author(s)
      Y.Aiba, T.Lonnberg, M.Komiyama
    • Journal Title

      Chemistry-An Asian Journal (accepted.)

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Artificial DNA Cutters for DNA Manipulation and Genome Engineering2011

    • Author(s)
      Y.Aiba, J.Sumaoka, M.Komiyama
    • Journal Title

      Chemical Society Reviews 10

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Manipulation of Single-Stranded DNA using artificial site-selective DNA cutter composed of Ce(IV)/EDTA and phosphonate-oligonucleotide conjugates.2011

    • Author(s)
      Y.Aiba, T,Lonnberg, M.Komiyama
    • Journal Title

      Chemistry-An Asian Journal

      Volume: accepted

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Artificial DNA cutters for DNA manipulation and genome engineering.2011

    • Author(s)
      Y.Aiba, J.Sumaoka, M.Komiyama
    • Journal Title

      Chemical Society Reviews

      Volume: in press

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Presentation] Ce(IV)/EDTAとペプチド核酸・ペプチドコンジュゲートによる位置選択的DNA切断2011

    • Author(s)
      愛場雄一郎・濱野悠也・Accetta Alessandro・Sforza Stefano・Marchelli Rosangela・Corradini Roberto・小宮山眞
    • Organizer
      第28回希土類討論会
    • Place of Presentation
      タワーホール船堀(口頭発表)
    • Year and Date
      2011-05-12
    • Related Report
      2010 Final Research Report
  • [Presentation] PNA-Peptide conjugateを利用したDNA位置選択的切断2011

    • Author(s)
      愛場雄一郎・濱野悠也・Accetta Alessandro・Sforza Stefano・Marchelli Rosangela・Corradini Roberto・小宮山眞
    • Organizer
      日本化学会第91春季年会
    • Place of Presentation
      神奈川大学(口頭発表)
    • Year and Date
      2011-03-29
    • Related Report
      2010 Final Research Report
  • [Presentation] PNA-Peptide conjugateを利用したDNA位置選択的切断2011

    • Author(s)
      ○愛場雄一郎・濱野悠也・A.Accetta・S.Sforza・R.Marchelli・R.Corradini・小宮山眞
    • Organizer
      日本化学会第91春季年会
    • Place of Presentation
      神奈川大学
    • Year and Date
      2011-03-29
    • Related Report
      2010 Annual Research Report
  • [Presentation] PNA-peptide conjugateによる2重鎖DNA位置選択的切断への応用2011

    • Author(s)
      愛場雄一郎・濱野悠也・亀島渡・Accetta Alessandro・Sforza Stefano・Marchelli Rosangela・Corradini Roberto・小宮山眞
    • Organizer
      第60回高分子討論会
    • Place of Presentation
      岡山大学(発表予定)
    • Related Report
      2010 Final Research Report
  • [Presentation] 細胞内応用を志向した人工DNAカッター(ARCUT)の開発2011

    • Author(s)
      愛場雄一郎・濱野悠也・本田祐太・亀島渡・菊池宏海・鴫成美・須磨岡淳・小宮山眞
    • Organizer
      第21回バイオ・高分子シンポジウム
    • Place of Presentation
      関西大学(口頭発表予定)
    • Related Report
      2010 Final Research Report
  • [Presentation] Strict recognition of double- stranded DNA by chemically modified PNA (Peptide Nucleic Acid).2010

    • Author(s)
      Y.Aiba・M.Komiyama
    • Organizer
      2010 International Chemical Congress of Pacific Basin Societies
    • Place of Presentation
      Honolulu, Hawaii, USA(ポスター発表)
    • Year and Date
      2010-12-17
    • Related Report
      2010 Final Research Report
  • [Presentation] Strict recognition of double-stranded DNA by chemically modified PNA(Peptide Nucleic Acid)2010

    • Author(s)
      ○Y.Aiba, M.Komiyama
    • Organizer
      Pacifichem 2010
    • Place of Presentation
      Hawaii, USA
    • Year and Date
      2010-12-17
    • Related Report
      2010 Annual Research Report
  • [Presentation] Site-selective scission of double- stranded DNA by Ce(IV)/EDTA and only one mixed-base PNA.2010

    • Author(s)
      Y.Aiba・Y.Hamano・A.Accetta・S.Sforza・R.Marchelli・R.Corradini・M.Komiyama
    • Organizer
      2010 International Chemical Congress of Pacific Basin Societies
    • Place of Presentation
      Honolulu, Hawaii, USA(ポスター発表)
    • Year and Date
      2010-12-16
    • Related Report
      2010 Final Research Report
  • [Presentation] Site-selective scission of double-stranded DNA by Ce(IV)/EDTA and only one mixed-base PNA2010

    • Author(s)
      ○Y.Aiba, Y.Hamano, A.Accetta, S.Sforza, R.Marchelli, R.Corradini, M.Komiyama
    • Organizer
      Pacifichem 2010
    • Place of Presentation
      Hawaii, USA
    • Year and Date
      2010-12-16
    • Related Report
      2010 Annual Research Report
  • [Presentation] Incorporation of a flexible linker into pseudo-complementary PNA for the strict recognition of DNA.2010

    • Author(s)
      Y.Aiba・Y.Nishiyama・M.Komiyama
    • Organizer
      The 37th International Symposium on Nucleic Acids Chemistry
    • Place of Presentation
      Yokohama, Japan(ポスター発表)
    • Year and Date
      2010-11-10
    • Related Report
      2010 Final Research Report
  • [Presentation] Incorporation of a flexible linker into pseudo-complementaly PNA for the strict recognition of DNA2010

    • Author(s)
      ○Y.Aiba, Y.Nishiyama, M.Komiyama
    • Organizer
      International Symposium on Nucleic Acids Chemistry 2010
    • Place of Presentation
      Yokohama JAPAN
    • Year and Date
      2010-11-10
    • Related Report
      2010 Annual Research Report
  • [Presentation] 単一のPNA-peptide コンジュゲートを利用した位置選択的DNA切断2010

    • Author(s)
      愛場雄一郎・濱野悠也・Accetta Alessandro・Sforza Stefano・Marchelli Rosangela・Corradini Roberto・小宮山眞
    • Organizer
      第4回バイオ関連化学シンポジウム
    • Place of Presentation
      大阪大学(ポスター発表)
    • Year and Date
      2010-09-26
    • Related Report
      2010 Final Research Report
  • [Presentation] 単一のPNA-peptideコンジュゲートを利用した位置選択的DNA切断2010

    • Author(s)
      ○愛場雄一郎・濱野悠也・A.Accetta・S.Sforza・R.Marchelli・R.Corradini・小宮山眞
    • Organizer
      第25回生体機能関連化学シンポジウム
    • Place of Presentation
      大阪大学
    • Year and Date
      2010-09-26
    • Related Report
      2010 Annual Research Report
  • [Presentation] 単一のPNA-peptideコンジュゲートを利用した位置選択的DNA 切断2010

    • Author(s)
      愛場雄一郎・濱野悠也・Accetta Alessandro・Sforza Stefano・Marchelli Rosangela・Corradini Roberto・小宮山眞
    • Organizer
      第25回生体機能関連化学シンポジウム「若手フォーラム」
    • Place of Presentation
      大阪大学(ポスター発表)
    • Year and Date
      2010-09-23
    • Related Report
      2010 Final Research Report
  • [Presentation] 単一のPNA-peptideコンジュゲートを利用した位置選択的DNA切断2010

    • Author(s)
      ○愛場雄一郎・濱野悠也・A.Accetta・S.Sforza・R.Marchelli・R.Corradini・小宮山眞
    • Organizer
      第25回生体機能関連化学シンポジウム若手フォーラム
    • Place of Presentation
      大阪大学
    • Year and Date
      2010-09-23
    • Related Report
      2010 Annual Research Report
  • [Presentation] 機能性リンカー導入による新規PNA修飾法の開発2010

    • Author(s)
      愛場雄一郎・小宮山眞
    • Organizer
      第22回生体機能関連化学部会若手の会サマースクール
    • Place of Presentation
      三重県(ポスター発表)
    • Year and Date
      2010-07-16
    • Related Report
      2010 Final Research Report
  • [Presentation] 機能性リンカー導入による新規PNA修飾法の開発2010

    • Author(s)
      愛場雄一郎・小宮山眞
    • Organizer
      日本化学会生体機能関連化学部会若手の会サマースクール2010
    • Place of Presentation
      三重県
    • Year and Date
      2010-07-16
    • Related Report
      2010 Annual Research Report
  • [Remarks] ホームページ等

    • URL

      http://www.mkomi.rcast.u-tokyo.ac.jp/member/aiba.html

    • Related Report
      2010 Final Research Report
  • [Remarks]

    • URL

      http://www.mkomi.rcast.u-tokyo.ac.jp/member/aiba.html

    • Related Report
      2010 Annual Research Report

URL: 

Published: 2010-08-27   Modified: 2016-04-21  

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