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Analysis on the higher-order chromatin structure in the interphase nucleus using super-resolution fluorescence microscopy

Research Project

Project/Area Number 22870042
Research Category

Grant-in-Aid for Research Activity Start-up

Allocation TypeSingle-year Grants
Research Field Structural biochemistry
Research InstitutionNational Institute of Information and Communications Technology

Principal Investigator

MATSUDA Atsushi  独立行政法人情報通信研究機構, 未来ICT研究所・バイオICT研究室, 専攻研究員 (20585723)

Project Period (FY) 2010 – 2011
Project Status Completed (Fiscal Year 2011)
Budget Amount *help
¥3,146,000 (Direct Cost: ¥2,420,000、Indirect Cost: ¥726,000)
Fiscal Year 2011: ¥1,508,000 (Direct Cost: ¥1,160,000、Indirect Cost: ¥348,000)
Fiscal Year 2010: ¥1,638,000 (Direct Cost: ¥1,260,000、Indirect Cost: ¥378,000)
Keywordsクロマチン / 分裂酵母 / 超分解能蛍光顕微鏡 / 遺伝子 / 発現制御 / 生物物理 / 画像 / 生体生命情報学
Research Abstract

I developed a method for live observation using super-resolution microscopy, 3DSIM, and applied on live fission yeast. The interphase chromatin in live fission yeast formed fibrous structures with a diameter of 100-150 nm. Chromatin in fixed fission yeast nuclei was stained with antibodies against modified histones and observed with 3DSIM, then the level of overlap with the DNA mass was quantitatively analyzed. The results showed that regions associated with ongoing transcription were de-condensed and extended from fibrous structures.

Report

(3 results)
  • 2011 Annual Research Report   Final Research Report ( PDF )
  • 2010 Annual Research Report
  • Research Products

    (31 results)

All 2012 2011 2010 Other

All Journal Article (5 results) (of which Peer Reviewed: 5 results) Presentation (21 results) Remarks (5 results)

  • [Journal Article] Highly precise and developmentally programmed genome assembly in Paramecium requires ligase IV-dependent end joining2011

    • Author(s)
      Kapusta A, Matsuda A, Marmignon A, Ku M, Silve A, Meyer E, Forney JD, Malinsky S, Betermier M
    • Journal Title

      PLoS Genet

      Volume: 7(4) Issue: 4 Pages: 1002049-1002049

    • DOI

      10.1371/journal.pgen.1002049

    • Related Report
      2011 Annual Research Report 2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Inner nuclear membrane protein Ima1 is dispensable for intranuclear positioning of centromeres2011

    • Author(s)
      Hiraoka Y, Maekawa H, Asakawa H, Chikashige Y, Kojidani T, Osakada H, Matsuda A, Haraguchi T
    • Journal Title

      Genes Cells

      Volume: 16 Issue: 10 Pages: 1000-1011

    • DOI

      10.1111/j.1365-2443.2011.01544.x

    • Related Report
      2011 Annual Research Report 2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] The Conjugation-Specific Die5 Protein Is Required for Development of the Somatic Nucleus in both Paramecium and Tetrahymena2010

    • Author(s)
      Matsuda, A., Shieh, A., Chalker, D., and Forney, J. D.
    • Journal Title

      Eukaryotic Cell

      Volume: 9(7) Issue: 7 Pages: 1087-1099

    • DOI

      10.1128/ec.00379-09

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Fast live simultaneous multiwavelength four-dimensional optical microscopy2010

    • Author(s)
      Carlton PM, Boulanger J, Kervrann C, Sibarita JB, Salamero J, Gordon-Messer S, Bressan D, Haber JE, Haase S, Shao L, Winoto L, Matsuda A, Kner P, Uzawa S, Gustafsson M, Kam Z, Agard DA, Sedat JW
    • Journal Title

      Proc Natl Acad Sci USA

      Volume: 107(37) Issue: 37 Pages: 16016-16022

    • DOI

      10.1073/pnas.1004037107

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Condensed mitotic chromosome structure at nanometer resolution using PALM and EGFP-Histones2010

    • Author(s)
      Matsuda, A., Shao, L., Boulanger, J., Kervrann, C., Carlton, P. M., Kner, P., Agard, D., and Sedat, J. W.
    • Journal Title

      PLoS one

      Volume: 5 Issue: 9 Pages: 12768-12768

    • DOI

      10.1371/journal.pone.0012768

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Presentation] Localization microscopy with conventional GFP and noisy biological samples2012

    • Author(s)
      Atsushi Matsuda
    • Organizer
      Superresolution Microscopy Workshop
    • Place of Presentation
      Biopolis, Singapore
    • Year and Date
      2012-03-28
    • Related Report
      2011 Annual Research Report 2011 Final Research Report
  • [Presentation] Five-dimensional super-resolution imaging with OMX2012

    • Author(s)
      Atsushi Matsuda
    • Organizer
      Superresolution Microscopy Workshop
    • Place of Presentation
      Biopolis, Singapore
    • Year and Date
      2012-03-28
    • Related Report
      2011 Annual Research Report 2011 Final Research Report
  • [Presentation] 超分解能蛍光顕微鏡により観察する分裂酵母のクロマチン2012

    • Author(s)
      松田厚志、平岡泰、原口徳子
    • Organizer
      第29回染色体ワークショップ
    • Place of Presentation
      ホテルニュー水戸屋、宮城県
    • Year and Date
      2012-01-25
    • Related Report
      2011 Final Research Report
  • [Presentation] 超分解能蛍光顕微鏡により観察する分裂酵母のクロマチン2012

    • Author(s)
      松田厚志
    • Organizer
      第29回染色体ワークショップ
    • Place of Presentation
      仙台秋保温泉、宮城県
    • Year and Date
      2012-01-25
    • Related Report
      2011 Annual Research Report
  • [Presentation] 超分解能蛍光顕微鏡3DSIMにより見る間期核クロマチン2012

    • Author(s)
      松田厚志
    • Organizer
      神戸大学重点研究チーム学術講演会
    • Place of Presentation
      神戸大学、兵庫県
    • Year and Date
      2012-01-10
    • Related Report
      2011 Annual Research Report 2011 Final Research Report
  • [Presentation] Spatial organization of fission yeast chromatin observed with super-resolution fluorescent microscopy2011

    • Author(s)
      松田厚志,平岡泰,原口徳子
    • Organizer
      第34回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜、神奈川県
    • Year and Date
      2011-12-16
    • Related Report
      2011 Annual Research Report 2011 Final Research Report
  • [Presentation] 高分解能顕微鏡2011

    • Author(s)
      松田厚志
    • Organizer
      第17回細胞生物学ワークショップ
    • Place of Presentation
      情報通信研究機構、兵庫県
    • Year and Date
      2011-08-12
    • Related Report
      2011 Annual Research Report 2011 Final Research Report
  • [Presentation] 回析限界を超えた蛍光顕微鏡により見る細胞核内クロマチン2011

    • Author(s)
      松田厚志
    • Organizer
      第37回レーザ顕微研究会
    • Place of Presentation
      理化学研究所、埼玉県
    • Year and Date
      2011-07-06
    • Related Report
      2011 Final Research Report
  • [Presentation] 回析限界を超えた蛍光顕微鏡により見る細胞核内クロマチン2011

    • Author(s)
      松田厚志
    • Organizer
      第37回レーザ顕微鏡研究会
    • Place of Presentation
      理化学研究所、埼玉県
    • Year and Date
      2011-07-06
    • Related Report
      2011 Annual Research Report
  • [Presentation] Interphase chromatin structure observed with superresolution microscopy2011

    • Author(s)
      Atsushi Matsuda, John W. Sedat, David A. Agard, Yasushi Hiraoka and Tokuko Haraguchi
    • Organizer
      International Symposium on the Physicochemical Field for Genetic Activities
    • Place of Presentation
      The Westin Awaji Island, Japan
    • Year and Date
      2011-01-24
    • Related Report
      2011 Final Research Report
  • [Presentation] Inner nuclear membrane proteins in the fission yeast2011

    • Author(s)
      Hiromi Maekawa, Haruhiko Asakawa, Yuji Chikashige, Atsushi Matsuda, Tokuko Haraguchi, Yasushi Hiraoka
    • Organizer
      International Symposium on the Physicochemical Field for Genetic Activities
    • Place of Presentation
      The Westin Awaji Island, Japan
    • Year and Date
      2011-01-24
    • Related Report
      2011 Final Research Report
  • [Presentation] Interphase chromatin structure observed with superresolution microscopy.2011

    • Author(s)
      Atsushi Matsuda
    • Organizer
      International Symposium on the Physicochemical Field for Genetic Activities.
    • Place of Presentation
      淡路夢舞台国際会議場、兵庫県
    • Year and Date
      2011-01-24
    • Related Report
      2010 Annual Research Report
  • [Presentation] Inner nuclear membrane proteins in the fission yeast2011

    • Author(s)
      Hiromi Maekawa
    • Organizer
      International Symposium on the Physicochemical Field for Genetic Activities.
    • Place of Presentation
      淡路夢舞台国際会議場、兵庫県
    • Year and Date
      2011-01-24
    • Related Report
      2010 Annual Research Report
  • [Presentation] 超分解能3DSIMにより観察される間期細胞核内クロマチン繊維2011

    • Author(s)
      松田厚志、平岡泰、原口徳子
    • Organizer
      第28回染色体ワークショップ
    • Place of Presentation
      山代温泉瑠璃光(コンベンションホール)、石川県
    • Year and Date
      2011-01-12
    • Related Report
      2011 Final Research Report
  • [Presentation] 超分解能3DSIMにより観察される間期細胞核内クロマチン繊維2011

    • Author(s)
      松田厚志
    • Organizer
      染色体ワークショップ
    • Place of Presentation
      加賀温泉、石川県
    • Year and Date
      2011-01-12
    • Related Report
      2010 Annual Research Report
  • [Presentation] GFPとデノイジングを用いたPALM2010

    • Author(s)
      松田厚志
    • Organizer
      第2回光塾
    • Place of Presentation
      大阪大学、大阪府
    • Year and Date
      2010-12-11
    • Related Report
      2011 Final Research Report 2010 Annual Research Report
  • [Presentation] 超分解能顕微鏡で見る細胞核構造2010

    • Author(s)
      松田厚志
    • Organizer
      視る生物学5-植物を視る光の新技術-
    • Place of Presentation
      NAISTミレニアムホール、奈良県
    • Year and Date
      2010-11-25
    • Related Report
      2011 Final Research Report
  • [Presentation] 超分解能顕微鏡で見る細胞核構造2010

    • Author(s)
      松田厚志
    • Organizer
      視る生物学5-植物を視る光の新技術
    • Place of Presentation
      NAISTミレニアムホール、奈良県
    • Year and Date
      2010-11-25
    • Related Report
      2010 Annual Research Report
  • [Presentation] 時空間分解能向上によるクロマチンイメージングの新展開2010

    • Author(s)
      松田厚志
    • Organizer
      第48回日本生物物理学会年会
    • Place of Presentation
      東北大学、宮城県
    • Year and Date
      2010-09-21
    • Related Report
      2011 Final Research Report 2010 Annual Research Report
  • [Presentation] 高分解能顕微鏡2010

    • Author(s)
      松田厚志
    • Organizer
      第15回細胞生物学ワークショップ
    • Place of Presentation
      未来ICT研究センター、兵庫県
    • Year and Date
      2010-08-18
    • Related Report
      2011 Final Research Report
  • [Presentation] 超高分解能蛍光顕微鏡技術によりクロマチン高次構造を直接的に観察する2010

    • Author(s)
      松田厚志, LinShao, DavidA. Agard、John W Sedat
    • Organizer
      第9回核ダイナミクス研究
    • Place of Presentation
      ラフォーレ修善寺、静岡県
    • Year and Date
      2010-05-27
    • Related Report
      2011 Final Research Report
  • [Remarks]

    • URL

      http://www2.nict.go.jp/advanced_ict/bio/w131103/CellMagic/

    • Related Report
      2011 Final Research Report
  • [Remarks]

    • URL

      http://www.fbs.osaka-u.ac.jp/labs/hiraoka/index.html

    • Related Report
      2011 Final Research Report
  • [Remarks]

    • URL

      http://www2.nict.go.jp/advanced_ict/bio/w131103/CellMagic/

    • Related Report
      2011 Annual Research Report
  • [Remarks]

    • URL

      http://www.fbs.osaka-u.ac.jp/labs/hiraoka/index.html

    • Related Report
      2011 Annual Research Report
  • [Remarks]

    • URL

      http://www-karc.nict.go.jp/w131103/CellMagic/index.html

    • Related Report
      2010 Annual Research Report

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Published: 2010-08-27   Modified: 2016-04-21  

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