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Functions and metabolism of D-serine in eukaryote

Research Project

Project/Area Number 22880014
Research Category

Grant-in-Aid for Research Activity Start-up

Allocation TypeSingle-year Grants
Research Field Applied biochemistry
Research InstitutionNagoya University

Principal Investigator

ITO Tomokazu  名古屋大学, 生命農学研究科, 助教 (90584970)

Project Period (FY) 2010 – 2011
Project Status Completed (Fiscal Year 2011)
Budget Amount *help
¥3,146,000 (Direct Cost: ¥2,420,000、Indirect Cost: ¥726,000)
Fiscal Year 2011: ¥1,508,000 (Direct Cost: ¥1,160,000、Indirect Cost: ¥348,000)
Fiscal Year 2010: ¥1,638,000 (Direct Cost: ¥1,260,000、Indirect Cost: ¥378,000)
KeywordsD-セリン / D-アミノ酸 / ピリドキサール5'リン酸 / D-セリンデヒドラターゼ / ピリドキサール
Research Abstract

We examined the properties of the serine racemase from Dictyostelium discoideum. The enzyme was found to be unique in its stimulation by N_a^+in addition to Mg^<2+> and Ca^<2+>, which are well-known activators for the mammalian serine racemase. Mutation of the divalent metal ion binding sites abolished both Mg^<2+-> and Na+-dependent stimulation, indicating that Mg^<2+> and Na^+share the common metal ion-binding site. In addition, we studied the catalytic mechanism of D-serine dehydratase from Saccharomyces cerevisiae. We found that the Zn^<2+> is indispensable for the abstraction of.-hydrogen as well as elimination of hydroxyl group from D-serine. We revealed that both.-hydrogen abstraction and hydroxyl group elimination from D-serine occurs in a concerted fashion.

Report

(3 results)
  • 2011 Annual Research Report   Final Research Report ( PDF )
  • 2010 Annual Research Report
  • Research Products

    (23 results)

All 2013 2012 2011 2010 Other

All Journal Article (8 results) (of which Peer Reviewed: 5 results) Presentation (14 results) Remarks (1 results)

  • [Journal Article] Role of Zinc Ion for CatalyticActivity in D-Serine Dehydratase fromSaccharomyces cerevisiae2013

    • Author(s)
      Ito T, Koga K, Hemmi H, YoshimuraT.
    • Journal Title

      FEBS Journal

      Volume: 279 Issue: 4 Pages: 612-624

    • DOI

      10.1111/j.1742-4658.2011.08451.x

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Role of zinc ion for catalytic activity in D-serine dehydratase from Saccharomyces cerevisiae2012

    • Author(s)
      Ito T, Koga K, Hemmi H, Yoshimura T
    • Journal Title

      FEBS J.

      Volume: 279 Pages: 61-24

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Metal ion dependency of serine racemase from Dictyostelium discoideum2012

    • Author(s)
      Ito T, Murase H, Maekawa M, Goto M, Hayashi S, Saito H, Maki M, Hemmi H, Yoshimura T
    • Journal Title

      Amino acids

      Volume: (in press)

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] A highly sensitive enzymatic assay for D-and total serine detection using D-serine dehydratase from Saccharomyces cerevisiae2011

    • Author(s)
      Naka T, Ito T, Hemmi H, Yoshimura T
    • Journal Title

      J. Mol. Catal. B Enzymatic

      Volume: 67 Pages: 150-154

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] ほ乳類のアスパラギン酸ラセマーゼ2011

    • Author(s)
      伊藤智和、吉村徹
    • Journal Title

      Vitamins

      Volume: 85 Pages: 661-662

    • Related Report
      2011 Final Research Report
  • [Journal Article] ほ乳動物のアスパラギン酸ラセマーゼ2011

    • Author(s)
      伊藤智和、吉村徹
    • Journal Title

      ビタミン

      Volume: 85 Pages: 661-662

    • NAID

      110008898023

    • Related Report
      2011 Annual Research Report
  • [Journal Article] 右手型アミノ酸の役割2010

    • Author(s)
      伊藤智和
    • Journal Title

      生物工学会誌

      Volume: 88 Pages: 613-613

    • Related Report
      2011 Final Research Report 2010 Annual Research Report
  • [Journal Article] A highly sensitive enzymatic assay for D- and total serine detection using D-serine dehydratase from Saccharomyces cerevisiae2010

    • Author(s)
      Tomoko Naka, Tomokazu Ito, Hisashi Hemmi, Tohru Yoshimura
    • Journal Title

      Journal of Molecular Catalysis B

      Volume: 67 Pages: 150-154

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Presentation] 細胞性粘菌におけるD-セリン代謝関連酵素とその生理機能2012

    • Author(s)
      萩泰典、伊藤智和、齊藤玉緒、邊見久、吉村徹
    • Organizer
      日本農芸化学会2012年度大会
    • Related Report
      2011 Final Research Report
  • [Presentation] 真核生物型Dセリンデヒドラーゼにおける亜鉛の意義2011

    • Author(s)
      伊藤智和、邊見久、吉村徹
    • Organizer
      日本農芸化学会大会2011年度大会
    • Place of Presentation
      要旨集
    • Year and Date
      2011-03-05
    • Related Report
      2010 Annual Research Report
  • [Presentation] 真核生物D-セリンデヒドラーゼ:神経疾患解析への応用2011

    • Author(s)
      高田紘江、磯部恵子、伊藤智和、邊見久、吉村徹
    • Organizer
      日本農芸化学会大会2011年度大会
    • Place of Presentation
      要旨集
    • Year and Date
      2011-03-05
    • Related Report
      2010 Annual Research Report
  • [Presentation] 細胞性粘菌におけるD-セリンの生理的役割の解明2011

    • Author(s)
      萩泰典、伊藤智和、齊藤玉緒、邊見久、吉村徹
    • Organizer
      第84回日本生化学会大会
    • Related Report
      2011 Final Research Report
  • [Presentation] 新奇ビタミンB6タンパク質YggSの機能解析:E. coliにおけるL-バリン生合成制御2011

    • Author(s)
      飯盛淳平、伊藤智和、邊見久、吉村徹
    • Organizer
      第84回日本生化学会大会
    • Related Report
      2011 Final Research Report
  • [Presentation] PEG化D-セリンデヒドラーゼの調製と物性の解析2011

    • Author(s)
      高田紘江、磯部恵子、伊藤智和、邊見久、吉村徹
    • Organizer
      第7回D-アミノ酸研究会学術講演会
    • Related Report
      2011 Final Research Report
  • [Presentation] Characterization of YggS from Escherichia coli : A unique PLP-dependent protein involved in the refulation of L-valine production2011

    • Author(s)
      飯盛淳平、伊藤智和、邊見久、吉村徹
    • Organizer
      IUMS201
    • Related Report
      2011 Final Research Report
  • [Presentation] 真核細胞型D-セリンデヒドラターゼの神経疾患解析への応用2011

    • Author(s)
      伊藤智和、高田紘江、磯部恵子、邊見久、吉村徹
    • Organizer
      日本ビタミン学会第63回大会
    • Related Report
      2011 Final Research Report
  • [Presentation] ビタミンB6を要求する細菌の転写制御因子、GabR2011

    • Author(s)
      吉村徹、白木俊介、奥田啓太、深田はるみ、後藤勝、伊藤智和、邊見久
    • Organizer
      日本ビタミン学会第63回大会
    • Related Report
      2011 Final Research Report
  • [Presentation] 真核生物D-セリンデヒドラーゼ:神経疾患解析への応用2011

    • Author(s)
      高田紘江、磯部恵子、伊藤智和、邊見久、吉村徹
    • Organizer
      日本農芸化学会2011年度大会
    • Related Report
      2011 Final Research Report
  • [Presentation] 真核生物型Dセリンデヒドラーゼにおける亜鉛の意義2011

    • Author(s)
      伊藤智和、邊見久、吉村徹
    • Organizer
      日本農芸化学会2011年度大会
    • Related Report
      2011 Final Research Report
  • [Presentation] Catalytic mechanisms of serine racemase from Dictyostelium discoideum2010

    • Author(s)
      前川元貴、伊藤智和、後藤勝、邊見久、吉村徹
    • Organizer
      日本生化学会大会2010年度大会
    • Related Report
      2011 Final Research Report 2010 Annual Research Report
  • [Presentation] 真核生物型D-セリンデヒドラーゼにおける亜鉛の意義2010

    • Author(s)
      伊藤智和、邊見久、吉村徹
    • Organizer
      酵素補酵素研究会
    • Related Report
      2011 Final Research Report 2010 Annual Research Report
  • [Presentation] 細胞性粘菌、Dictyostelium discoideumの真核細胞型セリンラセマーゼに対する金属の影響2010

    • Author(s)
      吉村徹、前川元貴、邊見久、伊藤智和
    • Organizer
      日本ビタミン学会第62回大会
    • Related Report
      2011 Final Research Report 2010 Annual Research Report
  • [Remarks]

    • URL

      http://www.agr.nagoya-u.ac.jp/~bmm/

    • Related Report
      2011 Final Research Report

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Published: 2010-08-27   Modified: 2016-04-21  

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