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Integrated deep learning model for personalized transcranial magnetic stimulation

Research Project

Project/Area Number 22K12765
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Review Section Basic Section 90110:Biomedical engineering-related
Research InstitutionUniversity of Hyogo

Principal Investigator

Rashed Essam  兵庫県立大学, 情報科学研究科, 教授 (60837590)

Co-Investigator(Kenkyū-buntansha) 平田 晃正  名古屋工業大学, 工学(系)研究科(研究院), 教授 (00335374)
ゴメスタメス ホセデビツト  千葉大学, フロンティア医工学センター, 准教授 (60772902)
Project Period (FY) 2022-04-01 – 2025-03-31
Project Status Granted (Fiscal Year 2023)
Budget Amount *help
¥3,250,000 (Direct Cost: ¥2,500,000、Indirect Cost: ¥750,000)
Fiscal Year 2024: ¥650,000 (Direct Cost: ¥500,000、Indirect Cost: ¥150,000)
Fiscal Year 2023: ¥780,000 (Direct Cost: ¥600,000、Indirect Cost: ¥180,000)
Fiscal Year 2022: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
KeywordsDeep learning / brain stimulation / TMS / Segmentation / Brain stimulation
Outline of Research at the Start

Transcranial magnetic stimulation (TMS) is commonly used in several clinical procedures. Due to large variability of efficacy, planning of personalized stimulation is highly desired. However, personalized TMS requires a complicated data processing pipeline for individual head model generation to provide target-specific stimulation. This project aims at the development of accurate and reliable deep learning model to handle data processing, subject variabilities and other physical effects with integrated deep learning framework.

Outline of Annual Research Achievements

In this year, we have have conducted a comprehensive training process for the developed deep learning models. The training consider optimizing the process of TMS focalization of specific brain region (motor cortex) and how to estimate stimulation parameters in different scenarios. The SHARM dataset (https://arxiv.org/abs/2309.06677) developed last year is used in the training process with TMS data obtain from our research collaborators.
After the initial training, the model parameters are optimized using several validation studies to achieve superior network performance. We have evaluated different versions of the network architecture to validate potential variations such as adding attention layers and include BN/dropout layers. Now, we are in the phase of preparing publications.

Current Status of Research Progress
Current Status of Research Progress

1: Research has progressed more than it was originally planned.

Reason

The research is progress smoothly than planned. We initially plan to complete three work packages in the first year (development of the deep learning model, data collection, and TMS simulation). Which are all successfully completed. Furthermore, we have reported results through several presentations and invited talks. Work package 4 that include network training (scheduled for FY2023) was partially completed in FY2022. Moreover, we have completed Work Package 5 (validation and optimization) which was planned to be completed within the third year.

Strategy for Future Research Activity

The research plan for FY2024 include two work packages (Result reporting) and (deployment of open-source software). We have made some conference publications and already submitted one journal paper to international journal and currently under review. Further publications is expected based on results we already have in hands.
Additional experiment will be conducted for extension of the achieved results in terms of TMS focal point optimization. Also, we will prepare documentation for the open-source software to ease sharing with research community.

Report

(2 results)
  • 2023 Research-status Report
  • 2022 Research-status Report
  • Research Products

    (8 results)

All 2024 2023 2022

All Journal Article (1 results) (of which Int'l Joint Research: 1 results,  Open Access: 1 results) Presentation (7 results) (of which Int'l Joint Research: 3 results,  Invited: 4 results)

  • [Journal Article] SHARM: Segmented Head Anatomical Reference Models2023

    • Author(s)
      Essam A. Rashed, Mohammad al-Shatouri, Ilkka Laakso, Akimasa Hirata
    • Journal Title

      arXiv (preprint)

      Volume: Corresponding Author Pages: 1-20

    • Related Report
      2023 Research-status Report
    • Open Access / Int'l Joint Research
  • [Presentation] Improvement of brain stimulation pipeline using machine learning2024

    • Author(s)
      E. A. Rashed and A. Hirata
    • Organizer
      Neuromodec Webinar Series
    • Related Report
      2023 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] Electromagnetic brain stimulation: verification of deep learning technology2024

    • Author(s)
      Essam A. Rashed
    • Organizer
      The 63nd Annual Conference of Japanese Society for Medical and Biological Engineering," Kagoshima, Japan 22-25 May 2024
    • Related Report
      2023 Research-status Report
  • [Presentation] Deep learning models for brain stimulation2023

    • Author(s)
      Essam A. Rashed
    • Organizer
      Research Seminar at Australian Catholic University (ACU), Australia
    • Related Report
      2023 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] Deep learning-based segmented human head dataset2023

    • Author(s)
      Essam A. Rashed
    • Organizer
      The 62nd Annual Conference of Japanese Society for Medical and Biological Engineering," Nagoya, Japan 18-20 May 2023
    • Related Report
      2023 Research-status Report
  • [Presentation] Development of human head models from anatomical medical images using deep learning2022

    • Author(s)
      Essam Rashed
    • Organizer
      The 2nd International Conference on Medical Imaging Science and Technology (MIST 2022)
    • Related Report
      2022 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] Deep learning models for efficient electromagnetic neuromodulation2022

    • Author(s)
      Essam Rashed
    • Organizer
      兵庫県立大学 知の交流シンポジウム
    • Related Report
      2022 Research-status Report
  • [Presentation] Deep learning in medical imaging2022

    • Author(s)
      Essam Rashed
    • Organizer
      Egypt - Japan Multidisciplinary Science forum, Health and artificial intelligence, post COVID era
    • Related Report
      2022 Research-status Report
    • Invited

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Published: 2022-04-19   Modified: 2024-12-25  

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