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Spatiotemporal metabolomics analysis in the human cornea-on-a-chip for the determination of ocular drug toxicity

Research Project

Project/Area Number 22K14548
Research Category

Grant-in-Aid for Early-Career Scientists

Allocation TypeMulti-year Fund
Review Section Basic Section 27040:Biofunction and bioprocess engineering-related
Research InstitutionRitsumeikan University

Principal Investigator

ABDALKADER Rodi  立命館大学, 立命館グローバル・イノベーション研究機構, 准教授 (20839964)

Project Period (FY) 2022-04-01 – 2025-03-31
Project Status Granted (Fiscal Year 2023)
Budget Amount *help
¥4,550,000 (Direct Cost: ¥3,500,000、Indirect Cost: ¥1,050,000)
Fiscal Year 2023: ¥2,340,000 (Direct Cost: ¥1,800,000、Indirect Cost: ¥540,000)
Fiscal Year 2022: ¥2,210,000 (Direct Cost: ¥1,700,000、Indirect Cost: ¥510,000)
KeywordsCornea-on-a-chip / Microfluidic / Metabolomic / Drug toxicity / cornea-on-a-chip / iPSC / metabolomics
Outline of Research at the Start

This proposal aims for the development of a dynamic human cornea model in integration with untargeted metabolomics by combining human induced pluripotent stem cells (iPSC), microfluidics technologies, and metabolomics. This approach will allow us to investigate the early toxicity of the ophthalmic drugs through the selection of significant metabolites markers upon drugs exposure.

Outline of Annual Research Achievements

This research aims to identify metabolite markers related to drug toxicity using untargeted metabolomic analysis in a human corneal epithelium-on-a-chip. In the current fiscal year, we successfully investigated the adverse effects of a model drug, diclofenac, a non-steroidal anti-inflammatory drug, in the corneal epithelium-on-a-chip. Through the utilization of untargeted metabolomics and RNA sequencing, we were able to discover metabolite markers and relevant genes associated with diclofenac treatment, such as methyl-2-oxovaleric acid, 3-methyl-2-oxobutanoic acid, and lauroyl-carnitine. This untargeted metabolomic analysis approach in the corneal epithelium-on-a-chip has the potential to be further employed in combination with additional drugs in future.

Current Status of Research Progress
Current Status of Research Progress

1: Research has progressed more than it was originally planned.

Reason

The advancement of this research can be credited to the effective implementation of an optimized untargeted metabolomic method for detecting extracellular metabolites in a corneal epithelium-on-a-chip model. Additionally, the capability to validate the system with a drug model has facilitated the discovery of new metabolite markers.

Strategy for Future Research Activity

Based on current progress, we will initially investigate the function of the discovered metabolite markers to determine if they serve as toxic markers when tested with a larger set of drugs. Secondly, we will explore the sensitivity of these markers by examining their correlation with the early onset of relevant gene expression. Additionally, we will concentrate on employing human cells derived from human induced pluripotent stem cells (iPSCs).

Report

(2 results)
  • 2023 Research-status Report
  • 2022 Research-status Report
  • Research Products

    (11 results)

All 2024 2023 2022 Other

All Journal Article (3 results) (of which Int'l Joint Research: 2 results,  Peer Reviewed: 2 results,  Open Access: 1 results) Presentation (6 results) (of which Int'l Joint Research: 1 results,  Invited: 3 results) Remarks (2 results)

  • [Journal Article] Modeling dry eye with an air liquid interface in corneal epithelium-on-a-chip2024

    • Author(s)
      Kado Abdalkader Rodi、Chaleckis Romanas、Fujita Takuya、Kamei Ken-ichiro
    • Journal Title

      Scientific Reports

      Volume: 14 Issue: 1 Pages: 4185-4185

    • DOI

      10.1038/s41598-024-54736-z

    • Related Report
      2023 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Corneal epithelium models for safety assessment in drug development: Present and future directions2023

    • Author(s)
      Rodi Kado Abdalkader, Takuya Fujita
    • Journal Title

      Experimental Eye Research

      Volume: 237 Pages: 109697-109697

    • DOI

      10.1016/j.exer.2023.109697

    • Related Report
      2023 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Early Differentiation Signatures in Human Induced Pluripotent Stem Cells Determined by Non-Targeted Metabolomics Analysis2023

    • Author(s)
      Abdalkader Rodi、Chaleckis Romanas、Fujita Takuya
    • Journal Title

      bioRxiv

      Volume: -

    • DOI

      10.1101/2023.03.02.530741

    • Related Report
      2022 Research-status Report
  • [Presentation] Microphysiological systems: Advancements and applications in pharmaceutical research2024

    • Author(s)
      Rodi Kado Abdalkader
    • Organizer
      APSTJ (The Academy of Pharmaceutical Science and Technology, JAPAN) education seminar
    • Related Report
      2023 Research-status Report
    • Invited
  • [Presentation] Microphysiological systems and human pluripotent stem cells: An innovative tool for drug development and disease modeling2024

    • Author(s)
      Rodi Kado Abdalkader
    • Organizer
      The 31st next generation biomedical research workshop
    • Related Report
      2023 Research-status Report
    • Invited
  • [Presentation] The development of a micro physiological system of the human corneal epithelium under dry eye-like conditions2023

    • Author(s)
      Rodi Abdalkader, Ken-Ichiro Kamei, Takuya Fujita
    • Organizer
      The Japanese Society for the Study of Xenobiotics (JSSX)
    • Related Report
      2023 Research-status Report
  • [Presentation] RNA sequencing analysis reveals diclofenac-induced changes in gene expression in a dry eye biomimetic model2023

    • Author(s)
      Rodi Abdalkader, Ken-Ichiro Kamei, Takuya Fujita
    • Organizer
      Japanese Society of Toxicology (JSOT)
    • Related Report
      2023 Research-status Report
  • [Presentation] The survival and characteristics of cryopreserved human iPSC-derived corneal epithelial cells generated by SSM-CI method2022

    • Author(s)
      Rodi ABDALKADER
    • Organizer
      World Ophthalmology Congress of the International Council of Ophthalmology (WOC)
    • Related Report
      2022 Research-status Report
    • Int'l Joint Research
  • [Presentation] ヒト角膜・オン・チップの開発2022

    • Author(s)
      Rodi ABDALKADER
    • Organizer
      第9回大学発シーズ マッチングセミナー」~AgeTech (長寿社会×テクノロジー)特集
    • Related Report
      2022 Research-status Report
    • Invited
  • [Remarks] Website

    • URL

      https://rodialkader.wixsite.com/rodi-abdalkader

    • Related Report
      2023 Research-status Report
  • [Remarks] Personal Website

    • URL

      https://rodialkader.wixsite.com/rodi-abdalkader

    • Related Report
      2022 Research-status Report

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Published: 2022-04-19   Modified: 2024-12-25  

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