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On-site cancer diagnosis by high-sensitivity detection of genomic abnormalities in residual tumor samples

Research Project

Project/Area Number 22K16010
Research Category

Grant-in-Aid for Early-Career Scientists

Allocation TypeMulti-year Fund
Review Section Basic Section 53010:Gastroenterology-related
Research InstitutionAsahikawa Medical College

Principal Investigator

Hayashi Akihiro  旭川医科大学, 医学部, 客員助教 (30459573)

Project Period (FY) 2022-04-01 – 2024-03-31
Project Status Completed (Fiscal Year 2023)
Budget Amount *help
¥4,160,000 (Direct Cost: ¥3,200,000、Indirect Cost: ¥960,000)
Fiscal Year 2023: ¥2,210,000 (Direct Cost: ¥1,700,000、Indirect Cost: ¥510,000)
Fiscal Year 2022: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Keywords膵癌 / 低侵襲診断 / 遺伝子変異 / デジタルPCR / 胆道癌 / ゲノム診断 / 膵胆道癌
Outline of Research at the Start

膵胆道系腫瘍の確定診断における細胞・組織診では、検体不適正(insufficient material)と判定される場合が少なくない。その原因は、採取可能な細胞・組織量が少ないことに起因するが、微量検体における診断上の問題を克服するため、ごく少数の癌細胞のもつ遺伝子異常を高感度検出する「デジタル細胞・組織診」を提案する。

Outline of Final Research Achievements

In the definitive diagnosis of pancreatic tumors, histopathological evaluations often deem samples inadequate, typically due to the limited amount of tissue that can be collected. To overcome this challenge, this study employed digital PCR, which excels in the absolute quantification of minute quantities of nucleic acids, aiming to construct a system for the rapid and reliable detection of driver gene mutations in small cell and tissue samples. By multiplexing the system for absolute quantification of genetic abnormalities, including KRAS mutations, we confirmed that it is possible to simultaneously detect KRAS and GNAS mutations and identify the mutation types in less than 1ng of nucleic acids.

Academic Significance and Societal Importance of the Research Achievements

複数の遺伝子異常を同時検出できれば形態学に基づく画像・病理診断を補填し、がん診療に大きく貢献できる。試料採取現場で実施可能なオンサイト検査法とするには、turn around timeを含む課題があるため、今後は反応系の高速化を検討している。

Report

(3 results)
  • 2023 Annual Research Report   Final Research Report ( PDF )
  • 2022 Research-status Report
  • Research Products

    (6 results)

All 2023 2022

All Journal Article (1 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 1 results) Presentation (5 results) (of which Int'l Joint Research: 4 results)

  • [Journal Article] Multiplex Digital PCR Assay to Detect Multiple KRAS and GNAS Mutations Associated with Pancreatic Carcinogenesis from Minimal Specimen Amounts2023

    • Author(s)
      Maeda Chiho、Ono Yusuke、Hayashi Akihiro、Takahashi Kenji、Taniue Kenzui、Kakisaka Rika、Mori Miyuki、Ishii Takahiro、Sato Hiroki、Okada Tetsuhiro、Kawabata Hidemasa、Goto Takuma、Tamamura Nobue、Omori Yuko、Takahashi Kuniyuki、Katanuma Akio、Karasaki Hidenori、Liss Andrew Scott、Mizukami Yusuke
    • Journal Title

      The Journal of Molecular Diagnostics

      Volume: 23 Issue: 6 Pages: 1525-1578

    • DOI

      10.1016/j.jmoldx.2023.02.007

    • Related Report
      2023 Annual Research Report 2022 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Presentation] 細胞外小胞によるmiR-425の細胞間伝達は上皮間葉形質転換を促進し膵癌進展を制御する2022

    • Author(s)
      小山一也、高橋賢治、 藤林周吾、林 明宏、河端秀賢、岩本英孝、後藤拓磨、北野陽平、藤谷幹浩、水上裕輔、奥村利勝.
    • Organizer
      第30回日本消化器関連学会週間
    • Related Report
      2022 Research-status Report
  • [Presentation] Tumor-suppressive effect of mutant GNAS through the restriction of tumor aggressiveness in established pancreatic cancer.2022

    • Author(s)
      Hidemasa Kawabata, Yusuke Ono, Nobue Tamamura, Hiroki Sato, Kenji Takahashi, Kenzui Taniue, Tetsuhiro Okada, Syugo Fujibayashi, Akihiro Hayashi, Takuma Goto, Hiroaki Konishi, Mikihiro Fujiya, Hidenori Karasaki, Andrew S. Liss, Yusuke Mizukami, Toshikatsu Okumura.
    • Organizer
      DDW2022/AGA2022
    • Related Report
      2022 Research-status Report
    • Int'l Joint Research
  • [Presentation] The application of EV RNA panel as liquid biopsy for pancreatic ductal adenocarcinoma.2022

    • Author(s)
      Kenji Takahashi, Hiroki Sato, Shugo Fujibayashi, Akihiro Hayashi, Hidemasa Kawabata, Hidetaka Iwamoto, Takuma Goto, Yohei Kitano, Yusuke Mizukami, Toshikatsu Okumura
    • Organizer
      第26回国際膵臓学会
    • Related Report
      2022 Research-status Report
    • Int'l Joint Research
  • [Presentation] Molecular barcode sequencing using duodenal fluid for profiling genomic alterations in pancreatic neoplasms.2022

    • Author(s)
      Yusuke Ono, Kenji Takahashi, Akihiro Hayashi, Toru Kawamoto, Tetsuhiro Okada, Keisuke Kimura, Nobuyuki Yanagawa, Hirotoshi Iwano, Kuniyuki Takahashi, Hidenori Karasaki, Yusuke Mizukami.
    • Organizer
      第26回国際膵臓学会
    • Related Report
      2022 Research-status Report
    • Int'l Joint Research
  • [Presentation] Mutant GNAS limits tumor aggressiveness in established pancreatic cancer via antagonizing the KRAS-pathway.2022

    • Author(s)
      Hidemasa Kawabata, Yusuke Ono, Hiroki Sato, Kenji Takahashi, Tetsuhiro Okada, Syugo Fujibayashi, Akihiro Hayashi, Takuma Goto, Mikihiro Fujiya, Yusuke Mizukami, Toshiktsu Okumura.
    • Organizer
      第26回国際膵臓学会
    • Related Report
      2022 Research-status Report
    • Int'l Joint Research

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Published: 2022-04-19   Modified: 2025-01-30  

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