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Habitat preference and Sea-level change as drivers of genetic diversity and evolution in reef crabs

Research Project

Project/Area Number 22KF0319
Project/Area Number (Other) 22F22078 (2022)
Research Category

Grant-in-Aid for JSPS Fellows

Allocation TypeMulti-year Fund (2023)
Single-year Grants (2022)
Section外国
Review Section Basic Section 45030:Biodiversity and systematics-related
Research InstitutionUniversity of the Ryukyus

Principal Investigator

成瀬 貫 (2023)  琉球大学, 熱帯生物圏研究センター, 准教授 (30398309)

Co-Investigator(Kenkyū-buntansha) EVANS NATHANIEL  琉球大学, 熱帯生物圏研究センター, 外国人特別研究員
Host Researcher 成瀬 貫 (2022)  琉球大学, 熱帯生物圏研究センター, 准教授 (30398309)
Foreign Research Fellow EVANS NATHANIEL  琉球大学, 熱帯生物圏研究センター, 外国人特別研究員
Project Period (FY) 2023-03-08 – 2025-03-31
Project Status Granted (Fiscal Year 2023)
Budget Amount *help
¥2,300,000 (Direct Cost: ¥2,300,000)
Fiscal Year 2024: ¥100,000 (Direct Cost: ¥100,000)
Fiscal Year 2023: ¥1,100,000 (Direct Cost: ¥1,100,000)
Fiscal Year 2022: ¥1,100,000 (Direct Cost: ¥1,100,000)
KeywordsPopulation Genomics / Ecological Speciation / Habitat preference / Coral Reefs / Crustaceans
Outline of Research at the Start

Habitat preference is hypothesized to affect the population genetics and evolution of coral reef fauna. To test this, we will conduct significant fieldwork and genomic analyses of 10 reef-associated crab species. Our findings will be published in two impactful publications.

Outline of Annual Research Achievements

This year we completed all of our field collections, generated all our genetic data, and begun our analyses and writing. Genetic work included: (1) the generation of 96 sequences of CO1, 16s, and H3 loci; (2) securing >300 unpublished, CO1 sequences from American collaborators for 30 target species sampled from across the Indo-Pacific; and (3) the generation of 590 million bps of GRAS-Di genomic sequence data for 188 specimens (11 species for population genomics, 66 species for phylogenomic comparative analyses). Combined, these efforts have significantly advanced our aim to investigate the correlation between habitat preference, population genetics, and patterns of diversification across multiple evolutionary radiations of common reef-associated taxa.

Current Status of Research Progress
Current Status of Research Progress

2: Research has progressed on the whole more than it was originally planned.

Reason

We successfully generated significant genetic data sufficient for investigating our major research questions. Securing this data took a little longer than we hoped, but we have made excellent progress in our analyses and we expect to publish several significant manuscripts from this work.

Strategy for Future Research Activity

In FY 2024 we will continue our analyses and writing in order to submit two manuscripts to internationally recognized, peer reviewed journals in the area of ecology and evolutionary biology. In May of 2024 we will present some of our findings at an international professional meeting of The Crustacean Society held at Academia Sinica, Taiwan.

Report

(2 results)
  • 2023 Research-status Report
  • 2022 Annual Research Report
  • Research Products

    (4 results)

All 2023 Other

All Int'l Joint Research (1 results) Journal Article (2 results) (of which Peer Reviewed: 1 results) Presentation (1 results)

  • [Int'l Joint Research] University of Florida(米国)

    • Related Report
      2023 Research-status Report
  • [Journal Article] First record of the Harlequin crab Lissocarcinus orbicularis, an obligate symbiont of sea cucumbers, from the Red Sea2023

    • Author(s)
      Lasley Robert、Evans Nathaniel、Paulay Gustav、Uyeno Daisuke、Carvalho Susana
    • Journal Title

      Specimen

      Volume: 15 Pages: 2-2

    • DOI

      10.56222/28166531.2023.15

    • Related Report
      2023 Research-status Report
  • [Journal Article] Allopatric mosaics in the Indo-West Pacific crab subfamily Chlorodiellinae reveal correlated patterns of sympatry, genetic divergence, and genitalic disparity2023

    • Author(s)
      Lasley Robert M.、Evans Nathaniel、Paulay Gustav、Michonneau Francois、Windsor Amanda、Irwansyah、Ng Peter K.L.
    • Journal Title

      Molecular Phylogenetics and Evolution

      Volume: 181 Pages: 107710-107710

    • DOI

      10.1016/j.ympev.2023.107710

    • Related Report
      2023 Research-status Report
    • Peer Reviewed
  • [Presentation] Habitat preference, speciation and phylogenetic niche conservatism in Thalamita swimming crabs (Portunidae, Thalamitinae).2023

    • Author(s)
      Evans, N., Sato, T., Naruse, T.
    • Organizer
      日本甲殻類学会
    • Related Report
      2023 Research-status Report

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Published: 2022-07-28   Modified: 2024-12-25  

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