• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

Design and construction of new systems for regulating human cell fate

Research Project

Project/Area Number 23221011
Research Category

Grant-in-Aid for Scientific Research (S)

Allocation TypeSingle-year Grants
Research Field Chemical biology
Research InstitutionKyoto University

Principal Investigator

INOUE Tan  京都大学, 生命科学研究科, 教授 (40114855)

Co-Investigator(Kenkyū-buntansha) SAITO Hirohide  京都大学, iPS細胞研究所, 教授 (20423014)
Co-Investigator(Renkei-kenkyūsha) 樫田 俊一  京都大学, 大学院生命科学研究科
遠藤 慧  京都大学, iPS細胞研究所, 博士研究員 (40626074)
藤田 祥彦  京都大学, 大学院生命科学研究科, 助教 (80192730)
原 知明  京都大学, 大学院生命科学研究科
大野 博久  京都大学, 大学院生命科学研究科, 博士研究員
佐川 文彦  京都大学, 大学院生命科学研究科, 技術員
大内 将司  京都大学, 大学院生命科学研究科, 博士研究員 (20422412)
Project Period (FY) 2011-04-01 – 2015-03-31
Project Status Completed (Fiscal Year 2014)
Budget Amount *help
¥110,890,000 (Direct Cost: ¥85,300,000、Indirect Cost: ¥25,590,000)
Fiscal Year 2014: ¥31,590,000 (Direct Cost: ¥24,300,000、Indirect Cost: ¥7,290,000)
Fiscal Year 2013: ¥31,590,000 (Direct Cost: ¥24,300,000、Indirect Cost: ¥7,290,000)
Fiscal Year 2012: ¥31,590,000 (Direct Cost: ¥24,300,000、Indirect Cost: ¥7,290,000)
Fiscal Year 2011: ¥16,120,000 (Direct Cost: ¥12,400,000、Indirect Cost: ¥3,720,000)
KeywordsRNP / シンセティックバイオロジー / バイオナノテクノロジー
Outline of Final Research Achievements

We developed new molecular switches for synthetic biology and bio-nanotechnology that respond to a specific protein in human cell. We also successfully incorporated feedback control of the switches and related techniques for the switches. A new general method for converting existing OFF molecular switches to the corresponding ON switches was developed.We designed and constructed a triangular shaped RNP with cell-surface receptor binding protein to control the signal transduction from the receptor. The RNP device is capable of regulating the signal transduction in an OFF and ON manner in human cell that regulate the apoptotic cell death. In addition, we also developed new methods for further advance our RNP technology.

Assessment Rating
Verification Result (Rating)

A

Assessment Rating
Result (Rating)

A: Progress in the research is steadily towards the initial goal. Expected research results are expected.

Report

(8 results)
  • 2015 Research Progress Assessment (Verification Result) ( PDF )
  • 2014 Annual Research Report   Final Research Report ( PDF )
  • 2013 Annual Research Report   Abstract(Research Progress Assessment) ( PDF )   Research Progress Assessment (Result) ( PDF )
  • 2012 Annual Research Report
  • 2011 Annual Research Report
  • Research Products

    (22 results)

All 2015 2014 2013 2012 Other

All Journal Article (14 results) (of which Peer Reviewed: 13 results,  Open Access: 6 results,  Acknowledgement Compliant: 5 results) Presentation (8 results)

  • [Journal Article] A purification method for a molecular complex in which a scaffold molecule is fully loaded with heterogeneous molecules2015

    • Author(s)
      Shoji Ohuchi, Fumihiko Sagawa, Tan Inoue
    • Journal Title

      PLoS ONE

      Volume: 10 Issue: 3 Pages: e0120576-e0120576

    • DOI

      10.1371/journal.pone.0120576

    • NAID

      120005615650

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Designed regular tetragon-shaped RNA-protein complexes with RPL1 for bionanotechnology and synthetic biology2015

    • Author(s)
      Hirohisa Ohno, Tan Inoue
    • Journal Title

      ACS nano

      Volume: x

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Stereo-specific azimuth adjustment of a protein at the tip of an RNA using the circular permutation technique2015

    • Author(s)
      Shoji Ohuchi, Fumihiko Sagawa, Tan Inoue
    • Journal Title

      ACS nano letter

      Volume: x

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] A trifunctional, triangular RNA-protein complex2015

    • Author(s)
      Shoji Ohuchi, Fumihiko Sagawa, Tan Inoue
    • Journal Title

      FEBS letters

      Volume: x

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Cell-surface receptor control that depends on the size of a synthetic equilateral-triangular RNA-protein complex2014

    • Author(s)
      1.Yoshihiko Fujita, Tan Inoue
    • Journal Title

      Sci. Rep.

      Volume: 4 Issue: 1 Pages: 1-7

    • DOI

      10.1038/srep06422

    • NAID

      120005575182

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Synthetic RNA–Protein Nanostructures and Their Potential Applications2014

    • Author(s)
      Hirohisa Ohno
    • Journal Title

      RNA Nanotechnology and Therapeutics

      Volume: 未定

    • Related Report
      2013 Annual Research Report
  • [Journal Article] A versatile cis-acting inverter module for synthetic translational switches2013

    • Author(s)
      Kei Endo et al.
    • Journal Title

      Nature Communications

      Volume: 4 Issue: 1 Pages: 1-9

    • DOI

      10.1038/ncomms3393

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Directed evolution of a synthetic RNA-protein module to create a new translational switch.2013

    • Author(s)
      Tomoaki Hara
    • Journal Title

      Chem. Commun.

      Volume: 37 Pages: 3833-3835

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Quantitative and simultaneous translational control of distinct mammalian mRNAs2013

    • Author(s)
      Kei Endo
    • Journal Title

      Nucleic Acids Res.

      Volume: Epub Pages: 1-12

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Directed evolution of a synthetic RNA-protein module to create a new translational switch2013

    • Author(s)
      Tomoaki Hara, Hirohide Saito and Tan Inoue
    • Journal Title

      Chem. Commun.

      Volume: Epub

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Three-dimensionally designed protein-responsive RNA devices for cell signaling regulation,2012

    • Author(s)
      Shunnichi Kashida
    • Journal Title

      Nucleic Acids Res.

      Volume: 40 Pages: 9369-9378

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Three-dimensionally designed protein-responsive RNA devices for cell signaling regulation2012

    • Author(s)
      Shunnichi Kashida, Tan Inoue and Hirohide Saito
    • Journal Title

      Nucleic Acids Res.

      Volume: 40 Pages: 9369-9378

    • NAID

      120004920410

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Self-replication reactions dependent on tertiary interaction motifs in an RNA ligase ribozyme.2012

    • Author(s)
      Ohmori R, Saito H, Ikawa Y, Fujita Y, Inoue T.
    • Journal Title

      J. Mol. Evol.

      Volume: 73 Pages: 221-229

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Feedback Control of Protein Expression in Mammalian Cells by Tunable Synthetic Translational Inhibition2012

    • Author(s)
      James A. Stapleton, Kei Endo, Yoshihiko Fujita, Karin Hayashi, Masahiro Takinoue, Hirohide Saito, and Tan Inoue
    • Journal Title

      ACS Synthetic Biology

      Volume: 1 Pages: 83-88

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Presentation] Purification of a triangular RNA-protein complex fully loaded with an RNA-binding protein by sequential affinity elimination.2014

    • Author(s)
      Shoji Ohuchi
    • Organizer
      The 41st Symposimum on Nucleic Acids Chemistry
    • Place of Presentation
      Kitakyushu International Conference Center, Kitakyushu, Japan
    • Year and Date
      2014-11-05 – 2014-11-07
    • Related Report
      2014 Annual Research Report
  • [Presentation] RNP ナノ構造による細胞表面レセプターの信号制御2014

    • Author(s)
      藤田 祥彦
    • Organizer
      日本分子生物学会
    • Place of Presentation
      京都市 国立京都国際会館
    • Year and Date
      2014-10-15 – 2014-10-18
    • Related Report
      2014 Annual Research Report
  • [Presentation] Size Dependent Regulation of Apoptosis with a Series of Equilateral-Triangular Shaped RNA-protein Complexes2014

    • Author(s)
      Yoshihiko Fujita
    • Organizer
      DNA20
    • Place of Presentation
      Kyoto University, Kyoto
    • Year and Date
      2014-09-22 – 2014-09-25
    • Related Report
      2014 Annual Research Report
  • [Presentation] Square-shaped nanostructures made with RNA-protein interacting module2014

    • Author(s)
      Hirohisa Ohno
    • Organizer
      DNA20
    • Place of Presentation
      Kyoto University, Kyoto
    • Year and Date
      2014-09-22 – 2014-09-25
    • Related Report
      2014 Annual Research Report
  • [Presentation] In vitro selection of promoter sequences employing a hairpin-shaped DNA and a streptavidin-binding aptamer

    • Author(s)
      Shoji Ouchi
    • Organizer
      Federation of European Biochemical Societies Congress 2013
    • Place of Presentation
      St Petersburg (ロシア)
    • Related Report
      2013 Annual Research Report
  • [Presentation] Fine-tuning of the orientation and positioning of L7Ae RNA-binding protein on the triangular RNA

    • Author(s)
      Shoji Ouchi
    • Organizer
      40th International Symposium on Nucleic Acids Chemistry
    • Place of Presentation
      横浜
    • Related Report
      2013 Annual Research Report
  • [Presentation] 三次元分子デザイン:蛋白質に応答する人工RNAデバイスの構築

    • Author(s)
      齊藤博英
    • Organizer
      分子ロボティックス研究会
    • Place of Presentation
      京都大学 吉田キャンパス
    • Related Report
      2012 Annual Research Report
  • [Presentation] 三次元分子デザイン:蛋白質に応答する人工RNAデバイスの構築

    • Author(s)
      斉藤博英
    • Organizer
      分子ロボティックス研究会6月定例会
    • Place of Presentation
      京都大学 吉田キャンパス
    • Related Report
      2011 Annual Research Report

URL: 

Published: 2011-06-18   Modified: 2019-07-29  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi